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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051007 ID=TCONS_00051007|Name=TCONS_00051007|organism=Clytia hemisphaerica|type=transcript|length=3092bp
CACCAGAATAAATTCAGTAGCCGAACTAGACAGTATTCCAATCAAGTAAC
CAACATCATATTATAGCTTAAAATCTGGAGAATTGTAAGGTGCTGGCTAG
TAACATCTTATTAATATCTCTTCTTTTTACATGTCAGAATGCtgacaaaa
aaaggcactttcttgcaaaaatatttacaaaatattgaaatataataatc
GTAAGTAAAATTCCTCCAAAAAGATTTAGTATATGAAGGTGATGCTCATT
GAATTGATATTAGGAAGAAGTCTTTGATTCTCTCAAAAACGTCTCTTAAA
AGCAAATTGGTGCACCGATTGGGGTACcatgctttttaaaataaccTGTT
TGCTATTGTTTTatagatatttgaaaaaagtaactATCCTATATTATAAT
GGTGTTGCAAGCAATTTTGCGaaatcgaattttttttgtagCACTTCTGG
TTTTACTATGGGTTTTGATTTACATGATGCCAACGTTGATGCAAGGATAC
AAAGAGGAGAGAGTGGACTTGCACAGACATGGAAGAACGTTAAATAAAAA
GCCTGTTGTTGAATTGAGGAAGGAAGAAATACCAGTCAATCATCTACAAG
CAGGTTGGTTTCACCAAGGGGAAATGTGTTTAGATGCAATCAACAGTAAG
GAAGATGGGAAGCCAGGCATCTTCAAATGTCATGATACTGGAGATAAACA
GTTTTGGTTTATCATGAAAGATTCAAATGGGTTGCGGAACAAACGCTTGT
GTGTAGAAGGGCCGAAAGATTTGGGAAAACCAGGAGAAGTGAAACTGCAG
AATTGTGATGCTGGAGTAGAAAATcaaGCTTGGGTGTATGAGAGTGAGAA
CTTGAAATTATCTGGTGGTGAATTATGTTTGGAATCGagcttgaaaacta
aaaaagtcAGAGTTGAGGTTTGTGACagtgaaaagaaaaatcaaaaatgg
caGTTGAAAAAACTGGAAGaaacaaagatataaaaccTATGAATTAGAGG
TCGGAAATCATGGCAGATTTTCCGGAAATTGAGGATTTGATAGAAGAATT
AACAACAACCGGTAAAGAGGAACTAGACCGAGACCATTTGAAGAAATTGT
TGAACTTATGTCGGAAATCTCATCCCAACCTGGAATTTTCTTACACTAAG
CTATATGAGCAATTGCAGGAAGAACATTCTGAGATCCGTTTTTCTGCATT
TCAAATCATGgataaattgtttttaagatcGCATCGGTTCCGTGAACTCT
TACTACAGGACGCACCTGATATTTTGGTTGTTGCTATGGGAACAGATCAG
CATGATCGACCGTTACCACCACCTTTGAAGGTTGCTAAGCAACTACAAAA
GATGGCTTTAGAGAAGTTAAACACATGGTATGAACGATTTGGTAAAGGTT
ACCGGTTACTGGAACTCGCTTTTGAGTTTGTAAGAGATGTGAAGAAagta
aaatttgatgaaatgcAGGTACGGACAGCGGCTGAGGTAAGAAACACTCA
ACAGGCTAAATTGAAAGAAGTGAGGTTAACAGCTTCAAAGCTAGAACAAG
TAGATATACAATATGAAGATCGTAAAGAGAGTTTTCTCTCAGATATCAAA
CAAATGAAAAGCTGCTTTGAAATGCTGGTGCAAAAATTATCGAACCAGCA
CACAGATACGGGAGACAGCGAAACGATCCATGATCCGGGATTCCTTGAGG
GCAATGAATCTGGCATTACGTCATATAATTTTACGTTGTCTTTGTCGATT
TCTCAAAAGCATGTTATTTACGAAACACCGGATAACGAGGATGCTATACG
AAGGTTACGCGAACTTTATAAGGAGAATCGGGGTCATGAAAATGAGGCTA
AGCGCTGGTTAAACGTATTATTAAAATGCGGGTCAACAGATAAATGGAAG
ATTGAAGAGATTTTGAGATTGAAGAACACTTTAAGTGGGTTGTGTAGTCA
ATTTTTGGATCTGGAGATTCGGGAAGATGGTTATTTCAGTTCTGATGATG
ATGGAGGAGAAATGTTTGTGGAAGTACCGGAAAAAATGATGAAGACTTAT
GTTTATTCAGATATTGATGTTGAGGAAAGACCAACTTGCAGTCGATATCT
AGAGCCAGACGTAGAAGAAAATATGAAACATGAAGACAAAAGTGAAGCCT
CACACCACTCAAGTGTACGTGAAAAACACTTGGCTATTGCACCTGTTGTG
CCGTTCGATTCCGATTTGAAGTTATGGGAAACCGAATCGGGGAACATTGA
CATAAGCTCATACAAATCGGATTCGTTACATCGCTTTTGGAAAACAAACG
AACATCAAGAAAATTTTGTGCCGTCAGAAGTCGAAGCTAGtatgagagaa
agagcttttcGTATGGAAACCAAATTTGAACCAGTTGAGCGGAAATGCGG
CGCTCAATTACCGCAGGGCGGTGTTTGTCAGCGTATGGATCGATACAAGT
GTCCGTTTCACGGAAAGATAGTTGAACGTGACTCCGTAGGGCGAGCTCTT
CATCCTGAAGACATTGAACGGGATAAACAATTAGATGTGcaacgaaaaga
aaaagaatgtcttcaaattcaaaaggaTATCGAGGCAACTACTGGTGTTT
CACTTATCAAGAAAAAGAGACCACGAGTAAGCAAGGCACAAACacgaaaa
gatattcaaaagaaACGATATGCTCGCTTAACCAACATCAAGAAAACTGG
TGACAATGAAGTTACCTCGAAANAAAGAGACCACGAGTAAGCAAGGCACA
AACacgaaaagatattcaaaagaaACGATATGCTCGCTTAACCAACATCA
AGAAAACTGGTGACAATGAGGTTACCTCGAAGAAAGGATTGAAAAATAAA
GTGTTTAGTGCACGGAGCTTAGATAAAATTTCACATGCTAAGAACCAATC
ATCTCAACGAAAGCATCAGGAACGATTTGGGTCAAAttttaattattgaa
