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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050948 ID=TCONS_00050948|Name=TCONS_00050948|organism=Clytia hemisphaerica|type=transcript|length=1681bp
CGCCTGCGTCAAACTTGGTATCATCCCAGAAGGCTTCCCAAAGATTGGAT
CCGCTGACATATCAATCATCGAACACACAAAGAGTCCATGTGGTTGCCCA
ACACGCACTCTACCACCGGGTCGTCCTGACAAACTACCCTTCGAGGCTAC
TCCAGAAAACAACAGCAAGATGAGAGAGTGGCTGATCAATCGTTATGCTG
CATCCACATTTAACAAATGCCCACATCAGCAACTCCCAGGGATGTCTGGT
CCTGAAATCAGGTTGCATGTCAATCCAAATGCAACCCCAACAGCAATCCA
TAAACCCATCCCAGTGCCGCTGCATTGGCAAGCTGAAGTTGAACAACAAA
TTAGAGATGATGTCGCCCTTGGTGTGTTGGAAGAAGTGCCGATGGGTGAA
ACTTCAGAATGGTGCCACCGCATGGTCATCGTTAGGAAGCCAGACGGTAA
ACCCAGAAGAACGGTTGACCTCTCTCCACTCAACAAGCACTGCCTTCGTG
AAACCCACCATGTCCAACCACCCTTCCAGCAAGCCAAATCCATCCCACCG
ATGACATGGAAGACGGTTACTGACGCGTGGAATGGTTATCATTCCGTCCC
GATCCACCCTGATGACCGCCACCTCACAACATTCCTCACCCCCTGGGGAA
GATTCAGATATCGTACGGCACCTCAAGGATTCCTAGCAAGCGGCGATGGA
TATGCAAGACGATTTGACGAGATCATCAAAGATGTTCCACGGAAAACAAA
GTGTGTTGATGATACAGCCATGTGGGACAATGAACTCTCTGATCATTGGT
GGCGTGTCATTGACTTTCTCGACCTTCTTGGCAAGAACGGTATCGTCCTG
AATGAATCCAAGTTCCAATTTGCAGGCCGAGAAGTCCAATTCGCcggttt
tcatgtaacagaaagagAAATCAGACCGCTTGAGAAGTTCCTCAGGGCCA
TTCGCGACTTCCCTACTCCCACCAAACTGAGTGATGTTAGATCGTGGTTT
GGGCTGGTCAACCAAGTCGGTCATTATGCCCAACTGATAGAGATCATGGC
TCCGTTCAAGCACCTTCTAAGTCCCAAATCAAAGTTTGCTTGGTCTGATG
AACTTGAATCCGCCTTTCAATCTTCAAAGAATCTCATCATCGACGCTATC
AAGAGAGGAGTGGAAATCTTTGATATGGAGAAACTCACTTGTCTTCGTCC
TGATTGGTCCAAGATAGGAATCGGTTTCTATCTATGCCAAAAGCACTGCA
ACTGTACCTCCATCACACCGGACTGCTGCGAAGATGGTTGGAAGATCACA
CTTGCCGGGTCACGATTTCTCAAACCCGCCGAAACACGTTATGCCCCCGT
GGAAGGAGAAGCATTAGCAATAGCTTACTCCCTGAAACAAACCAAATTCT
TCACACTTGGTTGTGATCGTTTAATCGTTGTTACCGACCATGAACCATTG
ACCAAAGTTCTTGGTGATCGCACCCTCGACGAGATTTCCAACACAAGACT
CTTCAAACTTAAGCAGCGCACTCTTCCCTGGAGATTCATCATTAAACATC
TACCAGGAAAATCTAATCACTTCGCAAACGCAACATCACGAAGCCCTGTC
AACAACCCAGAAGATGACGATGACTTGCTTGATGACGAGGACGACATCGA
CACTGAACTGCAGCCCTCTACATTTCAGAAG Run BLAST on NCBI protein sequence of TCONS_00050948-protein >TCONS_00050948-protein ID=TCONS_00050948-protein|Name=TCONS_00050948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=560bp
ACVKLGIIPEGFPKIGSADISIIEHTKSPCGCPTRTLPPGRPDKLPFEAT
PENNSKMREWLINRYAASTFNKCPHQQLPGMSGPEIRLHVNPNATPTAIH
KPIPVPLHWQAEVEQQIRDDVALGVLEEVPMGETSEWCHRMVIVRKPDGK
PRRTVDLSPLNKHCLRETHHVQPPFQQAKSIPPMTWKTVTDAWNGYHSVP
IHPDDRHLTTFLTPWGRFRYRTAPQGFLASGDGYARRFDEIIKDVPRKTK
CVDDTAMWDNELSDHWWRVIDFLDLLGKNGIVLNESKFQFAGREVQFAGF
HVTEREIRPLEKFLRAIRDFPTPTKLSDVRSWFGLVNQVGHYAQLIEIMA
