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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051040 ID=TCONS_00051040|Name=TCONS_00051040|organism=Clytia hemisphaerica|type=transcript|length=572bp
CATGAAGTTGCCTTATCACGACTTCAGTAGAGATGTACAACCTGACGGGA
TGCACACAATCCGTCGAGCAGTGATGAATGTCATCCAGTACATCTCTCGG
CAAGTACAGGCATCTTCGATCGAGCAAGTCACAGCCGCAGAAAAGGAGCT
TCGTggcaaaaagttgaagaaaGACCATACACGCGTGCTTTCTTGCGAAG
AAACGACTCTTGGAAACTCTCGTGTTGACTTGGTTAATTTTCCACCAGAA
TATACTGGCTACAAGGGCAGTGTCTACACCAACGcgaacaaagttttgaa
aaatcaccATGGCTGGCAAGAGtATACTGTTAACAACGTATGGATATTTA
CTCTGCGGAATTCATTATCACAAAGACAGAGACGcacattgttttatttt
tttgcatctTTATCAAACCTTTTCATGAAGAAATTCAACGAAGAAATGCT
AAAATCGGTTGAGGTACACCTCCATCAGTCCGTTGCTTTGATGGAAAGGG
ACTTTCCAGCTGTGATCTTAAACTTCACAACTCACGTGCTTAATCACTTC
GCCAACTCCATGCGACGGTTTG Run BLAST on NCBI protein sequence of TCONS_00051040-protein >TCONS_00051040-protein ID=TCONS_00051040-protein|Name=TCONS_00051040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MKLPYHDFSRDVQPDGMHTIRRAVMNVIQYISRQVQASSIEQVTAAEKEL
RGKKLKKDHTRVLSCEETTLGNSRVDLVNFPPEYTGYKGSVYTNANKVLK
NHHGWQEYTVNNVWIFTLRNSLSQRQRRTLFYFFASLSNLFMKKFNEEML
KSVEVHLHQSVALMERDFPAVILNFTTHVLNHFANSMRRF Run BLAST on NCBI transcript from alignment at scaffold_193:68931..70110+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051040 ID=TCONS_00051040|Name=TCONS_00051040|organism=Clytia hemisphaerica|type=transcript|length=1180bp|location=Sequence derived from alignment at scaffold_193:68931..70110+ (Clytia hemisphaerica)
CATGAAGTTGCCTTATCACGACTTCAGTAGAGATGTACAACCTGACGGGA
TGCACACAATCCGTCGAGCAGTGATGAATGTCATCCAGTACATCTCTCGG
CAAGTACAGGCATCTTCGATCGAGCAAGTCACAGCCGCAGAAAAGGAGCT
TCGTggcaaaaagttgaagaaaGACCATACACGCGTGCTTTCTTGTAAGT
ATCACTAACTATTTAAATAACAACGTAATAACGTACGCTTCATGTTCTGT
AATAGTTTCAAGGCGGGATGGAAAATGATGTCTTTTTATTTATAACAGAG
ATAAGTTAGTTGgtcaaaaatttaagataaTTATGAGTACCTTGATACTT
TTCCATAGGCGAAGAAACGACTCTTGGAAACTCTCGTGTTGACTTGGTTA
ATTTTCCACCAGAATATACTGGCTACAAGGGCAGTGTCTACACCAACGcg
aacaaagttttgaaaaatcaccATGGCTGGCAAGAGGTAAAGTNACGcga
acaaagttttgaaaaatcaccATGGCTGACAAGAggtaaagtttttcttt
aataatttgattCTTTATAAAAGGATTGATTGAACtttctttaatagcaa
caaggGGGTTATGCCCCcccataattttttcaaaaattgttattttgcga
aatgcaaagtttttagtgcattttcaagcaatctagggctcaaatttttc
aaattccccCCCCCTCGCCTCGGGAAAAACCATGGTTCGctctcgcggtg
tcactaaacttcagcccccccccaatatgaaaatgtttcctacggcactg
ttttATCTCAAAGTTTTTAGATAGCTTCCCCTCTTTTTAGTTTTCTCCCA
CCAACTTAGGCATCGAATTACTTTGATCTAAGTAAAAGATTGTAAAGAAA
TTGTATTTctgtattttttcacttttttagtATACTGTTAACAACGTATG
GATATTTACTCTGCGGAATTCATTATCACAAAGACAGAGACGcacattgt
tttatttttttgcatctTTATCAAACCTTTTCATGAAGAAATTCAACGAA
GAAATGCTAAAATCGGTTGAGGTACACCTCCATCAGTCCGTTGCTTTGAT
GGAAAGGGACTTTCCAGCTGTGATCTTAAACTTCACAACTCACGTGCTTA
ATCACTTCGCCAACTCCATGCGACGGTTTG Coding sequence (CDS) from alignment at scaffold_193:68931..70110+ >TCONS_00051040 ID=TCONS_00051040|Name=TCONS_00051040|organism=Clytia hemisphaerica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_193:68931..70110+ (Clytia hemisphaerica)
ATGAAGTTGCCTTATCACGACTTCAGTAGAGATGTACAACCTGACGGGAT
GCACACAATCCGTCGAGCAGTGATGAATGTCATCCAGTACATCTCTCGGC
AAGTACAGGCATCTTCGATCGAGCAAGTCACAGCCGCAGAAAAGGAGCTT
