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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050895 ID=TCONS_00050895|Name=TCONS_00050895|organism=Clytia hemisphaerica|type=transcript|length=2324bp
TGTCCGAAATAGATCAAAGATTCACTGACGTTATTACTCATGGATCACCA
AAATCAAGACGATTTTCTGTACCAAGCAAATTGCTGAGTCAGCATGATGG
TAACCATCATCACCATGACAACCATGCAgtaaacaaaataaagaaaaacg
gTGTCCATCAGCTATCAAACgtCAGTGAAGTTTCTTCAACTGAGGATTTA
CGTAGACAATCTTACCTGTTACAGAGCAAACTCCAAGATGTCACACACAG
CTCGTCCATGCCTAGTTCACCTCTTATGTCAAGGAACAGACGTAAATCGC
ACATGTCACCCCACTCGTCTCCCATTGCAACTagaaaaacaaataaagat
GTTAGCTCAgttaaatcaaatttcaatcagcAAATTTCTGGCGATTGGTC
TCCCGACGGTTCTTTTGAATTAGACTCGCCCACCCAATGGAGTATAGGTA
ATGGTATCCAACGCTCGTCGCCCTTAGTTACAAAAAACACTAATGGTGAA
CAAATACCACGGCGCAGTCGCAAAACTAAAATGGGGGATATTTCTCAAAA
CGAGTCTATTGAAGTGAGATCATTACCATCATCGCCATTAGCAATAAACC
AAATAAATATGGCAGATGCTTGGCTATCGAGAGAAACCAATTCAACGAAA
TCTGACCAATCAGAAAGCTCGATTGAACGTGAGAGCCAATCAAATGAAGC
AGCAAATCAAAACCGTTCTAAAACTACGTCAGCCGAAATACTTTGCAATG
CTGTCAAGAGACGCATGCGTAAAATATCAGCATCGGctgaaaatttgaat
gaaatgaAAGAGTTAAAAGACAAACGTATAAAACAATTAAAAGATTCGAA
AACAATGCCAAATTCTACATCATTAGATAATATACACTTCGTATCTTTGG
CACCACACCCTAAATCGATTGCACAGCTACATCAACATTCTTCTCAgagt
aaaacaaaaagatttcatCGATCTTTGGAAAACCTGATTTCGACATCACA
AAATAATGGTACGTCGTCAAATGAATCAAACCTAGAAACAAATGAGATTC
TTGGACATAAAAAAACTTCGCCTAGGCGGACGCCTTCACCAGAGGGCGGT
GCCGTACCAAAAACACTTGCAAATGATGAAAATCTTGTTACCACCAACGA
CCACGTCAATGAAGTTCGTAAAAGACGTCAAGCAGCAcgtcaaaaattaa
aacaacgTCAAAATCTATTGAACGGTCTTAACAAAGATATCAAAATAGCG
AATCGTGTTTTGCGTAATTTACGGACCAGATCGATGCCATTGCTTGACAA
GATGGACATTAATTTTGAAATCCCATACGAATTCATACAAGCTGTATTAA
ATTCAAACAATCATGGTGGAATTGATGATATTCATGGACATATTAATGAT
TTGATTGTCTAAAACATTTACCGTGACTTTTTTGTTGAATCCAAGTTTGA
AAGCTGCAATCAATTCAAAGTTTTGGTGAAGAAGTAATCAGCTATTTTTC
ACCATGTATTTGGTCACCCATAAAAAAAACACGCCGAATATTTTTCTCTG
TAAATCTCATAACTTTTAGATAGTGTGTCCGGAGAAAATGCAAATTTAAA
CCTACATATCTTGTGATCGAGCCATTGAAACCATTGACTTCGAAGCCCAa
cctcctggatgggaaatgaagccacttatttccaatCCAGAACGCCTAAG
TGTGGTTTCTATACAAACGCCGGGTTAAAAGTAAAATCTGTCGctgaatt
aaaaagaaacagccctcaaaaacaaaggatcagcaagatacaatccgtcg
tcatgattgcggtgTGTTCTAGGCGCTTCtcgatgggaaataagtggctt
cactttttcttgcctgaaaaAGGTtcgagattctactctagcccttcagg
cttttaGATCTCAATGATCGAAACCCTATTTATCAATGGAGGTCTAAATA
AAAACAGTAGAtgtgctcgccctacgattgaAAACTTTATGAAGTCATAA
TCTCATCTGGGTGTGTCAAAAAACGCCCCTATTTCTCGATTTTTGACgtt
aaaatttctattgaactGAAATTTGtagttttgaaattgaattttttacc
ttttgtgaaaattatacatttgtgtgttcatttaaaatgactttaTGACA
