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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050946 ID=TCONS_00050946|Name=TCONS_00050946|organism=Clytia hemisphaerica|type=transcript|length=2108bp
CATCAATGTAGATAAACATTATAGGATTAAAGATAACTATAAAAGTCGAT
GTGGTTTTTTTGTTCAAGAAGAAGTATATTATTATTACAATAATGTTTAA
AGATAGATAGAAGGACTCACGAACGAATCACTGTTTAGTTTGTTTTTAAC
AGTTCACTGCATCAGTTTAAACTgaggaaaaataaattgaagaaaaagat
ttatacACTGTGATACTGAGAGATATCGTCATTGGAATTTACACTGTCCT
GGTTAAGAGAAAGGAGGGTGGCAAAGAGCttgtaattaaaaaaagagCTG
GCTGAGATATCATTTTTATTCGAAACAGGATTTCATCTGCTATCAAGTTA
AagacaattttataattgatatTTTGGAGCAATTTTTGACGCTATAGAAA
CTCACTGACAGCAAGCATACCAAAAACGTCAAACttcgaagatttttgat
aaaagaattTGATTACACAAGGATAAATCTATATCGCTTAAATAGCAAAA
CTGATttaagaaatcttcaaaaaacaaacattttcacaaaaacatGGGAC
GTAACTCTAACAAGAACGTTCGCAAGAGTGGATACATATTCGAATACCGT
TTCACGTTATTGGGAGGTGCGAAAACAGGAAAAACGTCAGTGTTAAATCG
ATTTATCAGTGATACATTCACGCACAGATATCGGCCTACGATTGAGGACC
ATATTACACATACGATAGACCACAAGGGCAATATCTGTGTATGTCTTTTT
GTTGATACATGTGGTGGCAATGACTTTCCTGCTATGAAAAGATTAGCAAT
CACCAAAGGTAATGCTTTCCTACTATTATATTCAATCGATAATCGAAAAT
CATTCCAAGAGGCGAAGCGAACAGCAGAGGAAATAATCAGTTTGAAAGAC
ACTTCTGAGGATGTTAAAATAATGTTAATTGCTAATAAGACTGATTTGGA
TGATAGGAGAGAGGTTTCTAAACAAGAGGGGTTGGATTTAGTCGATGATT
TAAATACTGGTAATGTATCTTCAATGTTTTTTGAGGTCAGTGCATTCACA
GGTAATGGAATTAAAGACATTTTCACTGAACTATTACAATTGTTTATACC
AGAGACACCGGACGTTGTTATCACTACTGAAAAAAGTGCTTTTTCTCGTA
TGAGCTTCCGTCGGCGTTCAAAAAAGAAGCAATTACGTAAACAAAAGAAC
TTGGAAAGTATTAACAATAATGACAGCAATTATTTCAGTGATACAGAGGT
TGAGCCGATGAGCAAAAACTTACAAACACCGGAGCACGGACAGTTAGTCC
GTTCCTCGTCCGCCACCTCGCATATAACCGACAGCGACAGTGGTATGGAA
TCCAGCCCTAACACGTCCCCGACTTTTGGACGTAAAGACGGGGCATCGCC
GACACGACGTGAATCTTCAGCTAAGGAGATCTTACGTAAGACATTTGGAA
GTATGCAAAGAATATTTGTCAATAAACATGAACAAAATAATAACAGTCCA
CATCTTGTCAGGTCAGGGACAGTGGAATCTATACGATCATTATCAATGAC
CCGAAACAAACAGACTTCTGTGTAGGAAAAAATGCTGAAATTACTGCTGC
TTTAAgcctttttttattataagcatatacAAATTTAGTCCTAAATGGAA
TTATTGAAACATTGTTTATTAAAAGCATCCGATTGAGAATACttatcaaa
aatattaattACACTGAGATAGCTACATACTTGCGGTTAAAACGGTAGCC
CACTTTACATTCTCaaacttttaagattttttagatgtgatgcttataaa
aatgaaacGCCTGCATCTCTTTGAGGTAGTATTGCATTATGATGGTCATC
ATGGCAACAAATTGAGCCATATAAGGTTGTACCTAGATTagtattattta
ttttatttatccGTTTTATTGAATAGAGTCTCGTGGACAAAAATAAGTCC
CTTTCAAATGAGGAATTATATATGAAGAGATTTTGATGTAAATAAAAAGA
TTGCGTATACAATAAGTAGAAGAGGATAGATTGTATATTTTGACTAAtac
tatttttttgtaaatacaaAGATGTGACGGTAATTGGTAAAGACGAAAAC
AAACCTAC Run BLAST on NCBI protein sequence of TCONS_00050946-protein >TCONS_00050946-protein ID=TCONS_00050946-protein|Name=TCONS_00050946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MGRNSNKNVRKSGYIFEYRFTLLGGAKTGKTSVLNRFISDTFTHRYRPTI
EDHITHTIDHKGNICVCLFVDTCGGNDFPAMKRLAITKGNAFLLLYSIDN