taatTTGGTTTGTTATTACTGTTGATCAGATGAAAGTTATTTTGAACCAA
GATTTGTCTTGTGCTACCTTAAAGTTGGGTGTAAAGAGCTGTCGTAAATA
ATTTGCGATGGATAAATTTCTTGTCGCAAACTCTTTGTCCCA Run BLAST on NCBI protein sequence of TCONS_00051007-protein >TCONS_00051007-protein ID=TCONS_00051007-protein|Name=TCONS_00051007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=576bp
MADFPEIEDLIEELTTTGKEELDRDHLKKLLNLCRKSHPNLEFSYTKLYE
QLQEEHSEIRFSAFQIMDKLFLRSHRFRELLLQDAPDILVVAMGTDQHDR
PLPPPLKVAKQLQKMALEKLNTWYERFGKGYRLLELAFEFVRDVKKVKFD
EMQVRTAAEVRNTQQAKLKEVRLTASKLEQVDIQYEDRKESFLSDIKQMK
SCFEMLVQKLSNQHTDTGDSETIHDPGFLEGNESGITSYNFTLSLSISQK
HVIYETPDNEDAIRRLRELYKENRGHENEAKRWLNVLLKCGSTDKWKIEE
ILRLKNTLSGLCSQFLDLEIREDGYFSSDDDGGEMFVEVPEKMMKTYVYS
DIDVEERPTCSRYLEPDVEENMKHEDKSEASHHSSVREKHLAIAPVVPFD
SDLKLWETESGNIDISSYKSDSLHRFWKTNEHQENFVPSEVEASMRERAF
RMETKFEPVERKCGAQLPQGGVCQRMDRYKCPFHGKIVERDSVGRALHPE
DIERDKQLDVQRKEKECLQIQKDIEATTGVSLIKKKRPRVSKAQTRKDIQ
KKRYARLTNIKKTGDNEVTSKXRDHE Run BLAST on NCBI transcript from alignment at scaffold_192:16093..26666+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051007 ID=TCONS_00051007|Name=TCONS_00051007|organism=Clytia hemisphaerica|type=transcript|length=10574bp|location=Sequence derived from alignment at scaffold_192:16093..26666+ (Clytia hemisphaerica)
CACCAGAATAAATTCAGTAGCCGAACTAGACAGTATTCCAATCAAGTAAC
CAACATCATATTATAGCTTAAAATCTGGAGAATTGTAAGGTGCTGGCTAG
TAACATCTTATTAATATCTCTTCTTTTTACATGTCAGAATGCtgacaaaa
aaaggcactttcttgcaaaaatatttacaaaatattgaaatataataatc
GTAAGTAAAATTCCTCCAAAAAGATTTAGTATATGAAGGTGATGCTCATT
GAATTGATATTAGGAAGAAGTCTTTGATTCTCTCAAAAACGTCTCTTAAA
AGCAAATTGGTGCACCGATTGGGGTACcatgctttttaaaataaccTGTT
TGCTATTGTTTTatagatatttgaaaaaagtaactATCCTATATTATAAT
GGTGTTGCAAGCAATTTTGCGaaatcgaattttttttgtagCACTTCTGG
TTTTACTATGGGTTTTGATTTACATGATGCCAACGTTGATGCAAGGATAC
AAAGAGGAGAGGTTGGTTATCATTCAAGAATGTTTTATTAAAGCTTGTAA
CTCTTGTTCTTTTTATACGTAATTTAATTACAATCACATTTTATGGATTT
GTGATAGATTTCTACATAGTACATTGTTATTTTGTTCATAAGATGAAATA
TTACGATTTCAATTTTAATGGGCTACTCCacaaatagtctgtacccccca
TTTTGaagaggtgtgacgtccagggtggcctggaaaataaaaaaaatcca
gggtggtcactAAAATTGGGTTAAAAAaccagggtggtcagtataacgag
gtcgaaaatGTGGTcccaaagaaatggaagaaaaaaatccaaggtcctga
aaaattggaaaataatcTAGGGGACTcaccttaaaaaaaaaagatctcct
caacatagggagtacagattttttctggaatagcccaatttgTAGGTTTG
AATTTTATGATAGTAAACACTTAATGAAAGGATCTAGGATGAACTAGACA
TCGGTACTATGATATGACTTTAGAGTGGACTTGCACAGACATGGAAGAAC
GTTAAATAAAAAGCCTGTTGTTGAATTGAGGAAGGAAGAAATACCAGTCA
ATCATCTACAAGCAGGGTTTGTTGGAATTCTATTCTAAAAAACTATCGAA
TTATCATGCCCTTTTTAATTGCTGTATTTTTAGGATTTAAGGTTGTATCT
TTTAGAATCATTATACAGTATAATATCACATTGTATCCAATCTTAGatac
aaattaaaaagaaagtccTTCTGAGccacttgatttttttaattgcaaTC
CATTTCCCCTATCGTTTCTATAGTTGGTTTCACCAAGGGGAAATGTGTTT
AGATGCAATCAACAGTAAGGAAGATGGGAAGCCAGGCATCTTCAAATGTC
ATGATACTGGAGATAAACAGGTATTCTTCCAGTCTACGTTGATGTTTTTT
CTCAAGATATAtgatttctttatttaaaaaaattatttttcaggcCTTGA
AACAACTAAGATATTCAtggtatgcaccattgcaatgtcttctgacatta
cattacggacccaacagctgattggttgtaagtgacgtaaaatcagtcaa
tacgtcattttcaaccaatcagttgtTGCGTCCGTGgaaaacattgcaat
ggtgctACATATCATGGATAGAGCTGAATTGTTTACATTCTTTGGAGATT
AATTCATTACATCAAGATCTATTTTTTACGTTAtaccttttgtttttatt
aacaaaatgaattaaataaaaatcaatttactGACATGGTTTCTAAATGA
TACCAAGAAAGAGTGCACTTTTTTGTTACATGTGAAAACCGTGTCAAGGT
GATTGTACTAAATCCCTTGGGAGTGGTTTCTACATGGAAGCAAGAGTGAG
TACAGTTTTTTTTgagtagttttttttttgctcttcTGCAGTTACCTAAA
