TCONS_00051005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051005
Unique NameTCONS_00051005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051005 ID=TCONS_00051005|Name=TCONS_00051005|organism=Clytia hemisphaerica|type=transcript|length=2490bp
CACCAGAATAAATTCAGTAGCCGAACTAGACAGTATTCCAATCAAGTAAC
CAACATCATATTATAGCTTAAAATCTGGAGAATTGTAAGGTGCTGGCTAG
TAACATCTTATTAATATCTCTTCTTTTTACATGTCAGAATGCtgacaaaa
aaaggcactttcttgcaaaaatatttacaaaatattgaaatataataatc
GTAAGTAAAATTCCTCCAAAAAGATTTAGTATATGAAGGTGATGCTCATT
GAATTGATATTAGGAAGAAGTCTTTGATTCTCTCAAAAACGTCTCTTAAA
AGCAAATTGGTGCACCGATTGGGGTACcatgctttttaaaataaccTGTT
TGCTATTGTTTTatagatatttgaaaaaagtaactATCCTATATTATAAT
GGTGTTGCAAGCAATTTTGCGaaatcgaattttttttgtagCACTTCTGG
TTTTACTATGGGTTTTGATTTACATGATGCCAACGTTGATGCAAGGATAC
AAAGAGGAGAGAGTGGACTTGCACAGACATGGAAGAACGTTAAATAAAAA
GCCTGTTGTTGAATTGAGGAAGGAAGAAATACCAGTCAATCATCTACAAG
CAGGTTGGTTTCACCAAGGGGAAATGTGTTTAGATGCAATCAACAGTAAG
GAAGATGGGAAGCCAGGCATCTTCAAATGTCATGATACTGGAGATAAACA
GTTTTGGTTTATCATGAAAGATTCAAATGGGTTGCGGAACAAACGCTTGT
GTGTAGAAGGGCCGAAAGATTTGGGAAAACCAGGAGAAGTGAAACTGCAG
AATTGTGATGCTGGAGTAGAAAATcaaGCTTGGGTGTATGAGAGTGAGAA
CTTGAAATTATCTGGTGGTGAATTATGTTTGGAATCGagcttgaaaacta
aaaaagtcAGAGTTGAGGTTTGTGACagtgaaaagaaaaatcaaaaatgg
caGTTGAAAAAACTGGAAGGTATTTAATAAAGGATTGTAACTTCTTGGAA
AACATTGTTTGAGAAGTGTTACTTACAATCTTTGAGatgggctggagttt
ttacaagagacttcactaattggttatttgaagtaatagagatgacgcgt
tctttagaaaaagtaacaaaattgttttattacaggttaacgaccaacca
aatcaaacgagagcttgtaaaaactccagcttgtccccaaTCTTTGGATC
TTAAATCTGAAACAAAAATCTAATATTGattccaagaagttttttttatc
tttgaatcAGATAATTATATGTCTAAGTTATTTATTTATATACAAAGGCA
CTAATGTGTTTGTTTGTGTTATCCGTAGATGCTATATATTTTTGTACTAT
GGTCAAGAAgacttttatattttatataataTTAGGTTGAGTAAATGTTT
GTTTTCTAACTGAAATGGCTTTGATGGCTCGCAACGAAATTCTgccccca
gctggcacacaacgttgtttcaacgctcatctaacgttatatggacgttg
tgaacattagataaacgttgaaataacgttgtgtgccagctgcaTATGGC
CAACAAAAACAATCTACCGATTCTGtagattatattttttattctgctga
gaaactttttgattttttcgaagcTATATGCAATCgtctaattcatgata
tgcaccactgcaatgacctcacgaaattatgcaactttctgtttttgttc
cacccaaaacgtcactttttctattgtttaagtgacgtatttgGTGGATA
ATTTcgaaagttctcagaagactctccagtggtgcatatcatgaatacta
atGAAGTATAATGGAAGGTTAGTTGAGCGGATCTCCTACGAAGGATTTGC
TGCAACCTGTTTCCTACCTAAGTTACGCGGCACGTCTTGCTTTGAAACAA
ATGCTATAGTGAAAATGATACTTTCTGCTGGGTTTTGAAAAACGTAGGCG
CACGTCTGAAAAGTTGTGAAACCTTTAGGCATTTCTTGTCAGGAAAAAGT
TGAAGGTTCACTTCTAGCCATTTGGTTTATAATTCATTGTATAATGCcga
attattttgttttcgaTATTTTCTCCTACTgttttcaatatcatttttgg
acctaccccggtggggtggaggtcctataaattaacctgtgttcgttcgt
tcgttcgttcgttcgtctgttaccaacttttctcaggattgaatcatagg
aatcttttgatttttggtccAAAGGTGCGAaacggtggtggccaaaatgt
gacggagcccgattttcgaaaaaaaaattttgggggcaaatttgggccaa