PFKHLLSPKSKFAWSDELESAFQSSKNLIIDAIKRGVEIFDMEKLTCLRP
DWSKIGIGFYLCQKHCNCTSITPDCCEDGWKITLAGSRFLKPAETRYAPV
EGEALAIAYSLKQTKFFTLGCDRLIVVTDHEPLTKVLGDRTLDEISNTRL
FKLKQRTLPWRFIIKHLPGKSNHFANATSRSPVNNPEDDDDLLDDEDDID
TELQPSTFQK Run BLAST on NCBI transcript from alignment at scaffold_19:333465..335145 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050948 ID=TCONS_00050948|Name=TCONS_00050948|organism=Clytia hemisphaerica|type=transcript|length=1681bp|location=Sequence derived from alignment at scaffold_19:333465..335145 (Clytia hemisphaerica)
CTTCTGAAATGTAGAGGGCTGCAGTTCAGTGTCGATGTCGTCCTCGTCAT
CAAGCAAGTCATCGTCATCTTCTGGGTTGTTGACAGGGCTTCGTGATGTT
GCGTTTGCGAAGTGATTAGATTTTCCTGGTAGATGTTTAATGATGAATCT
CCAGGGAAGAGTGCGCTGCTTAAGTTTGAAGAGTCTTGTGTTGGAAATCT
CGTCGAGGGTGCGATCACCAAGAACTTTGGTCAATGGTTCATGGTCGGTA
ACAACGATTAAACGATCACAACCAAGTGTGAAGAATTTGGTTTGTTTCAG
GGAGTAAGCTATTGCTAATGCTTCTCCTTCCACGGGGGCATAACGTGTTT
CGGCGGGTTTGAGAAATCGTGACCCGGCAAGTGTGATCTTCCAACCATCT
TCGCAGCAGTCCGGTGTGATGGAGGTACAGTTGCAGTGCTTTTGGCATAG
ATAGAAACCGATTCCTATCTTGGACCAATCAGGACGAAGACAAGTGAGTT
TCTCCATATCAAAGATTTCCACTCCTCTCTTGATAGCGTCGATGATGAGA
TTCTTTGAAGATTGAAAGGCGGATTCAAGTTCATCAGACCAAGCAAACTT
TGATTTGGGACTTAGAAGGTGCTTGAACGGAGCCATGATCTCTATCAGTT
GGGCATAATGACCGACTTGGTTGACCAGCCCAAACCACGATCTAACATCA
CTCAGTTTGGTGGGAGTAGGGAAGTCGCGAATGGCCCTGAGGAACTTCTC
AAGCGGTCTGATTTctctttctgttacatgaaaaccgGCGAATTGGACTT
CTCGGCCTGCAAATTGGAACTTGGATTCATTCAGGACGATACCGTTCTTG
CCAAGAAGGTCGAGAAAGTCAATGACACGCCACCAATGATCAGAGAGTTC
ATTGTCCCACATGGCTGTATCATCAACACACTTTGTTTTCCGTGGAACAT
CTTTGATGATCTCGTCAAATCGTCTTGCATATCCATCGCCGCTTGCTAGG
AATCCTTGAGGTGCCGTACGATATCTGAATCTTCCCCAGGGGGTGAGGAA
TGTTGTGAGGTGGCGGTCATCAGGGTGGATCGGGACGGAATGATAACCAT
TCCACGCGTCAGTAACCGTCTTCCATGTCATCGGTGGGATGGATTTGGCT
TGCTGGAAGGGTGGTTGGACATGGTGGGTTTCACGAAGGCAGTGCTTGTT
GAGTGGAGAGAGGTCAACCGTTCTTCTGGGTTTACCGTCTGGCTTCCTAA
CGATGACCATGCGGTGGCACCATTCTGAAGTTTCACCCATCGGCACTTCT
TCCAACACACCAAGGGCGACATCATCTCTAATTTGTTGTTCAACTTCAGC
TTGCCAATGCAGCGGCACTGGGATGGGTTTATGGATTGCTGTTGGGGTTG
CATTTGGATTGACATGCAACCTGATTTCAGGACCAGACATCCCTGGGAGT
TGCTGATGTGGGCATTTGTTAAATGTGGATGCAGCATAACGATTGATCAG
CCACTCTCTCATCTTGCTGTTGTTTTCTGGAGTAGCCTCGAAGGGTAGTT
TGTCAGGACGACCCGGTGGTAGAGTGCGTGTTGGGCAACCACATGGACTC
TTTGTGTGTTCGATGATTGATATGTCAGCGGATCCAATCTTTGGGAAGCC
TTCTGGGATGATACCAAGTTTGACGCAGGCG Coding sequence (CDS) from alignment at scaffold_19:333465..335145 >TCONS_00050948 ID=TCONS_00050948|Name=TCONS_00050948|organism=Clytia hemisphaerica|type=CDS|length=1680bp|location=Sequence derived from alignment at scaffold_19:333465..335145 (Clytia hemisphaerica)