GTTGACTAAAGTCCTAACTTAGTTCTTGAAGGAATAATTTATGTCTATTT
GTTGACTCTTAGTTTTGGTTTATCATGAAAGATTCAAATGGGTTGCGGAA
CAAACGCTTGTGTGTAGAAGGGCCGAAAGATTTGGGAAAACCAGGAGAAG
TGAAACTGCAGAATTGTGATGCTGGAGTAGAAAATcaagtatttattttt
aatttagaaTATCTTCATCTCAAAGAAACATCTAAAAATACATTACTTAA
AGTTTCATGTTTGTAGCACAATCGTCAGTTTAAAGAACTATCCGTATTCG
TTAGAAAAgccaaatatttatttttctcttgccCCTTTTGATGTTACAAC
TTCATAAATTATCTTTATTCTATTTTGAAGAGAAACATGAGAGCCATCAG
ATGTGtaacaaaaaagttacaaaagaATTAAGTGCTTCTTGTTTTCCGTG
CCTTTTCTGGggccgaaaaaaaatctcttggGTAGTTCGTGGATCCAAAA
AAGTCGTGGGTGTGCAGGTTCTTGTTTAAGCATCTATAACGTCGGAACAT
CGGGTGTTTCCAGTTGTTcatacaaactgatattatcttttaaaaattat
cGTGTAATCATAttataacacccatattactgtattgcacgtacacgttt
ttttttataagaacaaactatataagaacataaggcttcgaggcccaaaa
acttaagaacattctaagaacatactaaggctttggagacttaaaaacat
tcAACTTCTTaagaaatcaattcaaaatgctcaaaaaatgctgaaaataa
gaatattttaagaacatttttaggcttcaaatccaaaatactaagaacat
ctgaaggcttcgaaaatttttgacgttcttataaaaaaaaaacgtgtatt
aaaaACAATTCCATGCTAATAAAATTAGTGAATTATTTATACGCTAGAAA
TCTATCTACGGTCAATGTGCATTGACTCAAATTAGAATCTTTGAAAGTcc
cttttataagaataatttatcttatttttcaGGCTTGGGTGTATGAGAGT
GAGAACTTGAAATTATCTGGTGGTGAATTATGTTTGGAATCGagcttgaa
aactaaaaaagtcAGAGTTGAGGTTTGTGACagtgaaaagaaaaatcaaa
aatggcaGTTGAAAAAACTGGAAGGTATTTAATAAAGGATTGTAACTTCT
TGGAAAACATTGTTTGAGAAGTGTTACTTACAATCTTTGAGatgggctgg
agtttttacaagagacttcactaattggttatttgaagtaatagagatga
cgcgttctttagaaaaagtaacaaaattgttttattacaggttaacgacc
aaccaaatcaaacgagagcttgtaaaaactccagcttgtccccaaTCTTT
GGATCTTAAATCTGAAACAAAAATCTAATATTGattccaagaagtttttt
ttatctttgaatcAGATAATTATATGTCTAAGTTATTTATTTATATACAA
AGGCACTAATGTGTTTGTTTGTGTTATCCGTAGATGCTATATATTTTTGT
ACTATGGTCAAGAAgacttttatattttatataataTTAGGTTGAGTAAA
TGTTTGTTTTCTAACTGAAATGGCTTTGATGGCTCGCAACGAAATTCTgc
ccccagctggcacacaacgttgtttcaacgctcatctaacgttatatgga
cgttgtgaacattagataaacgttgaaataacgttgtgtgccagctgcaT
ATGGCCAACAAAAACAATCTACCGATTCTGtagattatattttttattct
gctgagaaactttttgattttttcgaagcTATATGCAATCgtctaattca
tgatatgcaccactgcaatgacctcacgaaattatgcaactttctgtttt
tgttccacccaaaacgtcactttttctattgtttaagtgacgtatttgGT
GGATAATTTcgaaagttctcagaagactctccagtggtgcatatcatgaa
tactaatGAAGTATAATGGAAGGTTAGTTGAGCGGATCTCCTACGAAGGA
TTTGCTGCAACCTGTTTCCTACCTAAGTTACGCGGCACGTCTTGCTTTGA
AACAAATGCTATAGTGAAAATGATACTTTCTGCTGGGTTTTGAAAAACGT
AGGCGCACGTCTGAAAAGTTGTGAAACCTTTAGGCATTTCTTGTCAGGAA
AAAGTTGAAGGTTCACTTCTAGCCATTTGGTTTATAATTCATTGTATAAT
GCcgaattattttgttttcgaTATTTTCTCCTACTgttttcaatatcatt
tttggacctaccccggtggggtggaggtcctataaattaacctgtgttcg
ttcgttcgttcgttcgttcgtctgttaccaacttttctcaggattgaatc
ataggaatcttttgatttttggtccAAAGGTGCGAaacggtggtggccaa
aatgtgacggagcccgattttcgaaaaaaaaattttgggggcaaatttgg
gccaaaaaacggctaaaaaacgggttttttggactttgtgaaaaattgga
tcattaattttttctgattttttgcatgaaagtagggtaccatcataggt
aaaagatggctcaattagatttttgcaaaaaaatttatttggcttaaaaa
acgcatgtttatctataagaatcactattaataagcatatatcaatcttc
ttagtcaaattactcaatttctttatgagatagatgtttttttgctcata
agggcttacttttgaagaatatgtgtgtttagacatgaaattttggttgc
ttggcgtgtttttatagaaaaactggccaagttcaatatttttttataag
cacgttatcaattacttaggtattagcttttctcgagattggctctttca
ttctttaagacattttgcacaaagatgcataactataaacccttgaatgt
gacggagcccaatttttgaagaaaaaaaaatgttttggggcaaatttggg
ccaaaaaacggctaaaaagcgggttttttggactttgtgaaaaattggat
tattaatttttgctgattttttgcatggaagtagggtaccatcataggta
aaagatggctcagggagatttttgcaaaaaaaatttgttggctcaaaaaa
