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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050882 ID=TCONS_00050882|Name=TCONS_00050882|organism=Clytia hemisphaerica|type=transcript|length=1895bp
GATATATAAATAGAGGTTGGAAAGGGACTGTGAGAAGCTTCATTTAATAA
GAGAAGTAAGAGCAAGCAGCAACCAGTTATCACATTTATCAAAGAACTTT
ATTACCGCTTCATAAAACATTATCACCATGGCTCAAGTCTTTTTGGTAAT
GGCTTCAAAATGGTGGGAATCTGGTGATTATGCCAATGCATTAATCTGGT
ATGAAACATTACTTCAATATTATCAAGCGGAGAAAGACGATGACGTGACC
AATCAGATTTGGGAAACGAAATACATGATAGGCAAGTGTCTCTACCAGTG
TGGACGACATGACGAAGCATTGcaaatattccaaaaaacaCTTATATCAT
TGAGACAGACTTACTCAGCTGATCACGATGAGGTTCTAGAGGTTTTGAAC
GAAATTGCTTTGTGTTATTGTGGTAAAGGCGAACATCCAAAAGCTCTGGA
GATTTACCAAGATATTGAGAAAGTTGATCAACGTAAAAGAAAGTATGACA
AAGACACTTTAGTCACAAGAAGCTCCATTGCAATGTGTTATTCTAATATG
GATAGATTGGTTGAATCAAAACAGATTTATGAGGAGGTTTTAGCTGAACA
AATCAAAATGTTAGGTCCTGATCATTCACATGTGATGTATACAAAAACTA
ATCTGGCCACGTGTCTTCAACGAATGGGAAAGTCTCAGCAAGCTTTTGAA
ATCTATCAAAATTCAACATTGAAAACGCCTTTTGGCAATGAGCACTTAGC
GTCTATTCAAAACAAATCGAATCAAATCGGATGTTTAATCGATCAAGGAC
GTCTTGAGGATGCATTGAATATGAGCTTCGATGTCCAAAGGTCAATCGAG
AAAAAATATAGTCGAAAGCATCCAACGTGGACAAATGCTCGTTTAGAGCT
GGCTAAAATCTTAGTTCAatctaaaaaatttgatgaagcaATTTTAGTTA
CTTTAGAAGTCAAATCCATCTATATGGAAACTAAAGGAGAAGATCACCAA
GACATGTTACAAATTGTGAATCTATTAGCAGCATGTTATTCAGGGAAAGA
TGATTACCAGGAAGCTTTGAGGATCCAGCAAGAAAGTCTAAAGAAGTTTC
CCAACGCCGATATTCGTTCCTCAGCAACGTTACGAAATAATATTGCAAGG
ACTTTGTTTGATTTGGGAAGACCACAAGACGGGTTAACCATTATTGATGA
TGTAGATCGGCAAATGACAAAACTTCTTGGTGAGAAGCACCCTGATTCAA
TATTGGTTAAGAAGAATAAAGCTAAGTTATTGTTGGAAAGTGACTTACAT
CAGGATGCAGCTCATTGTTTTCGTGAAGTAGAACTTCTTTATAAAGTAAC
TTGCAATATGAAATCATTATTAGAGGTTCGTAAAGAGCTTATGATTTGCT
TTCTGGAGATGAATGATTTAAATCAGTGTTTAGAAGTATATTCTCATCTG
CGTGATCAAATGGATGATGATTATGAATTATGTTCAATAAAGAATAAATT
AGCATTAAAGCTTGCGGATACTGACAATTATAAACGGCAAGCTgtgaaaa
tctttaaagaagttgAACGCATTATGGAAGAAACTGTGAAATTACCAGCA
ACAAATCCTGCTTTGTTGAACACTAAATTGAACATTGCGACTTGCTTGGA
AGAACTTGGTGACCAACAAGAAGCTGATTTGTATTTTAAACATATTCAAA
ATATTAAGCCGGGTTATTCCGGATAATTAAATTTTGTACgatttattttg
ttaaatttataTTACATGTTCATGGTTAAAGAATAGAAACAATTCATCAC
TTAAACTTATTGTTTTCTTCTATGTTGATAAACTAAGTTTCTCTTTGCCC