ATTCCGCTGACTTACGACAATTTTTCACTGCTCACAGATTTTTTCCTAGT
GGTTTTAGGAGTAGGACCCATAagagaggcccccccagcggaccctcaat
tcacgcaatcacgcaattttttttcgaaattcacgcattcacgcaaattt
tcctcaagtttcacgcaataaccc Run BLAST on NCBI protein sequence of TCONS_00050895-protein >TCONS_00050895-protein ID=TCONS_00050895-protein|Name=TCONS_00050895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp
SEIDQRFTDVITHGSPKSRRFSVPSKLLSQHDGNHHHHDNHAVNKIKKNG
VHQLSNVSEVSSTEDLRRQSYLLQSKLQDVTHSSSMPSSPLMSRNRRKSH
MSPHSSPIATRKTNKDVSSVKSNFNQQISGDWSPDGSFELDSPTQWSIGN
GIQRSSPLVTKNTNGEQIPRRSRKTKMGDISQNESIEVRSLPSSPLAINQ
INMADAWLSRETNSTKSDQSESSIERESQSNEAANQNRSKTTSAEILCNA
VKRRMRKISASAENLNEMKELKDKRIKQLKDSKTMPNSTSLDNIHFVSLA
PHPKSIAQLHQHSSQSKTKRFHRSLENLISTSQNNGTSSNESNLETNEIL
GHKKTSPRRTPSPEGGAVPKTLANDENLVTTNDHVNEVRKRRQAARQKLK
QRQNLLNGLNKDIKIANRVLRNLRTRSMPLLDKMDINFEIPYEFIQAVLN
SNNHGGIDDIHGHINDLIV Run BLAST on NCBI transcript from alignment at scaffold_19:763212..767291+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050895 ID=TCONS_00050895|Name=TCONS_00050895|organism=Clytia hemisphaerica|type=transcript|length=4080bp|location=Sequence derived from alignment at scaffold_19:763212..767291+ (Clytia hemisphaerica)
TGTCCGAAATAGATCAAAGATTCACTGACGTTATTACTCATGGATCACCA
AAATCAAGACGATTTTCTGTACCAAGCAAATTGCTGAGTCAGCATGATGG
TAACCATCATCACCATGACAACCATGCAgtaaacaaaataaagaaaaacg
gTGTCCATCAGCTATCAAACGTAAGGTTGTTTCAAAGTCAAACAAGGccc
aatttctttggaaaatttatATCTGTTATCTATGCAGGGAGGACAGGGGT
ACCTGTAAAAAATGAATGCTGGCAACATGTGTTAAGGGTCCGGTCAGATG
GTCCGGCATGTACGTACCCAGCATCACTTTACCCTTAGAGAGGaatgaat
tttgctgaaaaggtgacccttgagtgtttctgaaaaaatcggcccttaga
gagactagtttaaaattttctgatttttgcaacccttagagagactcaac
cctagtaccccacCCCCAGGATATATACTATGCAAGAAGAAAGAGCCAAT
CCCAAAAGGGTTATAATACTgaaaatgtttacaaaaatgtttagCCTGAA
AGGGAACTGGTCCAGGTTGGAAAAATTTATCGCATTATTTATACTCCTTt
ctaaatttttgctaaatatgCGAAAAAGGGACCCGACTATTAAGGAGCCC
TCTGGGGAGGCGGGTGGCTGATAAAACTATTAGGTACAGCTAAATCGTGT
ATAACGATATTAAGCTAACATTTGCAAAATGATCATTCCTCTGTGGTTGC
ATATACATTGTCTGCATTCTAAAAGTTGTTAATCCAAAGGTCGATAATCT
TAGACTTAGACAACCTTTAGAGAATTTTAAAAAGGGTATTAGTGTAAACT
TGTCATATCTTGCGCTAGACACAATATTAACaaatatgtgttaaaaagaT
CCTGTCTCTTCCTAGGGTATTTTGGAAATGAAAACCTTCAGGACATTGAC
ATATGTGGTTCTTCAAACCATTAGAGAGACTCCCAAGGGGTCTTTTGCAA
GTTATTACTCAGTaacgtagacaggaggggcgcaaaatttgtgtaggggA
GCAGATTTTATGACacggtaattatctttttacattatgaatagataatt
accgTGTCAttaaatctgctctcctacataaattttgcgcccctcttgcc
TAAGCTACTGATTGTGACATCTAGCTTCCTTTTCGATTCGATCTCCTTGG