cgcatgtttatctataagaatcactattaataagaatacattaatgttct
tagtcaaattactaaatttttttatgagatagatgttttttttgctcacg
agggcttaattttgaagcatatgtgtgtttagacatgaaattttggttgc
ttggcgtatttttaaagaaaaactgcccaaatttgatatttttttataag
cacactatcaattacttaggtattagcttttctcgagattggctctttca
ttctttatgatttttttgcacaaagatgcattNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNaaccctcgaatgtgacggagcccgattttcgaaaaaaaatgtttttg
ggcaaatttgggccaaaaaacggctaaaaaagggttttttggacattgtg
aaatattgcatcgttgtttttttctgattttttgcatgaaagtaggtaaa
agatgggtcaagcagatttttgtaaataaacttttcagctctaaaaacgc
atctttatctataagaatcactattaataagcatacatcaatgttcttag
ccaaattactcaattttttgatgagatagatgtctttttatgctcacgaa
gtcttgaatatgaaagaataatttcaagagtatgaaattttggtttctaa
acgttttttttataagaaacaaacgactaattttaataaatcttcactat
ttgtgttttgaatgattgtttaacgttcatgctcacgtagatatcaatta
tatatgtgttaaatgcataaccaggtaggtccataaaagtatcacttgtt
ttatttTACCTAGTCGATTTCATATAAAGCctaattttgaataattattc
AAATTCATAATATTAGTTGATTTCAGTTATAGAGATTTTAATTTTGAGAA
GGTTTTTTTActataatatttttataatgtgacaaatcaaaagaaattta
tttaCAATTTATTACAATTATAAATGTATATACCTaattaaaaatagttt
ttttacaaaattatgCTATATTATATTAGATTTATGAAATTCGAAACGTT
TCATTACTTTAGAACCAAATTTAGATGTCAAGATAATTTATCTTGACTAA
AATTCAAACTGAAATCGGTGAATACTTTAAAAGAGTCTTTGATTTTAGTA
TTAATTTTAACTTTCATAATCAGTTTGCTTGGCGAGGTCCTATTTTTCGA
TTTATGTTCTTACCATTTCTGGCTCTTTTTCCAACCTCAGCTTTTCTACT
TCAAACTTTCCCACCGGTTATTGATGTAaacgttttcttttataagaaca
tccaaaattgttGAAGCCTTCGTATGTTCTTAAATATTTTAGTTTTAAcc
ctaaaaattttctgaacATGTTCTAAATTTggccattttgtgaatatttt
agtccattttcctaagaaattgggtgttttagggtccgcaaagtcttaaa
ttgttcttaacttgctcttaaaattttggcaatcgaagccttatgttctt
atatagtttgctcttataaaaaaatgacgaAGAGTCATTTCAAGCTAACA
AATATCTATCTTTTCATTCTagaaacaaagatataaaaccTATGAATTAG
AGGTCGGAAATCATGGCAGATTTTCCGGAAATTGAGGATTTGATAGAAGA
ATTAACAACAACCGGTAAAGAGGAACTAGACCGAGACCATTTGAAGAAAT
TGTTGAACTTATGTCGGAAATCTCATCCCAACCTGGAATTTTCTTACACT
AAGCTATATGAGCAATTGCAGGAAGAACATTCTGAGATCCGTTTTTCTGC
ATTTCAAATCATGgataaattgtttttaagatcGCATCGGTTCCGTGAAC
TCTTACTACAGGACGCACCTGATATTTTGGTTGTTGCTATGGGAACAGAT
CAGCATGATCGACCGTTACCACCACCTTTGAAGGTTGCTAAGCAACTACA
AAAGATGGCTTTAGAGAAGTTAAACACATGGTATGAACGATTTGGTAAAG
GTTACCGGTTACTGGAACTCGCTTTTGAGTTTGTAAGAGATGTGAAGAAa
gtaaaatttgatgaaatgcAGGTACGGACAGCGGCTGAGGTAAGAAACAC
TCAACAGGCTAAATTGAAAGAAGTGAGGTTAACAGCTTCAAAGCTAGAAC
AAGTAGATATACAATATGAAGATCGTAAAGAGAGTTTTCTCTCAGATATC
AAACAAATGAAAAGCTGCTTTGAAATGCTGGTGCAAAAATTATCGAACCA
GCACACAGATACGGGAGACAGCGAAACGATCCATGATCCGGGATTCCTTG
AGGGCAATGAATCTGGCATTACGTCATATAATTTTACGTTGTCTTTGTCG
ATTTCTCAAAAGCATGTTATTTACGAAACACCGGATAACGAGGATGCTAT
ACGAAGGTTACGCGAACTTTATAAGGAGAATCGGGGTCATGAAAATGAGG
CTAAGCGCTGGTTAAACGTATTATTAAAATGCGGGTCAACAGATAAATGG
AAGATTGAAGAGATTTTGAGATTGAAGAACACTTTAAGTGGGTTGTGTAG
TCAATTTTTGGATCTGGAGATTCGGGAAGATGGTTATTTCAGTTCTGATG
ATGATGGAGGAGAAATGTTTGTGGAAGTACCGGAAAAAATGATGAAGACT
TATGTTTATTCAGATATTGATGTTGAGGAAAGACCAACTTGCAGTCGATG
TGAGTactttcaataaattttattgTATACTGTAGCTAGAAAGTCTCAAC
CTGAAAAGTGTGTATGGTTTGGGTTATGTTTCTAGACTCTCCAAAGTTCC
TTAGCAGCGACAAGCAATAGTACTTTAAAAGATCCAGGTTATTCTATAAT
CAGAAGGTTCTCattgaatttcttttaattAATCAATGTCATCAAATTAA
AATagtatcaaattaaaaattttattttcaggcgaaaattaaaaaaatgt
agtgtttccggaaaccggccgagtgaaaataaagatttttctgacccggc
cgctgACTATGGGTTTATCTAcatggttcatcataaagaaaatcaaattg
aCCGTTCAatctatcaaacgtcgtttggttagatattcccacttgtaaat
caagtttcgttcgttagtagttgatacattagtattcagggcttagttca
