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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050894 ID=TCONS_00050894|Name=TCONS_00050894|organism=Clytia hemisphaerica|type=transcript|length=390bp
ttttctttcaaactttTGTCAAGTTGGTGGTTGGAAGGAGGCGGCCGACc
taatttcgcgaaattaatcATATGCCCACGTATTTACGCCATTTTATTTC
TATACTATTTatccattttgaaaataatttgagcaaattatttttttcga
gcTGAAGAAAGGTTGAAATCACCGCATTATGGATTGGATCGTTGTGTTAG
AAAGCCGTGATAACAACAATACCAATAGTAGCATGCTTGGTTATCATTTC
CATGACGACACCAATGGCAACGCAGTCAAATGCATGGATGAAAAATGTGA
AATCACTAAAAAGAGAATCGAAAAGTATTCAGAGTTAGTTCACAAGgaaG
AAGAAATCATGGAAAAATATgaAAAGACAGTAGAATTGAG Run BLAST on NCBI transcript from alignment at scaffold_19:754837..762267+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050894 ID=TCONS_00050894|Name=TCONS_00050894|organism=Clytia hemisphaerica|type=transcript|length=7431bp|location=Sequence derived from alignment at scaffold_19:754837..762267+ (Clytia hemisphaerica)
ttttctttcaaactttTGTCAAGTTGGTGGTTGGAAGGAGGCGGCCGACc
taatttcgcgaaattaatcATATGCCCACGTATTTACGCCATTTTATTTC
TATACTATTTatccattttgaaaataatttgagcaaattatttttttcga
gcTGAAGAAAGGTTGAAATCACCGCATTATGGATTGGATCGTTGTGTTAG
AAAGGTGAGCGACTAATTCATACTCATACTCATCACTTAAAATTTCTTAT
AGATATGAATtaaacacacccctgtctcgagTACCTGTTTAGAATACTTT
CACACCgggaaaagattttaaaaagtttcacAGTGGTGATTACaggatac
actttttttttttattagaacctagtttataagaacatataggctgaaat
tcgtcgaaaaattaagaacatcttaagaacatgcccagcctcagtttgga
aaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNaaaaaaaaaaacgtgtacacctTCTTATAAGAAGGTCAGAAATTTT
GGAAGACTTGAGATGTTCTTCAGCTTTTTGGGCTTAAAACCTAAAAATCT
TCTCAATGGTcatattttcaacatttcttGATTATTTTGGCGAAATTTCC
AAACAATTTAAATTAGggttagagtctgcaaagcaaagccttgaaatatt
aaacttttttgcctcgaagccttatgttcttataaaaaaagctcaCTCGA
ATTAAAGACGTGATtgtgtttaaccctttaagcatagaggtataaagaaa
acaggagttgaatgtgtcggtaattggtcgttaaagtcttttgatttctt
ttataaaatgtatcaaaagaaattctaagctcgcccgNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNat
atatgagattatgagcatgcatacatcgtaacttttttaatcgtagggcg
agcttggttacaatagcatacttctcctgtctttctttatacctccatgc
tttAAGTGTCAATGTcatatatatcagacatgggctatgtaggcctgtaa
tgcccagtttgagttagaaatcgtaatttttggtataactcgtaggaatt
gaattgggcttcatggccaagcgaaaaaaaatcaaaagtgagttttttca
gcgagattttaatataagctaaaaagtcaaaaaaatgctaaaatttgaca
aaaatccacatttttaagattttgaccagttttgactatttttggtcaac
gagtgacccaagaacctccaaatttggccctgatttACTTcattctgtcc
tccagcgaaataatttgaagttttaccactgggcacatttctatcattca
ggcaggttcGCGCAGCGGACATGACTCTAATCTATCCAAcggactataaa