TTGCatagtctgaatcacagacctctacaaaactgcAGCATCGCT Run BLAST on NCBI protein sequence of TCONS_00050882-protein >TCONS_00050882-protein ID=TCONS_00050882-protein|Name=TCONS_00050882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=532bp
MAQVFLVMASKWWESGDYANALIWYETLLQYYQAEKDDDVTNQIWETKYM
IGKCLYQCGRHDEALQIFQKTLISLRQTYSADHDEVLEVLNEIALCYCGK
GEHPKALEIYQDIEKVDQRKRKYDKDTLVTRSSIAMCYSNMDRLVESKQI
YEEVLAEQIKMLGPDHSHVMYTKTNLATCLQRMGKSQQAFEIYQNSTLKT
PFGNEHLASIQNKSNQIGCLIDQGRLEDALNMSFDVQRSIEKKYSRKHPT
WTNARLELAKILVQSKKFDEAILVTLEVKSIYMETKGEDHQDMLQIVNLL
AACYSGKDDYQEALRIQQESLKKFPNADIRSSATLRNNIARTLFDLGRPQ
DGLTIIDDVDRQMTKLLGEKHPDSILVKKNKAKLLLESDLHQDAAHCFRE
VELLYKVTCNMKSLLEVRKELMICFLEMNDLNQCLEVYSHLRDQMDDDYE
LCSIKNKLALKLADTDNYKRQAVKIFKEVERIMEETVKLPATNPALLNTK
LNIATCLEELGDQQEADLYFKHIQNIKPGYSG Run BLAST on NCBI transcript from alignment at scaffold_19:587822..590105+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050882 ID=TCONS_00050882|Name=TCONS_00050882|organism=Clytia hemisphaerica|type=transcript|length=2284bp|location=Sequence derived from alignment at scaffold_19:587822..590105+ (Clytia hemisphaerica)
GATATATAAATAGAGGTTGGAAAGGGACTGTGAGAAGCTTCATTTAATAA
GAGAAGTAAGAGCAAGCAGCAACCAGTTATCACATTTATCAAAGGTAAGG
ATGCTGCACAGCCTGTCTCAGTCATCCGGTAGATACCGGATGACTGAGAT
CGTTTTGAGATTTAACATTTTAcaccttttcatttcatcttaCATCTCTG
TTCAGGTGATATATTTACTAGTTCCTAGCTATTTGAATCGATTAAAGAAG
CCCTTATCACCAATGGAAATTCgttgaaataatttcaaatctCTCACTGA
GATTTTTCTTATCATAATGTCTGTGAGGATAGTCTCACTTCTCAtggaaa
tgaaaatttcgggtatttttatttcagaatCCACTGCTGAGGTCTGCGAG
TTAGGATATTTACATAAAATTCGATCTAAACCTAAAACCCtccaaaattt
tcattattaaaACAAGATTTTTGTCTCTTATAGAACTTTATTACCGCTTC
ATAAAACATTATCACCATGGCTCAAGTCTTTTTGGTAATGGCTTCAAAAT
GGTGGGAATCTGGTGATTATGCCAATGCATTAATCTGGTATGAAACATTA
CTTCAATATTATCAAGCGGAGAAAGACGATGACGTGACCAATCAGATTTG
GGAAACGAAATACATGATAGGCAAGTGTCTCTACCAGTGTGGACGACATG
ACGAAGCATTGcaaatattccaaaaaacaCTTATATCATTGAGACAGACT
TACTCAGCTGATCACGATGAGGTTCTAGAGGTTTTGAACGAAATTGCTTT
GTGTTATTGTGGTAAAGGCGAACATCCAAAAGCTCTGGAGATTTACCAAG
ATATTGAGAAAGTTGATCAACGTAAAAGAAAGTATGACAAAGACACTTTA
GTCACAAGAAGCTCCATTGCAATGTGTTATTCTAATATGGATAGATTGGT
TGAATCAAAACAGATTTATGAGGAGGTTTTAGCTGAACAAATCAAAATGT
TAGGTCCTGATCATTCACATGTGATGTATACAAAAACTAATCTGGCCACG