tactgtttgtacataaaagtttaaaatcttctatttcaatgatcttaagt
tatcaaaaatagcacaaaaagaattttccggcCCGCCGCaagagagcttt
tttccttcacccgcattccggaaacacaacatttttttattttcgcctta
ggATAAATGAATGCTATACTATCTGTTTTCAGATCTAGAGCCAGACGTAG
AAGAAAATATGAAACATGAAGACAAAAGTGAAGCCTCACACCACTCAAGT
GTACGTGAAAAACACTTGGCTATTGCACCTGTTGTGCCGTTCGATTCCGA
TTTGAAGTTATGGGAAACCGAATCGGGGAACATTGACATAAGCTCATACA
AATCGGATTCGTTACATCGCTTTTGGAAAACAAACGAACATCAAGAAAAT
TTTGTGCCGTCAGAAGTCGAAGCTAGtatgagagaaagagcttttcGTAT
GGAAACCAAATTTGAACCAGTTGAGCGGAAATGCGGCGCTCAATTACCGC
AGGGCGGTGTTTGTCAGCGTATGGATCGATACAAGTGTCCGTTTCACGGA
AAGATAGTTGAACGTGACTCCGTAGGGCGAGCTCTTCATCCTGAAGACAT
TGAACGGGTATGAGATGTGATTCCAGTAATACACTTGGTTTATACTAGAC
ATCACGGCTCTTGTTTTCTACGTAGTAACCACAGCAAAAGATGAGCAGAT
CACCCGGTTGGGAAAAGAGCATTTCACTCCTTGGAACTTACAAGAAAGTC
CCACAATCATTCGCACCAAGATGTGAAATTATTTTTCCCATTCAAATGAT
TTGTTCAATTTTTCCTGcgaacgtctattccactttgcgactttttcgaa
tatctatagcccaggttttcgggtgTAATTCAAAGTGTAACTCACACCAA
GAAGCGGAATGAAAGTTGTCTGTGTGTCAGCCCAATGAAACCAGCCATTG
ACGTCATTCAACTCTAGTTTACTTAAACCCAGCTTCCTTCACTTACCTTT
TGGTGCAAGGGTTGGGTCATTCCATATATTATATCCATACGATGGAGTGG
GACGCACATGGGGGATGTAAATgcgtaaagaattatttttaaattttcca
ggTGGTAAAAGACTGATGTTAgctcgtccaccctcacttttaaaatatga
aaataatttttctttccaagGGGTATCAACACATTTTcaagaaatgtttt
tgattttaaaaggttcgtccacgccctgtattaccgagtttatatattgg
aggatatcgagggcgacggtaagtgaaatgatacaaaacaaagtcgatag
ttgatgtacggctctatattgcctttgctcacctaaacagacgacggtat
tttagtgtttttaccatcgtcgagcaaagtggacggtgattttggagaca
ggtcaactttgctttataccgtcctctagtctgaatcgcagacctctaca
aaaccccaggtagtatatcTATAAgaagcacgaatccgttagtggatgcc
agcagcctaaccGTCCTCTCGATTTATCTCGAgcacataaactcgctatt
aaaatttgatgaaatggCCCATTGAAGCCAAGTTTCTCCTATAAGATGAT
CGGTTTTCGGTGATATTCGTCTGTTACAGACCGTAAGATCCAAATCACAA
ACGATAGCGGGCTACAGATATGAGCTTTCCTTCCTATCTCTTTTTTTCTG
TAGGATAAACAATTAGATGTGcaacgaaaagaaaaagaatgtcttcaaat
tcaaaaggaTATCGAGGCAACTACTGGTGTTTCACTTATCAAGAAAAAGA
GACCACGAGTAAGCAAGGCACAAACacgaaaagatattcaaaagaaACGA
TATGCTCGCTTAACCAACATCAAGAAAACTGGTGACAATGAAGTTACCTC
GAAANAAAGAGACCACGAGTAAGCAAGGCACAAACacgaaaagatattca
aaagaaACGATATGCTCGCTTAACCAACATCAAGAAAACTGGTGACAATG
AGGTTACCTCGAAGAAAGGATTGAAAAATAAAGTGTTTAGTGCACGGAGC
TTAGATAAAATTTCACATGCTAAGAACCAATCATCTCAACGAAAGCATCA
GGAACGATTTGGGTCAAAttttaattattgaataatTTGGTTTGTTATTA
CTGTTGATCAGATGAAAGTTATTTTGAACCAAGATTTGTCTTGTGCTACC
TTAAAGTTGGGTGTAAAGAGCTGTCGTAAATAATTTGCGATGGATAAATT
TCTTGTCGCAAACTCTTTGTCCCA Coding sequence (CDS) from alignment at scaffold_192:16093..26666+ >TCONS_00051007 ID=TCONS_00051007|Name=TCONS_00051007|organism=Clytia hemisphaerica|type=CDS|length=5193bp|location=Sequence derived from alignment at scaffold_192:16093..26666+ (Clytia hemisphaerica)
ATGGCAGATTTTCCGGAAATTGAGGATTTGATAGAAGAATTAACAACAAC
CGGTAAAGAGGAACTAGACCGAGACCATTTGAAGAAATTGTTGAACTTAT
GTCGGAAATCTCATCCCAACCTGGAATTTTCTTACACTAAGCTATATGAG
CAATTGCAGGAAGAACATTCTGAGATCCGTTTTTCTGCATTTCAAATCAT
GgataaattgtttttaagatcGCATCGGTTCCGTGAACTCTTACTACAGG
ACGCACCTGATATTTTGGTTGTTGCTATGGGAACAGATCAGCATGATCGA
CCGTTACCACCACCTTTGAAGGTTGCTAAGCAACTACAAAAGATGGCTTT
AGAGAAGTTAAACACATGGTATGAACGATTTGGTAAAGGTTACCGGTTAC
TGGAACTCGCTTTTGAGTTTGTAAGAGATGTGAAGAAagtaaaatttgat
gaaatgcAGGTACGGACAGCGGCTGAGGTAAGAAACACTCAACAGGCTAA
ATTGAAAGAAGTGAGGTTAACAGCTTCAAAGCTAGAACAAGTAGATATAC
AATATGAAGATCGTAAAGAGAGTTTTCTCTCAGATATCAAACAAATGAAA
AGCTGCTTTGAAATGCTGGTGCAAAAATTATCGAACCAGCACACAGATAC
