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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050896 ID=TCONS_00050896|Name=TCONS_00050896|organism=Clytia hemisphaerica|type=transcript|length=2150bp
GTGAAGTTTCTTCAACTGAGGATTTACGTAGACAATCTTACCTGTTACAG
AGCAAACTCCAAGATGTCACACACAGCTCGTCCATGCCTAGTTCACCTCT
TATGTCAAGGAACAGACGTAAATCGCACATGTCACCCCACTCGTCTCCCA
TTGCAACTagaaaaacaaataaagatGTTAGCTCAgttaaatcaaatttc
aatcagcAAATTTCTGGCGATTGGTCTCCCGACGGTTCTTTTGAATTAGA
CTCGCCCACCCAATGGAGTATAGGTAATGGTATCCAACGCTCGTCGCCCT
TAGTTACAAAAAACACTAATGGTGAACAAATACCACGGCGCAGTCGCAAA
ACTAAAATGGGGGATATTTCTCAAAACGAGTCTATTGAAGTGAGATCATT
ACCATCATCGCCATTAGCAATAAACCAAATAAATATGGCAGATGCTTGGC
TATCGAGAGAAACCAATTCAACGAAATCTGACCAATCAGAAAGCTCGATT
GAACGTGAGAGCCAATCAAATGAAGCAGCAAATCAAAACCGTTCTAAAAC
TACGTCAGCCGAAATACTTTGCAATGCTGTCAAGAGACGCATGCGTAAAA
TATCAGCATCGGctgaaaatttgaatgaaatgaAAGAGTTAAAAGACAAA
CGTATAAAACAATTAAAAGATTCGAAAACAATGCCAAATTCTACATCATT
AGATAATATACACTTCGTATCTTTGGCACCACACCCTAAATCGATTGCAC
AGCTACATCAACATTCTTCTCAgagtaaaacaaaaagatttcatCGATCT
TTGGAAAACCTGATTTCGACATCACAAAATAATGGTACGTCGTCAAATGA
ATCAAACCTAGAAACAAATGAGATTCTTGGACATAAAAAAACTTCGCCTA
GGCGGACGCCTTCACCAGAGGGCGGTGCCGTACCAAAAACACTTGCAAAT
GATGAAAATCTTGTTACCACCAACGACCACGTCAATGAAGTTCGTAAAAG
ACGTCAAGCAGCAcgtcaaaaattaaaacaacgTCAAAATCTATTGAACG
GTCTTAACAAAGATATCAAAATAGCGAATCGTGTTTTGCGTAATTTACGG
ACCAGATCGATGCCATTGCTTGACAAGATGGACATTAATTTTGAAATCCC
ATACGAATTCATACAAGCTGTATTAAATTCAAACAATCATGGTGGAATTG
ATGATATTCATGGACATATTAATGATTTGATTGTCTAAAACATTTACCGT
GACTTTTTTGTTGAATCCAAGTTTGAAAGCTGCAATCAATTCAAAGTTTT
GGTGAAGAAGTAATCAGCTATTTTTCACCATGTATTTGGTCACCCATAAA
AAAAACACGCCGAATATTTTTCTCTGTAAATCTCATAACTTTTAGATAGT
GTGTCCGGAGAAAATGCAAATTTAAACCTACATATCTTGTGATCGAGCCA
TTGAAACCATTGACTTCGAAGCCCAacctcctggatgggaaatgaagcca
cttatttccaatCCAGAACGCCTAAGTGTGGTTTCTATACAAACGCCGGG
TTAAAAGTAAAATCTGTCGctgaattaaaaagaaacagccctcaaaaaca
aaggatcagcaagatacaatccgtcgtcatgattgcggtgTGTTCTAGGC
GCTTCtcgatgggaaataagtggcttcactttttcttgcctgaaaaAGGT
tcgagattctactctagcccttcaggcttttaGATCTCAATGATCGAAAC
CCTATTTATCAATGGAGGTCTAAATAAAAACAGTAGAtgtgctcgcccta
cgattgaAAACTTTATGAAGTCATAATCTCATCTGGGTGTGTCAAAAAAC
GCCCCTATTTCTCGATTTTTGACgttaaaatttctattgaactGAAATTT
Gtagttttgaaattgaattttttaccttttgtgaaaattatacatttgtg
tgttcatttaaaatgactttaTGACAATTCCGCTGACTTACGACAATTTT
TCACTGCTCACAGATTTTTTCCTAGTGGTTTTAGGAGTAGGACCCATAag
agaggcccccccagcggaccctcaattcacgcaatcacgcaatttttttt
cgaaattcacgcattcacgcaaattttcctcaagtttcacgcaataaccc Run BLAST on NCBI transcript from alignment at scaffold_19:763386..767291+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050896 ID=TCONS_00050896|Name=TCONS_00050896|organism=Clytia hemisphaerica|type=transcript|length=3906bp|location=Sequence derived from alignment at scaffold_19:763386..767291+ (Clytia hemisphaerica)