CTATTAGATTTTTGACGAAAGAAGTAATTCCATCCCGCTTTAGACTAGAG
TCGTTTATATTCCGTGTAATACATTAGGTTGtaatatgataatacgataa
ttgttacggggTGATATCGGTTTGTATCAactacaatacaccttttcgac
cgtagccgccaattgccgcgcggggaTTTTTTGTGCGTTTAACCACCATA
AAACCTTCGcagtcttttttcgcacctatagacaaggtgtaaaaaaagga
ttggatcgagtttatagtggtaaaacggacaaaaaatgcccgcccAGCAT
TTGGtggctacggttgaaaaggtgtatttgtcCATTGTTTTTTTGCCTAT
TTCTTAATACGTATGTCTGATTGTATAACATATGCTACAACTATTCCCAT
ACTATTTGGCACAAAAAGAAACCGCAAttaatttctaaatttcttaaatt
agaGTAGGAAAACAGAGTTATAACATGTGACTTAAGACTTGGGAGcttag
aatctgaggatccaaaagcttaTAAATAGTCCGACTAGGGTTAAAATATG
GCCTGGCAGCCATTTTATCCCTCCTGAAAGTTTCATTCTCGCCTGAACTT
CTGCAAAACGCTAAAATACCCAGAGATGCCAACATTATTCCAACCACCAT
TGTAGACTAACCCCGgtctattaggtacccgagagaaTACAGGCTATGAA
ATAGTTccaattatttcttttttcaggtCAGTGAAGTTTCTTCAACTGAG
GATTTACGTAGACAATCTTACCTGTTACAGAGCAAACTCCAAGATGTCAC
ACACAGCTCGTCCATGCCTAGTTCACCTCTTATGTCAAGGAACAGACGTA
AATCGCACATGTCACCCCACTCGTCTCCCATTGCAACTagaaaaacaaat
aaagatGTTAGCTCAgttaaatcaaatttcaatcagcAAATTTCTGGCGA
TTGGTCTCCCGACGGTTCTTTTGAATTAGACTCGCCCACCCAATGGAGTA
TAGGTAATGGTATCCAACGCTCGTCGCCCTTAGTTACAAAAAACACTAAT
GGTGAACAAATACCACGGCGCAGTCGCAAAACTAAAATGGGGGATATTTC
TCAAAACGAGTCTATTGAAGTGAGATCATTACCATCATCGCCATTAGCAA
TAAACCAAATAAATATGGCAGATGCTTGGCTATCGAGAGAAACCAATTCA
ACGAAATCTGACCAATCAGAAAGCTCGATTGAACGTGAGAGCCAATCAAA
TGAAGCAGCAAATCAAAACCGTTCTAAAACTACGTCAGCCGAAATACTTT
GCAATGCTGTCAAGAGACGCATGCGTAAAATATCAGCATCGGctgaaaat
ttgaatgaaatgaAAGAGTTAAAAGACAAACGTATAAAACAATTAAAAGA
TTCGAAAACAATGCCAAATTCTACATCATTAGATAATATACACTTCGTAT
CTTTGGCACCACACCCTAAATCGATTGCACAGCTACATCAACATTCTTCT
CAgagtaaaacaaaaagatttcatCGATCTTTGGAAAACCTGATTTCGAC
ATCACAAAATAATGGTACGTCGTCAAATGAATCAAACCTAGAAACAAATG
AGATTCTTGGACATAAAAAAACTTCGCCTAGGCGGACGCCTTCACCAGAG
GGCGGTGCCGTACCAAAAACACTTGCAAATGATGAAAATCTTGTTACCAC
CAACGACCACGTCAATGAAGTTCGTAAAAGACGTCAAGCAGCAcgtcaaa
aattaaaacaacgTCAAAATCTATTGAACGGTCTTAACAAAGATATCAAA
ATAGCGAATCGTGTTTTGCGTAATTTACGGACCAGATCGATGCCATTGCT
TGACAAGATGGACATTAATTTTGAAATCCCATACGAATTCATACAAGCTG
TATTAAATTCAAACAATCATGGTGGAATTGATGATATTCATGGACATATT
AATGATTTGATTGTCTAAAACATTTACCGTGACTTTTTTGTTGAATCCAA
GTTTGAAAGCTGCAATCAATTCAAAGTTTTGGTGAAGAAGTAATCAGCTA
TTTTTCACCATGTATTTGGTCACCCATAAAAAAAACACGCCGAATATTTT
TCTCTGTAAATCTCATAACTTTTAGATAGTGTGTCCGGAGAAAATGCAAA
TTTAAACCTACATATCTTGTGATCGAGCCATTGAAACCATTGACTTCGAA
GCCCAacctcctggatgggaaatgaagccacttatttccaatCCAGAACG
CCTAAGTGTGGTTTCTATACAAACGCCGGGTTAAAAGTAAAATCTGTCGc
tgaattaaaaagaaacagccctcaaaaacaaaggatcagcaagatacaat