cgagcttctaactccttctagatctgatctggagatataagcctttaaag
tttgaactagcgattttctttgaaaaacttagaaaaaaatgaccgtggca
cttttAGGGTTAAATATTCttacgcttttttataagaacgtccaaaatat
tttaggctACGGATGTTCTTAAACCTTTTGCGTCGAATTGAGTTTTACTC
ACCCATTTTAAGAGTGTTTTATTCGATTTCCAAAGAAACTGATTTGTTTT
AGAGcctccaaagccttaaaatgttcttaaattaaGGCCTAGTGTTTTCA
GTTATAAACCATGGCGCGGAAGCTTGCGtctgtaaaatttgcaaaaacct
GCTCCATTGAAGAGGGCGGGTAGGGCCAATCCCGGTGGCTATGGGGGTAC
TATATGTATTGTCGTCATTTTTCTAGCAAAGGGCCCATCGGGTGTAATTT
GAATGGACAATGAAACAGCCTTTAGAATTTAGAAATCAACGGTGCCTTTT
TTCGGCGTTCCGATTCAcggagaaaaaaaacatcataaacgaaaaaaaaa
tttagcatattgaaatttatgttttaaaatcaaAGTGCAAATTATATAAA
TTTTCATCAACTTCTATTACCTAGCATGTAGTTGTGAAAAGAAAACATca
cataaaataaaaattagaaaacacAAACAAGAATTTCTGTTGTTAAAAGT
TCAAATGTGAGGGAGGGTTCAAGATGTTTGGAAGTCTTTTAGCAGTGTTT
GGTAAGCAAAGTAACACTTCTCCGTAGGAGATGCAACAATCCTTGACGTA
ACTTGTATTAAGAAGTGAATTTCATCGTTATTAAGTTAAGATGAGaagtt
tttggttgttttctggtttttatgatttttgaattattccAAAGAAGATT
TAGCAGAACAGTGATCCAACAGGAAAGCCAATCGAAACAGGTATTATGTT
ATTCCAGGggctttgctttgtttttgataggCTGGCGAAATAAGAATTAG
CTCCGGCGAATTCTAAATTCTAGGCCAGCGAATTTTTAGTAAGCTCAGTG
TTTCGATTAGCGTGAGTACGTATTTGAGGCGGCGATCCGAAGTTTTAGAA
CggcgaattgtaattttttcctGCCTTGGACCGACGAATTGTTATTTTTT
CCTGTCTTGGACGGGCgaattgttattttttcgtgccttggaccggcgaa
ttgttatttttttaggTACCTTGAACCGGCGAAAATTTGCCGTTTGCTTG
GCCTAAGTATGGACCTANAGTTATTCTGGGATCATAGTAGCGTGACGGAC
ATGCAACCGAAGTTTTAGACCGGTGAATTGTATTATTTTGTGCCTTGGAC
CGAAATTTGCCATTCACCGGATTAAATAGGACCCCTATCTCTCCTTCTCT
GTTACGCCTATGCCCTTAAAGGCGTCAGGGGCGTCTTTTCGCCCAATAGC
CTGACAAAGACCGGTTAAGATTCGGTCAAAAGtaaaccatagatttataa
agcccgaagggctagattgtctagatggagtgctttaagctcttccaagc
aaaaagaaatattgctgctattgttttcgaaaacccgcgaagcttatgat
tggtcaagcgctgaagttctattgtaatgtcacgtgacttaggtagaaTT
TCTTACCTAACCACatcacacttttcagcaaaagcacgatatctagccct
tcgggctctACAAATCTATGAAGTAAACACATTTTAGACAGAAACGGATT
CTCTTATCTTGGGTAAGCTAAGATGTACCACATCGTCAAAGTCTTGTTGA
AATAAGCTTTACTTCAGTGACTAGTTAGTTACTGTAGCTCTCGCAAAATT
GATCTAGAACAAGAATTCTAaaattgttcgaattacagagtaATTCGGAT
TATTCGAATTATAAAGAGTATTTTACGTGGTTTTCCCACTTCACTCTGGA
ACTAAGagttagttcgaattataaaataaatcagaataatagaggtttgA
ATTAGCGAAAGTTTACTTTGTCCTAACAAAATTAAGGTATTTTAGTCTTT
ATATTCATTATATTTAGTCTATagattttattactttgactGCTTGACTA
attgcacccctgtctcagtgccccggtagaactttttccctcagtgggga
tgaaaatttctatcaaaatgccaatgaggatagaaaatctattgtttcca
gctcgaaaactCCAGTGGGATGGTTCGCAGTGGGGTttaaattgtaggat
attttttccaccggggacgattttttggcctttttttccaccggggtggg
ggtccaccgggtctgtgacacaggggtgtctaatTGCTTAAAAATTACGC
AGAAAGGGTTACAAAAAccgttaaaaagcaaaaaaggcCCTGGGTTtcga
