TCONS_00051040 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051040
Unique NameTCONS_00051040
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051040 ID=TCONS_00051040|Name=TCONS_00051040|organism=Clytia hemisphaerica|type=transcript|length=572bp
CATGAAGTTGCCTTATCACGACTTCAGTAGAGATGTACAACCTGACGGGA
TGCACACAATCCGTCGAGCAGTGATGAATGTCATCCAGTACATCTCTCGG
CAAGTACAGGCATCTTCGATCGAGCAAGTCACAGCCGCAGAAAAGGAGCT
TCGTggcaaaaagttgaagaaaGACCATACACGCGTGCTTTCTTGCGAAG
AAACGACTCTTGGAAACTCTCGTGTTGACTTGGTTAATTTTCCACCAGAA
TATACTGGCTACAAGGGCAGTGTCTACACCAACGcgaacaaagttttgaa
aaatcaccATGGCTGGCAAGAGtATACTGTTAACAACGTATGGATATTTA
CTCTGCGGAATTCATTATCACAAAGACAGAGACGcacattgttttatttt
tttgcatctTTATCAAACCTTTTCATGAAGAAATTCAACGAAGAAATGCT
AAAATCGGTTGAGGTACACCTCCATCAGTCCGTTGCTTTGATGGAAAGGG
ACTTTCCAGCTGTGATCTTAAACTTCACAACTCACGTGCTTAATCACTTC
GCCAACTCCATGCGACGGTTTG
Run BLAST on NCBI

protein sequence of TCONS_00051040-protein

>TCONS_00051040-protein ID=TCONS_00051040-protein|Name=TCONS_00051040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MKLPYHDFSRDVQPDGMHTIRRAVMNVIQYISRQVQASSIEQVTAAEKEL
RGKKLKKDHTRVLSCEETTLGNSRVDLVNFPPEYTGYKGSVYTNANKVLK
NHHGWQEYTVNNVWIFTLRNSLSQRQRRTLFYFFASLSNLFMKKFNEEML
KSVEVHLHQSVALMERDFPAVILNFTTHVLNHFANSMRRF
Run BLAST on NCBI

transcript from alignment at scaffold_193:68931..70110+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051040 ID=TCONS_00051040|Name=TCONS_00051040|organism=Clytia hemisphaerica|type=transcript|length=1180bp|location=Sequence derived from alignment at scaffold_193:68931..70110+ (Clytia hemisphaerica)
CATGAAGTTGCCTTATCACGACTTCAGTAGAGATGTACAACCTGACGGGA TGCACACAATCCGTCGAGCAGTGATGAATGTCATCCAGTACATCTCTCGG CAAGTACAGGCATCTTCGATCGAGCAAGTCACAGCCGCAGAAAAGGAGCT TCGTggcaaaaagttgaagaaaGACCATACACGCGTGCTTTCTTGTAAGT ATCACTAACTATTTAAATAACAACGTAATAACGTACGCTTCATGTTCTGT AATAGTTTCAAGGCGGGATGGAAAATGATGTCTTTTTATTTATAACAGAG ATAAGTTAGTTGgtcaaaaatttaagataaTTATGAGTACCTTGATACTT TTCCATAGGCGAAGAAACGACTCTTGGAAACTCTCGTGTTGACTTGGTTA ATTTTCCACCAGAATATACTGGCTACAAGGGCAGTGTCTACACCAACGcg aacaaagttttgaaaaatcaccATGGCTGGCAAGAGGTAAAGTNACGcga acaaagttttgaaaaatcaccATGGCTGACAAGAggtaaagtttttcttt aataatttgattCTTTATAAAAGGATTGATTGAACtttctttaatagcaa caaggGGGTTATGCCCCcccataattttttcaaaaattgttattttgcga aatgcaaagtttttagtgcattttcaagcaatctagggctcaaatttttc aaattccccCCCCCTCGCCTCGGGAAAAACCATGGTTCGctctcgcggtg tcactaaacttcagcccccccccaatatgaaaatgtttcctacggcactg ttttATCTCAAAGTTTTTAGATAGCTTCCCCTCTTTTTAGTTTTCTCCCA CCAACTTAGGCATCGAATTACTTTGATCTAAGTAAAAGATTGTAAAGAAA TTGTATTTctgtattttttcacttttttagtATACTGTTAACAACGTATG GATATTTACTCTGCGGAATTCATTATCACAAAGACAGAGACGcacattgt tttatttttttgcatctTTATCAAACCTTTTCATGAAGAAATTCAACGAA GAAATGCTAAAATCGGTTGAGGTACACCTCCATCAGTCCGTTGCTTTGAT GGAAAGGGACTTTCCAGCTGTGATCTTAAACTTCACAACTCACGTGCTTA ATCACTTCGCCAACTCCATGCGACGGTTTG