ccgtcgtcatgattgcggtgTGTTCTAGGCGCTTCtcgatgggaaataag
tggcttcactttttcttgcctgaaaaAGGTtcgagattctactctagccc
ttcaggcttttaGATCTCAATGATCGAAACCCTATTTATCAATGGAGGTC
TAAATAAAAACAGTAGAtgtgctcgccctacgattgaAAACTTTATGAAG
TCATAATCTCATCTGGGTGTGTCAAAAAACGCCCCTATTTCTCGATTTTT
GACgttaaaatttctattgaactGAAATTTGtagttttgaaattgaattt
tttaccttttgtgaaaattatacatttgtgtgttcatttaaaatgacttt
aTGACAATTCCGCTGACTTACGACAATTTTTCACTGCTCACAGATTTTTT
CCTAGTGGTTTTAGGAGTAGGACCCATAagagaggcccccccagcggacc
ctcaattcacgcaatcacgcaattttttttcgaaattcacgcattcacgc
aaattttcctcaagtttcacgcaataaccc Coding sequence (CDS) from alignment at scaffold_19:763212..767291+ >TCONS_00050895 ID=TCONS_00050895|Name=TCONS_00050895|organism=Clytia hemisphaerica|type=CDS|length=2820bp|location=Sequence derived from alignment at scaffold_19:763212..767291+ (Clytia hemisphaerica)
TCCGAAATAGATCAAAGATTCACTGACGTTATTACTCATGGATCACCAAA
ATCAAGACGATTTTCTGTACCAAGCAAATTGCTGAGTCAGCATGATGGTA
ACCATCATCACCATGACAACCATGCAgtaaacaaaataaagaaaaacggT
GTCCATCAGCTATCAAACgtCAGTGAAGTTTCTTCAACTGAGGATTTACG
TAGACAATCTTACCTGTTACAGAGCAAACTCCAAGATGTCACACACAGCT
CGTCCATGCCTAGTTCACCTCTTATGTCAAGGAACAGACGTAAATCGCAC
ATGTCACCCCACTCGTCTCCCATTGCAACTagaaaaacaaataaagatGT
TAGCTCAgttaaatcaaatttcaatcagcAAATTTCTGGCGATTGGTCTC
CCGACGGTTCTTTTGAATTAGACTCGCCCACCCAATGGAGTATAGGTAAT
GGTATCCAACGCTCGTCGCCCTTAGTTACAAAAAACACTAATGGTGAACA
AATACCACGGCGCAGTCGCAAAACTAAAATGGGGGATATTTCTCAAAACG
AGTCTATTGAAGTGAGATCATTACCATCATCGCCATTAGCAATAAACCAA
ATAAATATGGCAGATGCTTGGCTATCGAGAGAAACCAATTCAACGAAATC
TGACCAATCAGAAAGCTCGATTGAACGTGAGAGCCAATCAAATGAAGCAG
CAAATCAAAACCGTTCTAAAACTACGTCAGCCGAAATACTTTGCAATGCT
GTCAAGAGACGCATGCGTAAAATATCAGCATCGGctgaaaatttgaatga
aatgaAAGAGTTAAAAGACAAACGTATAAAACAATTAAAAGATTCGAAAA
CAATGCCAAATTCTACATCATTAGATAATATACACTTCGTATCTTTGGCA
CCACACCCTAAATCGATTGCACAGCTACATCAACATTCTTCTCAgagtaa
aacaaaaagatttcatCGATCTTTGGAAAACCTGATTTCGACATCACAAA
ATAATGGTACGTCGTCAAATGAATCAAACCTAGAAACAAATGAGATTCTT
GGACATAAAAAAACTTCGCCTAGGCGGACGCCTTCACCAGAGGGCGGTGC
CGTACCAAAAACACTTGCAAATGATGAAAATCTTGTTACCACCAACGACC
ACGTCAATGAAGTTCGTAAAAGACGTCAAGCAGCAcgtcaaaaattaaaa
caacgTCAAAATCTATTGAACGGTCTTAACAAAGATATCAAAATAGCGAA
TCGTGTTTTGCGTAATTTACGGACCAGATCGATGCCATTGCTTGACAAGA
TGGACATTAATTTTGAAATCCCATACGAATTCATACAAGCTGTATTAAAT
TCAAACAATCATGGTGGAATTGATGATATTCATGGACATATTAATGATTT
GATTGTCTAATCCGAAATAGATCAAAGATTCACTGACGTTATTACTCATG
GATCACCAAAATCAAGACGATTTTCTGTACCAAGCAAATTGCTGAGTCAG
CATGATGGTAACCATCATCACCATGACAACCATGCAgtaaacaaaataaa