GGTTGTTTCAAAGTCAAACAAGGcccaatttctttggaaaatttatATCT
GTTATCTATGCAGGGAGGACAGGGGTACCTGTAAAAAATGAATGCTGGCA
ACATGTGTTAAGGGTCCGGTCAGATGGTCCGGCATGTACGTACCCAGCAT
CACTTTACCCTTAGAGAGGaatgaattttgctgaaaaggtgacccttgag
tgtttctgaaaaaatcggcccttagagagactagtttaaaattttctgat
ttttgcaacccttagagagactcaaccctagtaccccacCCCCAGGATAT
ATACTATGCAAGAAGAAAGAGCCAATCCCAAAAGGGTTATAATACTgaaa
atgtttacaaaaatgtttagCCTGAAAGGGAACTGGTCCAGGTTGGAAAA
ATTTATCGCATTATTTATACTCCTTtctaaatttttgctaaatatgCGAA
AAAGGGACCCGACTATTAAGGAGCCCTCTGGGGAGGCGGGTGGCTGATAA
AACTATTAGGTACAGCTAAATCGTGTATAACGATATTAAGCTAACATTTG
CAAAATGATCATTCCTCTGTGGTTGCATATACATTGTCTGCATTCTAAAA
GTTGTTAATCCAAAGGTCGATAATCTTAGACTTAGACAACCTTTAGAGAA
TTTTAAAAAGGGTATTAGTGTAAACTTGTCATATCTTGCGCTAGACACAA
TATTAACaaatatgtgttaaaaagaTCCTGTCTCTTCCTAGGGTATTTTG
GAAATGAAAACCTTCAGGACATTGACATATGTGGTTCTTCAAACCATTAG
AGAGACTCCCAAGGGGTCTTTTGCAAGTTATTACTCAGTaacgtagacag
gaggggcgcaaaatttgtgtaggggAGCAGATTTTATGACacggtaatta
tctttttacattatgaatagataattaccgTGTCAttaaatctgctctcc
tacataaattttgcgcccctcttgccTAAGCTACTGATTGTGACATCTAG
CTTCCTTTTCGATTCGATCTCCTTGGCTATTAGATTTTTGACGAAAGAAG
TAATTCCATCCCGCTTTAGACTAGAGTCGTTTATATTCCGTGTAATACAT
TAGGTTGtaatatgataatacgataattgttacggggTGATATCGGTTTG
TATCAactacaatacaccttttcgaccgtagccgccaattgccgcgcggg
gaTTTTTTGTGCGTTTAACCACCATAAAACCTTCGcagtcttttttcgca
cctatagacaaggtgtaaaaaaaggattggatcgagtttatagtggtaaa
acggacaaaaaatgcccgcccAGCATTTGGtggctacggttgaaaaggtg
tatttgtcCATTGTTTTTTTGCCTATTTCTTAATACGTATGTCTGATTGT
ATAACATATGCTACAACTATTCCCATACTATTTGGCACAAAAAGAAACCG
CAAttaatttctaaatttcttaaattagaGTAGGAAAACAGAGTTATAAC
ATGTGACTTAAGACTTGGGAGcttagaatctgaggatccaaaagcttaTA
AATAGTCCGACTAGGGTTAAAATATGGCCTGGCAGCCATTTTATCCCTCC
TGAAAGTTTCATTCTCGCCTGAACTTCTGCAAAACGCTAAAATACCCAGA
GATGCCAACATTATTCCAACCACCATTGTAGACTAACCCCGgtctattag
gtacccgagagaaTACAGGCTATGAAATAGTTccaattatttcttttttc
aggtCAGTGAAGTTTCTTCAACTGAGGATTTACGTAGACAATCTTACCTG
TTACAGAGCAAACTCCAAGATGTCACACACAGCTCGTCCATGCCTAGTTC
ACCTCTTATGTCAAGGAACAGACGTAAATCGCACATGTCACCCCACTCGT
CTCCCATTGCAACTagaaaaacaaataaagatGTTAGCTCAgttaaatca
aatttcaatcagcAAATTTCTGGCGATTGGTCTCCCGACGGTTCTTTTGA
ATTAGACTCGCCCACCCAATGGAGTATAGGTAATGGTATCCAACGCTCGT
CGCCCTTAGTTACAAAAAACACTAATGGTGAACAAATACCACGGCGCAGT
CGCAAAACTAAAATGGGGGATATTTCTCAAAACGAGTCTATTGAAGTGAG
ATCATTACCATCATCGCCATTAGCAATAAACCAAATAAATATGGCAGATG
CTTGGCTATCGAGAGAAACCAATTCAACGAAATCTGACCAATCAGAAAGC
TCGATTGAACGTGAGAGCCAATCAAATGAAGCAGCAAATCAAAACCGTTC
TAAAACTACGTCAGCCGAAATACTTTGCAATGCTGTCAAGAGACGCATGC
GTAAAATATCAGCATCGGctgaaaatttgaatgaaatgaAAGAGTTAAAA
GACAAACGTATAAAACAATTAAAAGATTCGAAAACAATGCCAAATTCTAC