CTTCTGAAATGTAGAGGGCTGCAGTTCAGTGTCGATGTCGTCCTCGTCAT
CAAGCAAGTCATCGTCATCTTCTGGGTTGTTGACAGGGCTTCGTGATGTT
GCGTTTGCGAAGTGATTAGATTTTCCTGGTAGATGTTTAATGATGAATCT
CCAGGGAAGAGTGCGCTGCTTAAGTTTGAAGAGTCTTGTGTTGGAAATCT
CGTCGAGGGTGCGATCACCAAGAACTTTGGTCAATGGTTCATGGTCGGTA
ACAACGATTAAACGATCACAACCAAGTGTGAAGAATTTGGTTTGTTTCAG
GGAGTAAGCTATTGCTAATGCTTCTCCTTCCACGGGGGCATAACGTGTTT
CGGCGGGTTTGAGAAATCGTGACCCGGCAAGTGTGATCTTCCAACCATCT
TCGCAGCAGTCCGGTGTGATGGAGGTACAGTTGCAGTGCTTTTGGCATAG
ATAGAAACCGATTCCTATCTTGGACCAATCAGGACGAAGACAAGTGAGTT
TCTCCATATCAAAGATTTCCACTCCTCTCTTGATAGCGTCGATGATGAGA
TTCTTTGAAGATTGAAAGGCGGATTCAAGTTCATCAGACCAAGCAAACTT
TGATTTGGGACTTAGAAGGTGCTTGAACGGAGCCATGATCTCTATCAGTT
GGGCATAATGACCGACTTGGTTGACCAGCCCAAACCACGATCTAACATCA
CTCAGTTTGGTGGGAGTAGGGAAGTCGCGAATGGCCCTGAGGAACTTCTC
AAGCGGTCTGATTTctctttctgttacatgaaaaccgGCGAATTGGACTT
CTCGGCCTGCAAATTGGAACTTGGATTCATTCAGGACGATACCGTTCTTG
CCAAGAAGGTCGAGAAAGTCAATGACACGCCACCAATGATCAGAGAGTTC
ATTGTCCCACATGGCTGTATCATCAACACACTTTGTTTTCCGTGGAACAT
CTTTGATGATCTCGTCAAATCGTCTTGCATATCCATCGCCGCTTGCTAGG
AATCCTTGAGGTGCCGTACGATATCTGAATCTTCCCCAGGGGGTGAGGAA
TGTTGTGAGGTGGCGGTCATCAGGGTGGATCGGGACGGAATGATAACCAT
TCCACGCGTCAGTAACCGTCTTCCATGTCATCGGTGGGATGGATTTGGCT
TGCTGGAAGGGTGGTTGGACATGGTGGGTTTCACGAAGGCAGTGCTTGTT
GAGTGGAGAGAGGTCAACCGTTCTTCTGGGTTTACCGTCTGGCTTCCTAA
CGATGACCATGCGGTGGCACCATTCTGAAGTTTCACCCATCGGCACTTCT
TCCAACACACCAAGGGCGACATCATCTCTAATTTGTTGTTCAACTTCAGC
TTGCCAATGCAGCGGCACTGGGATGGGTTTATGGATTGCTGTTGGGGTTG
CATTTGGATTGACATGCAACCTGATTTCAGGACCAGACATCCCTGGGAGT
TGCTGATGTGGGCATTTGTTAAATGTGGATGCAGCATAACGATTGATCAG
CCACTCTCTCATCTTGCTGTTGTTTTCTGGAGTAGCCTCGAAGGGTAGTT
TGTCAGGACGACCCGGTGGTAGAGTGCGTGTTGGGCAACCACATGGACTC
TTTGTGTGTTCGATGATTGATATGTCAGCGGATCCAATCTTTGGGAAGCC
TTCTGGGATGATACCAAGTTTGACGCAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050948-exon-scaffold_19-1491911889:333465..335145 | TCONS_00050948-exon-scaffold_19-1491911889:333465..335145 | Clytia hemisphaerica | exon |
| TCONS_00050948-exon-scaffold_19-1510915933:333465..335145 | TCONS_00050948-exon-scaffold_19-1510915933:333465..335145 | Clytia hemisphaerica | exon |
| TCONS_00050948-exon-scaffold_19-1575043694:333465..335145 | TCONS_00050948-exon-scaffold_19-1575043694:333465..335145 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:333465..335145 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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