gaaaaacggTGTCCATCAGCTATCAAACgtCAGTGAAGTTTCTTCAACTG
AGGATTTACGTAGACAATCTTACCTGTTACAGAGCAAACTCCAAGATGTC
ACACACAGCTCGTCCATGCCTAGTTCACCTCTTATGTCAAGGAACAGACG
TAAATCGCACATGTCACCCCACTCGTCTCCCATTGCAACTagaaaaacaa
ataaagatGTTAGCTCAgttaaatcaaatttcaatcagcAAATTTCTGGC
GATTGGTCTCCCGACGGTTCTTTTGAATTAGACTCGCCCACCCAATGGAG
TATAGGTAATGGTATCCAACGCTCGTCGCCCTTAGTTACAAAAAACACTA
ATGGTGAACAAATACCACGGCGCAGTCGCAAAACTAAAATGGGGGATATT
TCTCAAAACGAGTCTATTGAAGTGAGATCATTACCATCATCGCCATTAGC
AATAAACCAAATAAATATGGCAGATGCTTGGCTATCGAGAGAAACCAATT
CAACGAAATCTGACCAATCAGAAAGCTCGATTGAACGTGAGAGCCAATCA
AATGAAGCAGCAAATCAAAACCGTTCTAAAACTACGTCAGCCGAAATACT
TTGCAATGCTGTCAAGAGACGCATGCGTAAAATATCAGCATCGGctgaaa
atttgaatgaaatgaAAGAGTTAAAAGACAAACGTATAAAACAATTAAAA
GATTCGAAAACAATGCCAAATTCTACATCATTAGATAATATACACTTCGT
ATCTTTGGCACCACACCCTAAATCGATTGCACAGCTACATCAACATTCTT
CTCAgagtaaaacaaaaagatttcatCGATCTTTGGAAAACCTGATTTCG
ACATCACAAAATAATGGTACGTCGTCAAATGAATCAAACCTAGAAACAAA
TGAGATTCTTGGACATAAAAAAACTTCGCCTAGGCGGACGCCTTCACCAG
AGGGCGGTGCCGTACCAAAAACACTTGCAAATGATGAAAATCTTGTTACC
ACCAACGACCACGTCAATGAAGTTCGTAAAAGACGTCAAGCAGCAcgtca
aaaattaaaacaacgTCAAAATCTATTGAACGGTCTTAACAAAGATATCA
AAATAGCGAATCGTGTTTTGCGTAATTTACGGACCAGATCGATGCCATTG
CTTGACAAGATGGACATTAATTTTGAAATCCCATACGAATTCATACAAGC
TGTATTAAATTCAAACAATCATGGTGGAATTGATGATATTCATGGACATA
TTAATGATTTGATTGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050895-exon-scaffold_19-1491911889:763212..763381 | TCONS_00050895-exon-scaffold_19-1491911889:763212..763381 | Clytia hemisphaerica | exon |
| TCONS_00050895-exon-scaffold_19-1510915933:763212..763381 | TCONS_00050895-exon-scaffold_19-1510915933:763212..763381 | Clytia hemisphaerica | exon |
| TCONS_00050895-exon-scaffold_19-1575043694:763212..763381 | TCONS_00050895-exon-scaffold_19-1575043694:763212..763381 | Clytia hemisphaerica | exon |
| TCONS_00050895-exon-scaffold_19-1491911889:765138..767291 | TCONS_00050895-exon-scaffold_19-1491911889:765138..767291 | Clytia hemisphaerica | exon |
| TCONS_00050895-exon-scaffold_19-1510915933:765138..767291 | TCONS_00050895-exon-scaffold_19-1510915933:765138..767291 | Clytia hemisphaerica | exon |
| TCONS_00050895-exon-scaffold_19-1575043694:765138..767291 | TCONS_00050895-exon-scaffold_19-1575043694:765138..767291 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:763212..767291 + |
Blast
The following BLAST results are available for this feature:
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