aaattaccaaaatcaaaaatcgactCCCTCAAAGGGTAATGAATCTTTGC
AACCTGgactaaaatcaaattttggcTAAAATGTAACTATGGGTCTATTT
TCGAGCTTTtactcggacatacccgtcatctcgcaaTGCTAGTTACCCCC
CCCCGGTTTTCGGCAAATGAATAGTGCATTATTCGATAGTGCATAAAAGA
GGTTAAACTAGAtgtaaaaacaaattcaaaattcgaATAAGAGTGTGtga
cctttttttattttaattaaaaaagcaTAAGCATTTGGAGGCTTTCGAcc
tatgacttaagtttgacgTAATACCCCGACTATAAAAGGTCGTCACGCAT
TTTTTGTTTAATGATGACCTCTAATTAAACTGTTTTGGCACTAACTTCAT
TAATAAGAGGGCGAAAAAGATTGGATGTGCTATACGCGATAAGATTATGA
TATGATATCGTTTAACTTGTATGTTAAAAACAGAGAGAGAAGATAATATA
TAATGAAAACAAATTTAGATATGGGATGATTGTATTAGTAAGGATGACAC
AATTtcgcaaagaaagattttctaaaCAAACCATAAAATTGTGCAGTCAG
ACTTATAATACAGTATACTAAAGAGCGGTTTGGATGATAAATTTCCGGTA
AATTTCTATTGAGGCtgatctaaaaatattcttattttgtttAGCTTTTA
GATTGAACCTCggcatgttcttaacttgttctcaatgTCGGGacaatttg
tttgtttttgttggttgTTGTATATCGAAAGTTTAAAATCTTGAGATTGT
TCATAAATTGTTCTTGtatttatagcaattttttagtCTGCtaactttca
ttaaaaaaataagaacttttGCGACCACAATCTAAGACTCTTCTTTCGAT
GGCTCTCGAAGATAGGAGTAGAGCTTCTCTCTTTCTCCCGGAATTGCTTT
CCCAGctggcatacaacgttgttttaacgttactccaacgttatatggac
gttgtgaacgttagataaacgttgacacaacgttgtgtgccattgCTTTA
CTTACGCCTTGATCCTGAACCTTCCCTTTAACTGCTAAGCACAaaacaga
gaggcatcaagtaccattttggggaTCTTGATGTAGCCCAGCTTTAGAGG
TTACACCCACAACCTTGGGCGATCTAGTCTAATGACCTACCTTTTGGCTA
CTCCCAATTCTAAGGCTAAGCATTGATGAGAATTTTAGCCTGTGATCTTT
GTCTATTTTCTTCTTTAGCCGTGATAACAACAATACCAATAGTAGCATGC
TTGGTTATCATTTCCATGACGACACCAATGGCAACGCAGTCAAATGCATG
GATGAAAAATGTGAAATCACTAAAAAGAGAATCGAAAAGTATTCAGAGTT
AGTTCACAAGGTAAGTGCAAGtcttaaatcttgaaaatacaccttttcga
ccttaGCCACCAATTGCTGCACgggcattttttaccaccctagACTCAAT
CCAATCctctttttacacttttttctattgtctttaggcgcgaaaaaaga
ctgggacggttgtagggtggtaaaaaatgcccGCACAGCAATTAGCGGCt
atggtcaaaaaggtgttttaAGCAGTgaattttgctttttattttctctt
attttcttATACACCCTAGGTCTTAGAAAGGGGCGTTAGGATAATTTTAA
TCTGTGACactaaaattatatttaaattttccgcttttcttttttgaagg
aaGAAGAAATCATGGAAAAATATGTAAGTTCACAACATTGTCGACTTGTT
TTCCATACTCAAAATTTAATGGGATAACGTCACCCTAACATTCTCTACCC
TTTTTATATATATGAATGCgtaaatgggctttttcacttgcgtgaatgct
tgaaaatatttaaaaaattgcatgatTGTGTGAATTGCAGGTCTGCATGC
GCCGCTTTTATTgggttttccagaaaaaaaccgtacaccACCTGTTAAGG
AGCTCCAACATTTTGTGAATCACCCcattggaattccaggcaattttagg
atcatacccctctggaattccgaatttttacagattttcattcattaccc
ccatggaattccactaacttttgacggatttttgtcAACTGCTATGGagt
tccactgcatttcaaatcatacccccttggaatggaaatggactcctcaa
caggaggtgcacggttttttttctagaaaagcccaTTGCTGAGGAGCCCT
CGACGTCTCTAATATTTTATCGCTTATATCAGACGATTTTCTAGAAGGAT
GCTTAAAAACCATTACATATTTACACGCAGAGaaacaaaattaatttgat
aTCTGTTTTGAAGTATTTGGAGAAACGGAGATAAGAGAGATATCGAAAAT