TGTCTTCAACGAATGGGAAAGTCTCAGCAAGCTTTTGAAATCTATCAAAA
TTCAACATTGAAAACGCCTTTTGGCAATGAGCACTTAGCGTCTATTCAAA
ACAAATCGAATCAAATCGGATGTTTAATCGATCAAGGACGTCTTGAGGAT
GCATTGAATATGAGCTTCGATGTCCAAAGGTCAATCGAGAAAAAATATAG
TCGAAAGCATCCAACGTGGACAAATGCTCGTTTAGAGCTGGCTAAAATCT
TAGTTCAatctaaaaaatttgatgaagcaATTTTAGTTACTTTAGAAGTC
AAATCCATCTATATGGAAACTAAAGGAGAAGATCACCAAGACATGTTACA
AATTGTGAATCTATTAGCAGCATGTTATTCAGGGAAAGATGATTACCAGG
AAGCTTTGAGGATCCAGCAAGAAAGTCTAAAGAAGTTTCCCAACGCCGAT
ATTCGTTCCTCAGCAACGTTACGAAATAATATTGCAAGGACTTTGTTTGA
TTTGGGAAGACCACAAGACGGGTTAACCATTATTGATGATGTAGATCGGC
AAATGACAAAACTTCTTGGTGAGAAGCACCCTGATTCAATATTGGTTAAG
AAGAATAAAGCTAAGTTATTGTTGGAAAGTGACTTACATCAGGATGCAGC
TCATTGTTTTCGTGAAGTAGAACTTCTTTATAAAGTAACTTGCAATATGA
AATCATTATTAGAGGTTCGTAAAGAGCTTATGATTTGCTTTCTGGAGATG
AATGATTTAAATCAGTGTTTAGAAGTATATTCTCATCTGCGTGATCAAAT
GGATGATGATTATGAATTATGTTCAATAAAGAATAAATTAGCATTAAAGC
TTGCGGATACTGACAATTATAAACGGCAAGCTgtgaaaatctttaaagaa
gttgAACGCATTATGGAAGAAACTGTGAAATTACCAGCAACAAATCCTGC
TTTGTTGAACACTAAATTGAACATTGCGACTTGCTTGGAAGAACTTGGTG
ACCAACAAGAAGCTGATTTGTATTTTAAACATATTCAAAATATTAAGCCG
GGTTATTCCGGATAATTAAATTTTGTACgatttattttgttaaatttata
TTACATGTTCATGGTTAAAGAATAGAAACAATTCATCACTTAAACTTATT
GTTTTCTTCTATGTTGATAAACTAAGTTTCTCTTTGCCCTTGCatagtct
gaatcacagacctctacaaaactgcAGCATCGCT Coding sequence (CDS) from alignment at scaffold_19:587822..590105+ >TCONS_00050882 ID=TCONS_00050882|Name=TCONS_00050882|organism=Clytia hemisphaerica|type=CDS|length=1599bp|location=Sequence derived from alignment at scaffold_19:587822..590105+ (Clytia hemisphaerica)
ATGGCTCAAGTCTTTTTGGTAATGGCTTCAAAATGGTGGGAATCTGGTGA
TTATGCCAATGCATTAATCTGGTATGAAACATTACTTCAATATTATCAAG
CGGAGAAAGACGATGACGTGACCAATCAGATTTGGGAAACGAAATACATG
ATAGGCAAGTGTCTCTACCAGTGTGGACGACATGACGAAGCATTGcaaat
attccaaaaaacaCTTATATCATTGAGACAGACTTACTCAGCTGATCACG
ATGAGGTTCTAGAGGTTTTGAACGAAATTGCTTTGTGTTATTGTGGTAAA
GGCGAACATCCAAAAGCTCTGGAGATTTACCAAGATATTGAGAAAGTTGA
TCAACGTAAAAGAAAGTATGACAAAGACACTTTAGTCACAAGAAGCTCCA
TTGCAATGTGTTATTCTAATATGGATAGATTGGTTGAATCAAAACAGATT
TATGAGGAGGTTTTAGCTGAACAAATCAAAATGTTAGGTCCTGATCATTC
ACATGTGATGTATACAAAAACTAATCTGGCCACGTGTCTTCAACGAATGG
GAAAGTCTCAGCAAGCTTTTGAAATCTATCAAAATTCAACATTGAAAACG