GGGAGACAGCGAAACGATCCATGATCCGGGATTCCTTGAGGGCAATGAAT
CTGGCATTACGTCATATAATTTTACGTTGTCTTTGTCGATTTCTCAAAAG
CATGTTATTTACGAAACACCGGATAACGAGGATGCTATACGAAGGTTACG
CGAACTTTATAAGGAGAATCGGGGTCATGAAAATGAGGCTAAGCGCTGGT
TAAACGTATTATTAAAATGCGGGTCAACAGATAAATGGAAGATTGAAGAG
ATTTTGAGATTGAAGAACACTTTAAGTGGGTTGTGTAGTCAATTTTTGGA
TCTGGAGATTCGGGAAGATGGTTATTTCAGTTCTGATGATGATGGAGGAG
AAATGTTTGTGGAAGTACCGGAAAAAATGATGAAGACTTATGTTTATTCA
GATATTGATGTTGAGGAAAGACCAACTTGCAGTCGATATCTAGAGCCAGA
CGTAGAAGAAAATATGAAACATGAAGACAAAAGTGAAGCCTCACACCACT
CAAGTGTACGTGAAAAACACTTGGCTATTGCACCTGTTGTGCCGTTCGAT
TCCGATTTGAAGTTATGGGAAACCGAATCGGGGAACATTGACATAAGCTC
ATACAAATCGGATTCGTTACATCGCTTTTGGAAAACAAACGAACATCAAG
AAAATTTTGTGCCGTCAGAAGTCGAAGCTAGtatgagagaaagagctttt
cGTATGGAAACCAAATTTGAACCAGTTGAGCGGAAATGCGGCGCTCAATT
ACCGCAGGGCGGTGTTTGTCAGCGTATGGATCGATACAAGTGTCCGTTTC
ACGGAAAGATAGTTGAACGTGACTCCGTAGGGCGAGCTCTTCATCCTGAA
GACATTGAACGGGATAAACAATTAGATGTGcaacgaaaagaaaaagaatg
tcttcaaattcaaaaggaTATCGAGGCAACTACTGGTGTTTCACTTATCA
AGAAAAAGAGACCACGAGTAAGCAAGGCACAAACacgaaaagatattcaa
aagaaACGATATGCTCGCTTAACCAACATCAAGAAAACTGGTGACAATGA
AGTTACCTCGAAANAAAGAGACCACGAGTAAATGGCAGATTTTCCGGAAA
TTGAGGATTTGATAGAAGAATTAACAACAACCGGTAAAGAGGAACTAGAC
CGAGACCATTTGAAGAAATTGTTGAACTTATGTCGGAAATCTCATCCCAA
CCTGGAATTTTCTTACACTAAGCTATATGAGCAATTGCAGGAAGAACATT
CTGAGATCCGTTTTTCTGCATTTCAAATCATGgataaattgtttttaaga
tcGCATCGGTTCCGTGAACTCTTACTACAGGACGCACCTGATATTTTGGT
TGTTGCTATGGGAACAGATCAGCATGATCGACCGTTACCACCACCTTTGA
AGGTTGCTAAGCAACTACAAAAGATGGCTTTAGAGAAGTTAAACACATGG
TATGAACGATTTGGTAAAGGTTACCGGTTACTGGAACTCGCTTTTGAGTT
TGTAAGAGATGTGAAGAAagtaaaatttgatgaaatgcAGGTACGGACAG
CGGCTGAGGTAAGAAACACTCAACAGGCTAAATTGAAAGAAGTGAGGTTA
ACAGCTTCAAAGCTAGAACAAGTAGATATACAATATGAAGATCGTAAAGA
GAGTTTTCTCTCAGATATCAAACAAATGAAAAGCTGCTTTGAAATGCTGG
TGCAAAAATTATCGAACCAGCACACAGATACGGGAGACAGCGAAACGATC
CATGATCCGGGATTCCTTGAGGGCAATGAATCTGGCATTACGTCATATAA
TTTTACGTTGTCTTTGTCGATTTCTCAAAAGCATGTTATTTACGAAACAC
CGGATAACGAGGATGCTATACGAAGGTTACGCGAACTTTATAAGGAGAAT
CGGGGTCATGAAAATGAGGCTAAGCGCTGGTTAAACGTATTATTAAAATG
CGGGTCAACAGATAAATGGAAGATTGAAGAGATTTTGAGATTGAAGAACA
CTTTAAGTGGGTTGTGTAGTCAATTTTTGGATCTGGAGATTCGGGAAGAT
GGTTATTTCAGTTCTGATGATGATGGAGGAGAAATGTTTGTGGAAGTACC
GGAAAAAATGATGAAGACTTATGTTTATTCAGATATTGATGTTGAGGAAA
GACCAACTTGCAGTCGATATCTAGAGCCAGACGTAGAAGAAAATATGAAA
CATGAAGACAAAAGTGAAGCCTCACACCACTCAAGTGTACGTGAAAAACA
CTTGGCTATTGCACCTGTTGTGCCGTTCGATTCCGATTTGAAGTTATGGG
AAACCGAATCGGGGAACATTGACATAAGCTCATACAAATCGGATTCGTTA
CATCGCTTTTGGAAAACAAACGAACATCAAGAAAATTTTGTGCCGTCAGA
AGTCGAAGCTAGtatgagagaaagagcttttcGTATGGAAACCAAATTTG
AACCAGTTGAGCGGAAATGCGGCGCTCAATTACCGCAGGGCGGTGTTTGT
CAGCGTATGGATCGATACAAGTGTCCGTTTCACGGAAAGATAGTTGAACG
TGACTCCGTAGGGCGAGCTCTTCATCCTGAAGACATTGAACGGGATAAAC
AATTAGATGTGcaacgaaaagaaaaagaatgtcttcaaattcaaaaggaT
ATCGAGGCAACTACTGGTGTTTCACTTATCAAGAAAAAGAGACCACGAGT
AAGCAAGGCACAAACacgaaaagatattcaaaagaaACGATATGCTCGCT
TAACCAACATCAAGAAAACTGGTGACAATGAAGTTACCTCGAAANAAAGA
GACCACGAGTAAATGGCAGATTTTCCGGAAATTGAGGATTTGATAGAAGA
ATTAACAACAACCGGTAAAGAGGAACTAGACCGAGACCATTTGAAGAAAT
TGTTGAACTTATGTCGGAAATCTCATCCCAACCTGGAATTTTCTTACACT
AAGCTATATGAGCAATTGCAGGAAGAACATTCTGAGATCCGTTTTTCTGC
ATTTCAAATCATGgataaattgtttttaagatcGCATCGGTTCCGTGAAC
TCTTACTACAGGACGCACCTGATATTTTGGTTGTTGCTATGGGAACAGAT
CAGCATGATCGACCGTTACCACCACCTTTGAAGGTTGCTAAGCAACTACA