AGGCTCCCGGGCCTAATGTTACTTAGATAGATAAAGTGTACTTAAGTGAC
AATAAAAAACCTGTCGAGATTAAGCtaccttttcaaaaaaaaggatAAGA
CCAGGGCTAAAACTAATcaaataaaatccaaataaaaacGAGGATGGTGC
TTGTCTTATGGACACTGGGGTCTAGGGTGAGTTGCAAAGGGTTCAGAAAG
CCTAGTAAATAGAACATCTTGTTTAGGATTTCGAAGTATTAAAACTTTTC
TGTAAACATGTTTGAAATGCTGAGATCAATGACCCGCTTATGCAAAGCTT
GATTTTAAGAGACGTTTTAGTATTTAGATCACGAATAAATCaatcatttt
tctatttttaggaAAAGACAGTAGAATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050894-exon-scaffold_19-1491911889:754837..755040 | TCONS_00050894-exon-scaffold_19-1491911889:754837..755040 | Clytia hemisphaerica | exon |
| TCONS_00050894-exon-scaffold_19-1510915933:754837..755040 | TCONS_00050894-exon-scaffold_19-1510915933:754837..755040 | Clytia hemisphaerica | exon |
| TCONS_00050894-exon-scaffold_19-1575043694:754837..755040 | TCONS_00050894-exon-scaffold_19-1575043694:754837..755040 | Clytia hemisphaerica | exon |
| TCONS_00050894-exon-scaffold_19-1491911889:760755..760896 | TCONS_00050894-exon-scaffold_19-1491911889:760755..760896 | Clytia hemisphaerica | exon |
| TCONS_00050894-exon-scaffold_19-1510915933:760755..760896 | TCONS_00050894-exon-scaffold_19-1510915933:760755..760896 | Clytia hemisphaerica | exon |
| TCONS_00050894-exon-scaffold_19-1575043694:760755..760896 | TCONS_00050894-exon-scaffold_19-1575043694:760755..760896 | Clytia hemisphaerica | exon |
| TCONS_00050894-exon-scaffold_19-1491911889:761236..761259 | TCONS_00050894-exon-scaffold_19-1491911889:761236..761259 | Clytia hemisphaerica | exon |
| TCONS_00050894-exon-scaffold_19-1510915933:761236..761259 | TCONS_00050894-exon-scaffold_19-1510915933:761236..761259 | Clytia hemisphaerica | exon |
| TCONS_00050894-exon-scaffold_19-1575043694:761236..761259 | TCONS_00050894-exon-scaffold_19-1575043694:761236..761259 | Clytia hemisphaerica | exon |
| TCONS_00050894-exon-scaffold_19-1491911889:762248..762267 | TCONS_00050894-exon-scaffold_19-1491911889:762248..762267 | Clytia hemisphaerica | exon |
| TCONS_00050894-exon-scaffold_19-1510915933:762248..762267 | TCONS_00050894-exon-scaffold_19-1510915933:762248..762267 | Clytia hemisphaerica | exon |
| TCONS_00050894-exon-scaffold_19-1575043694:762248..762267 | TCONS_00050894-exon-scaffold_19-1575043694:762248..762267 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:754837..762267 + |
Blast
The following BLAST results are available for this feature:
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