aaaacggctaaaaaacgggttttttggactttgtgaaaaattggatcatt
aattttttctgattttttgcatgaaagtagggtaccatcataggtaaaag
atggctcaattagatttttgcaaaaaaatttatttggcttaaaaaacgca
tgtttatctataagaatcactattaataagcatatatcaa
Run BLAST on NCBI

transcript from alignment at scaffold_192:16093..20737+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051005 ID=TCONS_00051005|Name=TCONS_00051005|organism=Clytia hemisphaerica|type=transcript|length=4645bp|location=Sequence derived from alignment at scaffold_192:16093..20737+ (Clytia hemisphaerica)
CACCAGAATAAATTCAGTAGCCGAACTAGACAGTATTCCAATCAAGTAAC
CAACATCATATTATAGCTTAAAATCTGGAGAATTGTAAGGTGCTGGCTAG
TAACATCTTATTAATATCTCTTCTTTTTACATGTCAGAATGCtgacaaaa
aaaggcactttcttgcaaaaatatttacaaaatattgaaatataataatc
GTAAGTAAAATTCCTCCAAAAAGATTTAGTATATGAAGGTGATGCTCATT
GAATTGATATTAGGAAGAAGTCTTTGATTCTCTCAAAAACGTCTCTTAAA
AGCAAATTGGTGCACCGATTGGGGTACcatgctttttaaaataaccTGTT
TGCTATTGTTTTatagatatttgaaaaaagtaactATCCTATATTATAAT
GGTGTTGCAAGCAATTTTGCGaaatcgaattttttttgtagCACTTCTGG
TTTTACTATGGGTTTTGATTTACATGATGCCAACGTTGATGCAAGGATAC
AAAGAGGAGAGGTTGGTTATCATTCAAGAATGTTTTATTAAAGCTTGTAA
CTCTTGTTCTTTTTATACGTAATTTAATTACAATCACATTTTATGGATTT
GTGATAGATTTCTACATAGTACATTGTTATTTTGTTCATAAGATGAAATA
TTACGATTTCAATTTTAATGGGCTACTCCacaaatagtctgtacccccca
TTTTGaagaggtgtgacgtccagggtggcctggaaaataaaaaaaatcca
gggtggtcactAAAATTGGGTTAAAAAaccagggtggtcagtataacgag
gtcgaaaatGTGGTcccaaagaaatggaagaaaaaaatccaaggtcctga
aaaattggaaaataatcTAGGGGACTcaccttaaaaaaaaaagatctcct
caacatagggagtacagattttttctggaatagcccaatttgTAGGTTTG
AATTTTATGATAGTAAACACTTAATGAAAGGATCTAGGATGAACTAGACA
TCGGTACTATGATATGACTTTAGAGTGGACTTGCACAGACATGGAAGAAC
GTTAAATAAAAAGCCTGTTGTTGAATTGAGGAAGGAAGAAATACCAGTCA
ATCATCTACAAGCAGGGTTTGTTGGAATTCTATTCTAAAAAACTATCGAA
TTATCATGCCCTTTTTAATTGCTGTATTTTTAGGATTTAAGGTTGTATCT
TTTAGAATCATTATACAGTATAATATCACATTGTATCCAATCTTAGatac
aaattaaaaagaaagtccTTCTGAGccacttgatttttttaattgcaaTC
CATTTCCCCTATCGTTTCTATAGTTGGTTTCACCAAGGGGAAATGTGTTT
AGATGCAATCAACAGTAAGGAAGATGGGAAGCCAGGCATCTTCAAATGTC
ATGATACTGGAGATAAACAGGTATTCTTCCAGTCTACGTTGATGTTTTTT
CTCAAGATATAtgatttctttatttaaaaaaattatttttcaggcCTTGA
AACAACTAAGATATTCAtggtatgcaccattgcaatgtcttctgacatta
cattacggacccaacagctgattggttgtaagtgacgtaaaatcagtcaa
tacgtcattttcaaccaatcagttgtTGCGTCCGTGgaaaacattgcaat
ggtgctACATATCATGGATAGAGCTGAATTGTTTACATTCTTTGGAGATT
AATTCATTACATCAAGATCTATTTTTTACGTTAtaccttttgtttttatt
aacaaaatgaattaaataaaaatcaatttactGACATGGTTTCTAAATGA
TACCAAGAAAGAGTGCACTTTTTTGTTACATGTGAAAACCGTGTCAAGGT
GATTGTACTAAATCCCTTGGGAGTGGTTTCTACATGGAAGCAAGAGTGAG
TACAGTTTTTTTTgagtagttttttttttgctcttcTGCAGTTACCTAAA
GTTGACTAAAGTCCTAACTTAGTTCTTGAAGGAATAATTTATGTCTATTT
GTTGACTCTTAGTTTTGGTTTATCATGAAAGATTCAAATGGGTTGCGGAA