CCTTTTGGCAATGAGCACTTAGCGTCTATTCAAAACAAATCGAATCAAAT
CGGATGTTTAATCGATCAAGGACGTCTTGAGGATGCATTGAATATGAGCT
TCGATGTCCAAAGGTCAATCGAGAAAAAATATAGTCGAAAGCATCCAACG
TGGACAAATGCTCGTTTAGAGCTGGCTAAAATCTTAGTTCAatctaaaaa
atttgatgaagcaATTTTAGTTACTTTAGAAGTCAAATCCATCTATATGG
AAACTAAAGGAGAAGATCACCAAGACATGTTACAAATTGTGAATCTATTA
GCAGCATGTTATTCAGGGAAAGATGATTACCAGGAAGCTTTGAGGATCCA
GCAAGAAAGTCTAAAGAAGTTTCCCAACGCCGATATTCGTTCCTCAGCAA
CGTTACGAAATAATATTGCAAGGACTTTGTTTGATTTGGGAAGACCACAA
GACGGGTTAACCATTATTGATGATGTAGATCGGCAAATGACAAAACTTCT
TGGTGAGAAGCACCCTGATTCAATATTGGTTAAGAAGAATAAAGCTAAGT
TATTGTTGGAAAGTGACTTACATCAGGATGCAGCTCATTGTTTTCGTGAA
GTAGAACTTCTTTATAAAGTAACTTGCAATATGAAATCATTATTAGAGGT
TCGTAAAGAGCTTATGATTTGCTTTCTGGAGATGAATGATTTAAATCAGT
GTTTAGAAGTATATTCTCATCTGCGTGATCAAATGGATGATGATTATGAA
TTATGTTCAATAAAGAATAAATTAGCATTAAAGCTTGCGGATACTGACAA
TTATAAACGGCAAGCTgtgaaaatctttaaagaagttgAACGCATTATGG
AAGAAACTGTGAAATTACCAGCAACAAATCCTGCTTTGTTGAACACTAAA
TTGAACATTGCGACTTGCTTGGAAGAACTTGGTGACCAACAAGAAGCTGA
TTTGTATTTTAAACATATTCAAAATATTAAGCCGGGTTATTCCGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050882-exon-scaffold_19-1491911889:587822..587915 | TCONS_00050882-exon-scaffold_19-1491911889:587822..587915 | Clytia hemisphaerica | exon |
| TCONS_00050882-exon-scaffold_19-1510915933:587822..587915 | TCONS_00050882-exon-scaffold_19-1510915933:587822..587915 | Clytia hemisphaerica | exon |
| TCONS_00050882-exon-scaffold_19-1575043694:587822..587915 | TCONS_00050882-exon-scaffold_19-1575043694:587822..587915 | Clytia hemisphaerica | exon |
| TCONS_00050882-exon-scaffold_19-1491911889:588305..590105 | TCONS_00050882-exon-scaffold_19-1491911889:588305..590105 | Clytia hemisphaerica | exon |
| TCONS_00050882-exon-scaffold_19-1510915933:588305..590105 | TCONS_00050882-exon-scaffold_19-1510915933:588305..590105 | Clytia hemisphaerica | exon |
| TCONS_00050882-exon-scaffold_19-1575043694:588305..590105 | TCONS_00050882-exon-scaffold_19-1575043694:588305..590105 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:587822..590105 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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