Coding sequence (CDS) from alignment at scaffold_193:68931..70110+

>TCONS_00051040 ID=TCONS_00051040|Name=TCONS_00051040|organism=Clytia hemisphaerica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_193:68931..70110+ (Clytia hemisphaerica)
ATGAAGTTGCCTTATCACGACTTCAGTAGAGATGTACAACCTGACGGGAT
GCACACAATCCGTCGAGCAGTGATGAATGTCATCCAGTACATCTCTCGGC
AAGTACAGGCATCTTCGATCGAGCAAGTCACAGCCGCAGAAAAGGAGCTT
CGTggcaaaaagttgaagaaaGACCATACACGCGTGCTTTCTTGCGAAGA
AACGACTCTTGGAAACTCTCGTGTTGACTTGGTTAATTTTCCACCAGAAT
ATACTGGCTACAAGGGCAGTGTCTACACCAACGcgaacaaagttttgaaa
aatcaccATGGCTGGCAAGAGtATACTGTTAACAACGTATGGATATTTAC
TCTGCGGAATTCATTATCACAAAGACAGAGACGcacattgttttattttt
ttgcatctTTATCAAACCTTTTCATGAAGAAATTCAACGAAGAAATGCTA
AAATCGGTTGAGGTACACCTCCATCAGTCCGTTGCTTTGATGGAAAGGGA
CTTTCCAGCTGTGATCTTAAACTTCACAACTCACGTGCTTAATCACTTCG
CCAACTCCATGCGACGGTTTATGAAGTTGCCTTATCACGACTTCAGTAGA
GATGTACAACCTGACGGGATGCACACAATCCGTCGAGCAGTGATGAATGT
CATCCAGTACATCTCTCGGCAAGTACAGGCATCTTCGATCGAGCAAGTCA
CAGCCGCAGAAAAGGAGCTTCGTggcaaaaagttgaagaaaGACCATACA
CGCGTGCTTTCTTGCGAAGAAACGACTCTTGGAAACTCTCGTGTTGACTT
GGTTAATTTTCCACCAGAATATACTGGCTACAAGGGCAGTGTCTACACCA
ACGcgaacaaagttttgaaaaatcaccATGGCTGGCAAGAGtATACTGTT
AACAACGTATGGATATTTACTCTGCGGAATTCATTATCACAAAGACAGAG
ACGcacattgttttatttttttgcatctTTATCAAACCTTTTCATGAAGA
AATTCAACGAAGAAATGCTAAAATCGGTTGAGGTACACCTCCATCAGTCC
GTTGCTTTGATGGAAAGGGACTTTCCAGCTGTGATCTTAAACTTCACAAC
TCACGTGCTTAATCACTTCGCCAACTCCATGCGACGGTTTATGAAGTTGC
CTTATCACGACTTCAGTAGAGATGTACAACCTGACGGGATGCACACAATC
CGTCGAGCAGTGATGAATGTCATCCAGTACATCTCTCGGCAAGTACAGGC
ATCTTCGATCGAGCAAGTCACAGCCGCAGAAAAGGAGCTTCGTggcaaaa
agttgaagaaaGACCATACACGCGTGCTTTCTTGCGAAGAAACGACTCTT
GGAAACTCTCGTGTTGACTTGGTTAATTTTCCACCAGAATATACTGGCTA
CAAGGGCAGTGTCTACACCAACGcgaacaaagttttgaaaaatcaccATG
GCTGGCAAGAGtATACTGTTAACAACGTATGGATATTTACTCTGCGGAAT
TCATTATCACAAAGACAGAGACGcacattgttttatttttttgcatctTT
ATCAAACCTTTTCATGAAGAAATTCAACGAAGAAATGCTAAAATCGGTTG
AGGTACACCTCCATCAGTCCGTTGCTTTGATGGAAAGGGACTTTCCAGCT
GTGATCTTAAACTTCACAACTCACGTGCTTAATCACTTCGCCAACTCCAT
GCGACGGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032353XLOC_032353Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051040-proteinTCONS_00051040-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051040-exon-scaffold_193-1491911889:68931..69124TCONS_00051040-exon-scaffold_193-1491911889:68931..69124Clytia hemisphaericaexon
TCONS_00051040-exon-scaffold_193-1510915933:68931..69124TCONS_00051040-exon-scaffold_193-1510915933:68931..69124Clytia hemisphaericaexon
TCONS_00051040-exon-scaffold_193-1575043694:68931..69124TCONS_00051040-exon-scaffold_193-1575043694:68931..69124Clytia hemisphaericaexon
TCONS_00051040-exon-scaffold_193-1491911889:69289..69416TCONS_00051040-exon-scaffold_193-1491911889:69289..69416Clytia hemisphaericaexon
TCONS_00051040-exon-scaffold_193-1510915933:69289..69416TCONS_00051040-exon-scaffold_193-1510915933:69289..69416Clytia hemisphaericaexon
TCONS_00051040-exon-scaffold_193-1575043694:69289..69416TCONS_00051040-exon-scaffold_193-1575043694:69289..69416Clytia hemisphaericaexon
TCONS_00051040-exon-scaffold_193-1491911889:69861..70110TCONS_00051040-exon-scaffold_193-1491911889:69861..70110Clytia hemisphaericaexon
TCONS_00051040-exon-scaffold_193-1510915933:69861..70110TCONS_00051040-exon-scaffold_193-1510915933:69861..70110Clytia hemisphaericaexon
TCONS_00051040-exon-scaffold_193-1575043694:69861..70110TCONS_00051040-exon-scaffold_193-1575043694:69861..70110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:68931..70110 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.293204 0.476534 0.442642 0.866111 0 0.104151 0.251307 0 0.329437 0.102015 0.0990185 0 0.260001 0.0675035 0.110994 0.297784 0.0733692 0.451206 0 0 0 0 0 0.305639 0.419734 0.187301 0.134014 0 0.108478 0.221044
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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