CAAACGCTTGTGTGTAGAAGGGCCGAAAGATTTGGGAAAACCAGGAGAAG
TGAAACTGCAGAATTGTGATGCTGGAGTAGAAAATcaagtatttattttt
aatttagaaTATCTTCATCTCAAAGAAACATCTAAAAATACATTACTTAA
AGTTTCATGTTTGTAGCACAATCGTCAGTTTAAAGAACTATCCGTATTCG
TTAGAAAAgccaaatatttatttttctcttgccCCTTTTGATGTTACAAC
TTCATAAATTATCTTTATTCTATTTTGAAGAGAAACATGAGAGCCATCAG
ATGTGtaacaaaaaagttacaaaagaATTAAGTGCTTCTTGTTTTCCGTG
CCTTTTCTGGggccgaaaaaaaatctcttggGTAGTTCGTGGATCCAAAA
AAGTCGTGGGTGTGCAGGTTCTTGTTTAAGCATCTATAACGTCGGAACAT
CGGGTGTTTCCAGTTGTTcatacaaactgatattatcttttaaaaattat
cGTGTAATCATAttataacacccatattactgtattgcacgtacacgttt
ttttttataagaacaaactatataagaacataaggcttcgaggcccaaaa
acttaagaacattctaagaacatactaaggctttggagacttaaaaacat
tcAACTTCTTaagaaatcaattcaaaatgctcaaaaaatgctgaaaataa
gaatattttaagaacatttttaggcttcaaatccaaaatactaagaacat
ctgaaggcttcgaaaatttttgacgttcttataaaaaaaaaacgtgtatt
aaaaACAATTCCATGCTAATAAAATTAGTGAATTATTTATACGCTAGAAA
TCTATCTACGGTCAATGTGCATTGACTCAAATTAGAATCTTTGAAAGTcc
cttttataagaataatttatcttatttttcaGGCTTGGGTGTATGAGAGT
GAGAACTTGAAATTATCTGGTGGTGAATTATGTTTGGAATCGagcttgaa
aactaaaaaagtcAGAGTTGAGGTTTGTGACagtgaaaagaaaaatcaaa
aatggcaGTTGAAAAAACTGGAAGGTATTTAATAAAGGATTGTAACTTCT
TGGAAAACATTGTTTGAGAAGTGTTACTTACAATCTTTGAGatgggctgg
agtttttacaagagacttcactaattggttatttgaagtaatagagatga
cgcgttctttagaaaaagtaacaaaattgttttattacaggttaacgacc
aaccaaatcaaacgagagcttgtaaaaactccagcttgtccccaaTCTTT
GGATCTTAAATCTGAAACAAAAATCTAATATTGattccaagaagtttttt
ttatctttgaatcAGATAATTATATGTCTAAGTTATTTATTTATATACAA
AGGCACTAATGTGTTTGTTTGTGTTATCCGTAGATGCTATATATTTTTGT
ACTATGGTCAAGAAgacttttatattttatataataTTAGGTTGAGTAAA
TGTTTGTTTTCTAACTGAAATGGCTTTGATGGCTCGCAACGAAATTCTgc
ccccagctggcacacaacgttgtttcaacgctcatctaacgttatatgga
cgttgtgaacattagataaacgttgaaataacgttgtgtgccagctgcaT
ATGGCCAACAAAAACAATCTACCGATTCTGtagattatattttttattct
gctgagaaactttttgattttttcgaagcTATATGCAATCgtctaattca
tgatatgcaccactgcaatgacctcacgaaattatgcaactttctgtttt
tgttccacccaaaacgtcactttttctattgtttaagtgacgtatttgGT
GGATAATTTcgaaagttctcagaagactctccagtggtgcatatcatgaa
tactaatGAAGTATAATGGAAGGTTAGTTGAGCGGATCTCCTACGAAGGA
TTTGCTGCAACCTGTTTCCTACCTAAGTTACGCGGCACGTCTTGCTTTGA
AACAAATGCTATAGTGAAAATGATACTTTCTGCTGGGTTTTGAAAAACGT
AGGCGCACGTCTGAAAAGTTGTGAAACCTTTAGGCATTTCTTGTCAGGAA
AAAGTTGAAGGTTCACTTCTAGCCATTTGGTTTATAATTCATTGTATAAT
GCcgaattattttgttttcgaTATTTTCTCCTACTgttttcaatatcatt
tttggacctaccccggtggggtggaggtcctataaattaacctgtgttcg
ttcgttcgttcgttcgttcgtctgttaccaacttttctcaggattgaatc
ataggaatcttttgatttttggtccAAAGGTGCGAaacggtggtggccaa
aatgtgacggagcccgattttcgaaaaaaaaattttgggggcaaatttgg
gccaaaaaacggctaaaaaacgggttttttggactttgtgaaaaattgga
tcattaattttttctgattttttgcatgaaagtagggtaccatcataggt
aaaagatggctcaattagatttttgcaaaaaaatttatttggcttaaaaa