RKSFQEAKRTAEEIISLKDTSEDVKIMLIANKTDLDDRREVSKQEGLDLV
DDLNTGNVSSMFFEVSAFTGNGIKDIFTELLQLFIPETPDVVITTEKSAF
SRMSFRRRSKKKQLRKQKNLESINNNDSNYFSDTEVEPMSKNLQTPEHGQ
LVRSSSATSHITDSDSGMESSPNTSPTFGRKDGASPTRRESSAKEILRKT
FGSMQRIFVNKHEQNNNSPHLVRSGTVESIRSLSMTRNKQTSV Run BLAST on NCBI transcript from alignment at scaffold_19:289630..291737 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050946 ID=TCONS_00050946|Name=TCONS_00050946|organism=Clytia hemisphaerica|type=transcript|length=2108bp|location=Sequence derived from alignment at scaffold_19:289630..291737 (Clytia hemisphaerica)
GTAGGTTTGTTTTCGTCTTTACCAATTACCGTCACATCTttgtatttaca
aaaaaatagtaTTAGTCAAAATATACAATCTATCCTCTTCTACTTATTGT
ATACGCAATCTTTTTATTTACATCAAAATCTCTTCATATATAATTCCTCA
TTTGAAAGGGACTTATTTTTGTCCACGAGACTCTATTCAATAAAACggat
aaataaaataaataatactAATCTAGGTACAACCTTATATGGCTCAATTT
GTTGCCATGATGACCATCATAATGCAATACTACCTCAAAGAGATGCAGGC
gtttcatttttataagcatcacatctaaaaaatcttaaaagtttGAGAAT
GTAAAGTGGGCTACCGTTTTAACCGCAAGTATGTAGCTATCTCAGTGTaa
ttaatatttttgataaGTATTCTCAATCGGATGCTTTTAATAAACAATGT
TTCAATAATTCCATTTAGGACTAAATTTgtatatgcttataataaaaaaa
ggcTTAAAGCAGCAGTAATTTCAGCATTTTTTCCTACACAGAAGTCTGTT
TGTTTCGGGTCATTGATAATGATCGTATAGATTCCACTGTCCCTGACCTG
ACAAGATGTGGACTGTTATTATTTTGTTCATGTTTATTGACAAATATTCT
TTGCATACTTCCAAATGTCTTACGTAAGATCTCCTTAGCTGAAGATTCAC
GTCGTGTCGGCGATGCCCCGTCTTTACGTCCAAAAGTCGGGGACGTGTTA
GGGCTGGATTCCATACCACTGTCGCTGTCGGTTATATGCGAGGTGGCGGA
CGAGGAACGGACTAACTGTCCGTGCTCCGGTGTTTGTAAGTTTTTGCTCA
TCGGCTCAACCTCTGTATCACTGAAATAATTGCTGTCATTATTGTTAATA
CTTTCCAAGTTCTTTTGTTTACGTAATTGCTTCTTTTTTGAACGCCGACG
GAAGCTCATACGAGAAAAAGCACTTTTTTCAGTAGTGATAACAACGTCCG
GTGTCTCTGGTATAAACAATTGTAATAGTTCAGTGAAAATGTCTTTAATT
CCATTACCTGTGAATGCACTGACCTCAAAAAACATTGAAGATACATTACC
AGTATTTAAATCATCGACTAAATCCAACCCCTCTTGTTTAGAAACCTCTC
TCCTATCATCCAAATCAGTCTTATTAGCAATTAACATTATTTTAACATCC
TCAGAAGTGTCTTTCAAACTGATTATTTCCTCTGCTGTTCGCTTCGCCTC
TTGGAATGATTTTCGATTATCGATTGAATATAATAGTAGGAAAGCATTAC
CTTTGGTGATTGCTAATCTTTTCATAGCAGGAAAGTCATTGCCACCACAT
GTATCAACAAAAAGACATACACAGATATTGCCCTTGTGGTCTATCGTATG
TGTAATATGGTCCTCAATCGTAGGCCGATATCTGTGCGTGAATGTATCAC
TGATAAATCGATTTAACACTGACGTTTTTCCTGTTTTCGCACCTCCCAAT
AACGTGAAACGGTATTCGAATATGTATCCACTCTTGCGAACGTTCTTGTT
AGAGTTACGTCCCatgtttttgtgaaaatgtttgttttttgaagatttct
taaATCAGTTTTGCTATTTAAGCGATATAGATTTATCCTTGTGTAATCAa
attcttttatcaaaaatcttcgaaGTTTGACGTTTTTGGTATGCTTGCTG
TCAGTGAGTTTCTATAGCGTCAAAAATTGCTCCAAAatatcaattataaa
attgtctTTAACTTGATAGCAGATGAAATCCTGTTTCGAATAAAAATGAT
ATCTCAGCCAGctctttttttaattacaaGCTCTTTGCCACCCTCCTTTC
TCTTAACCAGGACAGTGTAAATTCCAATGACGATATCTCTCAGTATCACA
GTgtataaatctttttcttcaatttatttttcctcAGTTTAAACTGATGC
AGTGAACTGTTAAAAACAAACTAAACAGTGATTCGTTCGTGAGTCCTTCT
ATCTATCTTTAAACATTATTGTAATAATAATATACTTCTTCTTGAACAAA