AAAGATGGCTTTAGAGAAGTTAAACACATGGTATGAACGATTTGGTAAAG
GTTACCGGTTACTGGAACTCGCTTTTGAGTTTGTAAGAGATGTGAAGAAa
gtaaaatttgatgaaatgcAGGTACGGACAGCGGCTGAGGTAAGAAACAC
TCAACAGGCTAAATTGAAAGAAGTGAGGTTAACAGCTTCAAAGCTAGAAC
AAGTAGATATACAATATGAAGATCGTAAAGAGAGTTTTCTCTCAGATATC
AAACAAATGAAAAGCTGCTTTGAAATGCTGGTGCAAAAATTATCGAACCA
GCACACAGATACGGGAGACAGCGAAACGATCCATGATCCGGGATTCCTTG
AGGGCAATGAATCTGGCATTACGTCATATAATTTTACGTTGTCTTTGTCG
ATTTCTCAAAAGCATGTTATTTACGAAACACCGGATAACGAGGATGCTAT
ACGAAGGTTACGCGAACTTTATAAGGAGAATCGGGGTCATGAAAATGAGG
CTAAGCGCTGGTTAAACGTATTATTAAAATGCGGGTCAACAGATAAATGG
AAGATTGAAGAGATTTTGAGATTGAAGAACACTTTAAGTGGGTTGTGTAG
TCAATTTTTGGATCTGGAGATTCGGGAAGATGGTTATTTCAGTTCTGATG
ATGATGGAGGAGAAATGTTTGTGGAAGTACCGGAAAAAATGATGAAGACT
TATGTTTATTCAGATATTGATGTTGAGGAAAGACCAACTTGCAGTCGATA
TCTAGAGCCAGACGTAGAAGAAAATATGAAACATGAAGACAAAAGTGAAG
CCTCACACCACTCAAGTGTACGTGAAAAACACTTGGCTATTGCACCTGTT
GTGCCGTTCGATTCCGATTTGAAGTTATGGGAAACCGAATCGGGGAACAT
TGACATAAGCTCATACAAATCGGATTCGTTACATCGCTTTTGGAAAACAA
ACGAACATCAAGAAAATTTTGTGCCGTCAGAAGTCGAAGCTAGtatgaga
gaaagagcttttcGTATGGAAACCAAATTTGAACCAGTTGAGCGGAAATG
CGGCGCTCAATTACCGCAGGGCGGTGTTTGTCAGCGTATGGATCGATACA
AGTGTCCGTTTCACGGAAAGATAGTTGAACGTGACTCCGTAGGGCGAGCT
CTTCATCCTGAAGACATTGAACGGGATAAACAATTAGATGTGcaacgaaa
agaaaaagaatgtcttcaaattcaaaaggaTATCGAGGCAACTACTGGTG
TTTCACTTATCAAGAAAAAGAGACCACGAGTAAGCAAGGCACAAACacga
aaagatattcaaaagaaACGATATGCTCGCTTAACCAACATCAAGAAAAC
TGGTGACAATGAAGTTACCTCGAAANAAAGAGACCACGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051007-exon-scaffold_192-1491911889:16093..16603 | TCONS_00051007-exon-scaffold_192-1491911889:16093..16603 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1510915933:16093..16603 | TCONS_00051007-exon-scaffold_192-1510915933:16093..16603 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1575043694:16093..16603 | TCONS_00051007-exon-scaffold_192-1575043694:16093..16603 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1491911889:17116..17208 | TCONS_00051007-exon-scaffold_192-1491911889:17116..17208 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1510915933:17116..17208 | TCONS_00051007-exon-scaffold_192-1510915933:17116..17208 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1575043694:17116..17208 | TCONS_00051007-exon-scaffold_192-1575043694:17116..17208 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1491911889:17416..17512 | TCONS_00051007-exon-scaffold_192-1491911889:17416..17512 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1510915933:17416..17512 | TCONS_00051007-exon-scaffold_192-1510915933:17416..17512 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1575043694:17416..17512 | TCONS_00051007-exon-scaffold_192-1575043694:17416..17512 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1491911889:18105..18230 | TCONS_00051007-exon-scaffold_192-1491911889:18105..18230 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1510915933:18105..18230 | TCONS_00051007-exon-scaffold_192-1510915933:18105..18230 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1575043694:18105..18230 | TCONS_00051007-exon-scaffold_192-1575043694:18105..18230 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1491911889:19075..19216 | TCONS_00051007-exon-scaffold_192-1491911889:19075..19216 