CGTggcaaaaagttgaagaaaGACCATACACGCGTGCTTTCTTGCGAAGA
AACGACTCTTGGAAACTCTCGTGTTGACTTGGTTAATTTTCCACCAGAAT
ATACTGGCTACAAGGGCAGTGTCTACACCAACGcgaacaaagttttgaaa
aatcaccATGGCTGGCAAGAGtATACTGTTAACAACGTATGGATATTTAC
TCTGCGGAATTCATTATCACAAAGACAGAGACGcacattgttttattttt
ttgcatctTTATCAAACCTTTTCATGAAGAAATTCAACGAAGAAATGCTA
AAATCGGTTGAGGTACACCTCCATCAGTCCGTTGCTTTGATGGAAAGGGA
CTTTCCAGCTGTGATCTTAAACTTCACAACTCACGTGCTTAATCACTTCG
CCAACTCCATGCGACGGTTTATGAAGTTGCCTTATCACGACTTCAGTAGA
GATGTACAACCTGACGGGATGCACACAATCCGTCGAGCAGTGATGAATGT
CATCCAGTACATCTCTCGGCAAGTACAGGCATCTTCGATCGAGCAAGTCA
CAGCCGCAGAAAAGGAGCTTCGTggcaaaaagttgaagaaaGACCATACA
CGCGTGCTTTCTTGCGAAGAAACGACTCTTGGAAACTCTCGTGTTGACTT
GGTTAATTTTCCACCAGAATATACTGGCTACAAGGGCAGTGTCTACACCA
ACGcgaacaaagttttgaaaaatcaccATGGCTGGCAAGAGtATACTGTT
AACAACGTATGGATATTTACTCTGCGGAATTCATTATCACAAAGACAGAG
ACGcacattgttttatttttttgcatctTTATCAAACCTTTTCATGAAGA
AATTCAACGAAGAAATGCTAAAATCGGTTGAGGTACACCTCCATCAGTCC
GTTGCTTTGATGGAAAGGGACTTTCCAGCTGTGATCTTAAACTTCACAAC
TCACGTGCTTAATCACTTCGCCAACTCCATGCGACGGTTTATGAAGTTGC
CTTATCACGACTTCAGTAGAGATGTACAACCTGACGGGATGCACACAATC
CGTCGAGCAGTGATGAATGTCATCCAGTACATCTCTCGGCAAGTACAGGC
ATCTTCGATCGAGCAAGTCACAGCCGCAGAAAAGGAGCTTCGTggcaaaa
agttgaagaaaGACCATACACGCGTGCTTTCTTGCGAAGAAACGACTCTT
GGAAACTCTCGTGTTGACTTGGTTAATTTTCCACCAGAATATACTGGCTA
CAAGGGCAGTGTCTACACCAACGcgaacaaagttttgaaaaatcaccATG
GCTGGCAAGAGtATACTGTTAACAACGTATGGATATTTACTCTGCGGAAT
TCATTATCACAAAGACAGAGACGcacattgttttatttttttgcatctTT
ATCAAACCTTTTCATGAAGAAATTCAACGAAGAAATGCTAAAATCGGTTG
AGGTACACCTCCATCAGTCCGTTGCTTTGATGGAAAGGGACTTTCCAGCT
GTGATCTTAAACTTCACAACTCACGTGCTTAATCACTTCGCCAACTCCAT
GCGACGGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051040-exon-scaffold_193-1491911889:68931..69124 | TCONS_00051040-exon-scaffold_193-1491911889:68931..69124 | Clytia hemisphaerica | exon |
| TCONS_00051040-exon-scaffold_193-1510915933:68931..69124 | TCONS_00051040-exon-scaffold_193-1510915933:68931..69124 | Clytia hemisphaerica | exon |
| TCONS_00051040-exon-scaffold_193-1575043694:68931..69124 | TCONS_00051040-exon-scaffold_193-1575043694:68931..69124 | Clytia hemisphaerica | exon |
| TCONS_00051040-exon-scaffold_193-1491911889:69289..69416 | TCONS_00051040-exon-scaffold_193-1491911889:69289..69416 | Clytia hemisphaerica | exon |
| TCONS_00051040-exon-scaffold_193-1510915933:69289..69416 | TCONS_00051040-exon-scaffold_193-1510915933:69289..69416 | Clytia hemisphaerica | exon |
| TCONS_00051040-exon-scaffold_193-1575043694:69289..69416 | TCONS_00051040-exon-scaffold_193-1575043694:69289..69416 | Clytia hemisphaerica | exon |
| TCONS_00051040-exon-scaffold_193-1491911889:69861..70110 | TCONS_00051040-exon-scaffold_193-1491911889:69861..70110 | Clytia hemisphaerica | exon |
| TCONS_00051040-exon-scaffold_193-1510915933:69861..70110 | TCONS_00051040-exon-scaffold_193-1510915933:69861..70110 | Clytia hemisphaerica | exon |
| TCONS_00051040-exon-scaffold_193-1575043694:69861..70110 | TCONS_00051040-exon-scaffold_193-1575043694:69861..70110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:68931..70110 + |
Blast
The following BLAST results are available for this feature:
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