AAAACCACATCGACTTTTATAGTTATCTTTAATCCTATAATGTTTATCTA
CATTGATG Coding sequence (CDS) from alignment at scaffold_19:289630..291737 >TCONS_00050946 ID=TCONS_00050946|Name=TCONS_00050946|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at scaffold_19:289630..291737 (Clytia hemisphaerica)
CTACACAGAAGTCTGTTTGTTTCGGGTCATTGATAATGATCGTATAGATT
CCACTGTCCCTGACCTGACAAGATGTGGACTGTTATTATTTTGTTCATGT
TTATTGACAAATATTCTTTGCATACTTCCAAATGTCTTACGTAAGATCTC
CTTAGCTGAAGATTCACGTCGTGTCGGCGATGCCCCGTCTTTACGTCCAA
AAGTCGGGGACGTGTTAGGGCTGGATTCCATACCACTGTCGCTGTCGGTT
ATATGCGAGGTGGCGGACGAGGAACGGACTAACTGTCCGTGCTCCGGTGT
TTGTAAGTTTTTGCTCATCGGCTCAACCTCTGTATCACTGAAATAATTGC
TGTCATTATTGTTAATACTTTCCAAGTTCTTTTGTTTACGTAATTGCTTC
TTTTTTGAACGCCGACGGAAGCTCATACGAGAAAAAGCACTTTTTTCAGT
AGTGATAACAACGTCCGGTGTCTCTGGTATAAACAATTGTAATAGTTCAG
TGAAAATGTCTTTAATTCCATTACCTGTGAATGCACTGACCTCAAAAAAC
ATTGAAGATACATTACCAGTATTTAAATCATCGACTAAATCCAACCCCTC
TTGTTTAGAAACCTCTCTCCTATCATCCAAATCAGTCTTATTAGCAATTA
ACATTATTTTAACATCCTCAGAAGTGTCTTTCAAACTGATTATTTCCTCT
GCTGTTCGCTTCGCCTCTTGGAATGATTTTCGATTATCGATTGAATATAA
TAGTAGGAAAGCATTACCTTTGGTGATTGCTAATCTTTTCATAGCAGGAA
AGTCATTGCCACCACATGTATCAACAAAAAGACATACACAGATATTGCCC
TTGTGGTCTATCGTATGTGTAATATGGTCCTCAATCGTAGGCCGATATCT
GTGCGTGAATGTATCACTGATAAATCGATTTAACACTGACGTTTTTCCTG
TTTTCGCACCTCCCAATAACGTGAAACGGTATTCGAATATGTATCCACTC
TTGCGAACGTTCTTGTTAGAGTTACGTCCCat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050946-exon-scaffold_19-1491911889:289630..291737 | TCONS_00050946-exon-scaffold_19-1491911889:289630..291737 | Clytia hemisphaerica | exon |
| TCONS_00050946-exon-scaffold_19-1510915933:289630..291737 | TCONS_00050946-exon-scaffold_19-1510915933:289630..291737 | Clytia hemisphaerica | exon |
| TCONS_00050946-exon-scaffold_19-1575043694:289630..291737 | TCONS_00050946-exon-scaffold_19-1575043694:289630..291737 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:289630..291737 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00050946 vs. Swiss-Prot (Human)
Match: DIRA2 (GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIRAS2 PE=1 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.947e-32 Identity = 65/167 (38.92%), Postives = 91/167 (54.49%), Query Frame = 1
Query: 592 EYRFTLLGGAKTGKTSVLNRFISDTFTHRYRPTIEDHITHTIDHKGNICVCLFVDTCGGNDFPAMKRLAITKGNAFLLLYSIDNRKSFQEAKRTAEEIISLKDTSEDVKIMLIANKTDLDDRREVSKQEGLDLVDDLNTGNVSSMFFEVSAFTGNGIKDIFTELLQL 1092
+YR + G GK+S++ RF+ TF Y PT+ED I +IC DT G + FPAM+RL+I+KG+AF+L+YSI +R+S +E K E+I +K E + IML+ NK D REV E L F E SA + +K++F ELL L
Sbjct: 7 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-----FMETSAKLNHNVKELFQELLNL 168
The following BLAST results are available for this feature:
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