ATCATTAGATAATATACACTTCGTATCTTTGGCACCACACCCTAAATCGA
TTGCACAGCTACATCAACATTCTTCTCAgagtaaaacaaaaagatttcat
CGATCTTTGGAAAACCTGATTTCGACATCACAAAATAATGGTACGTCGTC
AAATGAATCAAACCTAGAAACAAATGAGATTCTTGGACATAAAAAAACTT
CGCCTAGGCGGACGCCTTCACCAGAGGGCGGTGCCGTACCAAAAACACTT
GCAAATGATGAAAATCTTGTTACCACCAACGACCACGTCAATGAAGTTCG
TAAAAGACGTCAAGCAGCAcgtcaaaaattaaaacaacgTCAAAATCTAT
TGAACGGTCTTAACAAAGATATCAAAATAGCGAATCGTGTTTTGCGTAAT
TTACGGACCAGATCGATGCCATTGCTTGACAAGATGGACATTAATTTTGA
AATCCCATACGAATTCATACAAGCTGTATTAAATTCAAACAATCATGGTG
GAATTGATGATATTCATGGACATATTAATGATTTGATTGTCTAAAACATT
TACCGTGACTTTTTTGTTGAATCCAAGTTTGAAAGCTGCAATCAATTCAA
AGTTTTGGTGAAGAAGTAATCAGCTATTTTTCACCATGTATTTGGTCACC
CATAAAAAAAACACGCCGAATATTTTTCTCTGTAAATCTCATAACTTTTA
GATAGTGTGTCCGGAGAAAATGCAAATTTAAACCTACATATCTTGTGATC
GAGCCATTGAAACCATTGACTTCGAAGCCCAacctcctggatgggaaatg
aagccacttatttccaatCCAGAACGCCTAAGTGTGGTTTCTATACAAAC
GCCGGGTTAAAAGTAAAATCTGTCGctgaattaaaaagaaacagccctca
aaaacaaaggatcagcaagatacaatccgtcgtcatgattgcggtgTGTT
CTAGGCGCTTCtcgatgggaaataagtggcttcactttttcttgcctgaa
aaAGGTtcgagattctactctagcccttcaggcttttaGATCTCAATGAT
CGAAACCCTATTTATCAATGGAGGTCTAAATAAAAACAGTAGAtgtgctc
gccctacgattgaAAACTTTATGAAGTCATAATCTCATCTGGGTGTGTCA
AAAAACGCCCCTATTTCTCGATTTTTGACgttaaaatttctattgaactG
AAATTTGtagttttgaaattgaattttttaccttttgtgaaaattataca
tttgtgtgttcatttaaaatgactttaTGACAATTCCGCTGACTTACGAC
AATTTTTCACTGCTCACAGATTTTTTCCTAGTGGTTTTAGGAGTAGGACC
CATAagagaggcccccccagcggaccctcaattcacgcaatcacgcaatt
ttttttcgaaattcacgcattcacgcaaattttcctcaagtttcacgcaa
taaccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050896-exon-scaffold_19-1491911889:763386..763386 | TCONS_00050896-exon-scaffold_19-1491911889:763386..763386 | Clytia hemisphaerica | exon |
| TCONS_00050896-exon-scaffold_19-1510915933:763386..763386 | TCONS_00050896-exon-scaffold_19-1510915933:763386..763386 | Clytia hemisphaerica | exon |
| TCONS_00050896-exon-scaffold_19-1575043694:763386..763386 | TCONS_00050896-exon-scaffold_19-1575043694:763386..763386 | Clytia hemisphaerica | exon |
| TCONS_00050896-exon-scaffold_19-1491911889:765143..767291 | TCONS_00050896-exon-scaffold_19-1491911889:765143..767291 | Clytia hemisphaerica | exon |
| TCONS_00050896-exon-scaffold_19-1510915933:765143..767291 | TCONS_00050896-exon-scaffold_19-1510915933:765143..767291 | Clytia hemisphaerica | exon |
| TCONS_00050896-exon-scaffold_19-1575043694:765143..767291 | TCONS_00050896-exon-scaffold_19-1575043694:765143..767291 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:763386..767291 + |
Blast
The following BLAST results are available for this feature:
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