acgcatgtttatctataagaatcactattaataagcatatatcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032337XLOC_032337Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051005-exon-scaffold_192-1491911889:16093..16603TCONS_00051005-exon-scaffold_192-1491911889:16093..16603Clytia hemisphaericaexon
TCONS_00051005-exon-scaffold_192-1510915933:16093..16603TCONS_00051005-exon-scaffold_192-1510915933:16093..16603Clytia hemisphaericaexon
TCONS_00051005-exon-scaffold_192-1575043694:16093..16603TCONS_00051005-exon-scaffold_192-1575043694:16093..16603Clytia hemisphaericaexon
TCONS_00051005-exon-scaffold_192-1491911889:17116..17208TCONS_00051005-exon-scaffold_192-1491911889:17116..17208Clytia hemisphaericaexon
TCONS_00051005-exon-scaffold_192-1510915933:17116..17208TCONS_00051005-exon-scaffold_192-1510915933:17116..17208Clytia hemisphaericaexon
TCONS_00051005-exon-scaffold_192-1575043694:17116..17208TCONS_00051005-exon-scaffold_192-1575043694:17116..17208Clytia hemisphaericaexon
TCONS_00051005-exon-scaffold_192-1491911889:17416..17512TCONS_00051005-exon-scaffold_192-1491911889:17416..17512Clytia hemisphaericaexon
TCONS_00051005-exon-scaffold_192-1510915933:17416..17512TCONS_00051005-exon-scaffold_192-1510915933:17416..17512Clytia hemisphaericaexon
TCONS_00051005-exon-scaffold_192-1575043694:17416..17512TCONS_00051005-exon-scaffold_192-1575043694:17416..17512Clytia hemisphaericaexon
TCONS_00051005-exon-scaffold_192-1491911889:18105..18230TCONS_00051005-exon-scaffold_192-1491911889:18105..18230Clytia hemisphaericaexon
TCONS_00051005-exon-scaffold_192-1510915933:18105..18230TCONS_00051005-exon-scaffold_192-1510915933:18105..18230Clytia hemisphaericaexon
TCONS_00051005-exon-scaffold_192-1575043694:18105..18230TCONS_00051005-exon-scaffold_192-1575043694:18105..18230Clytia hemisphaericaexon
TCONS_00051005-exon-scaffold_192-1491911889:19075..20737TCONS_00051005-exon-scaffold_192-1491911889:19075..20737Clytia hemisphaericaexon
TCONS_00051005-exon-scaffold_192-1510915933:19075..20737TCONS_00051005-exon-scaffold_192-1510915933:19075..20737Clytia hemisphaericaexon
TCONS_00051005-exon-scaffold_192-1575043694:19075..20737TCONS_00051005-exon-scaffold_192-1575043694:19075..20737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_192supercontigscaffold_192:16093..20737 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.877785	1.11517	1.70333	2.33097	7.47894	5.61163	5.93677	6.45773	3.76762	3.22641	2.76321	3.65097	4.32727	4.18467	2.97752	3.14181	4.83573	4.40624	5.29317	5.18476	8.07087	8.07561	4.18148	4.9687	5.2591	6.49039	9.80352	7.84466	13.0209	10.2919
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top