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1510915933:19075..19216 | TCONS_00051007-exon-scaffold_192-1510915933:19075..19216 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1575043694:19075..19216 | TCONS_00051007-exon-scaffold_192-1575043694:19075..19216 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1491911889:22815..23941 | TCONS_00051007-exon-scaffold_192-1491911889:22815..23941 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1510915933:22815..23941 | TCONS_00051007-exon-scaffold_192-1510915933:22815..23941 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1575043694:22815..23941 | TCONS_00051007-exon-scaffold_192-1575043694:22815..23941 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1491911889:24575..24999 | TCONS_00051007-exon-scaffold_192-1491911889:24575..24999 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1510915933:24575..24999 | TCONS_00051007-exon-scaffold_192-1510915933:24575..24999 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1575043694:24575..24999 | TCONS_00051007-exon-scaffold_192-1575043694:24575..24999 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1491911889:26096..26666 | TCONS_00051007-exon-scaffold_192-1491911889:26096..26666 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1510915933:26096..26666 | TCONS_00051007-exon-scaffold_192-1510915933:26096..26666 | Clytia hemisphaerica | exon |
| TCONS_00051007-exon-scaffold_192-1575043694:26096..26666 | TCONS_00051007-exon-scaffold_192-1575043694:26096..26666 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_192 | supercontig | scaffold_192:16093..26666 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00051007 vs. Swiss-Prot (Human)
Match: UVSSA (UV-stimulated scaffold protein A OS=Homo sapiens GN=UVSSA PE=1 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 1.027e-30 Identity = 75/181 (41.44%), Postives = 101/181 (55.80%), Query Frame = 2
Query: 2183 AIAPVVPFDSDLKLWETE---SGNIDISSYKSDSLHRFWKTNEHQENFVPSEVEASMRERAFRMETKFEPVERKCGAQLPQGGVCQRMDRYKCPFHGKIVERDSVGRALHPEDIERDKQLDVQRKEKECLQ---IQKDIEATTGVSLIKKKRPRVSKAQTRKDIQKKRYARLTNIKKTGDN 2707
A APVVP+ DL W E +G I KSDS HRFWK +E +E V +++ +R R KFEPV+ C A P G +C+R DR KCPFHGKIV RD GR L PED R+++ +Q++E+ Q + +D+EA TG L S+ + +K+RY LTN+K D
Sbjct: 497 ARAPVVPYGVDLHYWGQELPTAGKI----VKSDSQHRFWKPSEVEEEVVNADISEMLRSRHITFAGKFEPVQHWCRAPRPDGRLCERQDRLKCPFHGKIVPRDDEGRPLDPEDRAREQRRQLQKQERPEWQDPELMRDVEAATGQDLGS------SRYSGKGRGKKRRYPSLTNLKAQADT 667 HSP 2 Score: 123.25 bits (308), Expect = 1.141e-28 Identity = 63/190 (33.16%), Postives = 114/190 (60.00%), Query Frame = 2
Query: 1061 GKEELDRDHLKKLLNLCRKSHPNLEFSYTKLYEQLQEEHSEIRFSAFQIMDKLFLRSHRFRELLLQDAPDILVVAMGTDQHDRPLPPPLKVAKQLQKMALEKLNTWYERFGKGYRLLELAFEFVRDVKKVKFDEMQVRTAAEVRNTQQAKLKEVRLTASKLEQVDIQYEDRKESFLSDIKQMKSCFEMLV 1630
G+ L+ + +K+L +C+ S L +Y L QL +EH+EIR SAFQI+++LF+RSH+FR L++ + + L + +GTD +PLPPP + A++L++ + W E+FG+ Y+ L L + F+R KKV F + R+ AE + ++ + ++ + Q + + ++ S + +++SCF +LV
Sbjct: 16 GEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLSAFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPA-QPLPPPREAAQRLRQATTRAVEGWNEKFGEAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQAEREMQEMSGEIESCLTEVESCFRLLV 204
The following BLAST results are available for this feature:
|
