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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051050 ID=TCONS_00051050|Name=TCONS_00051050|organism=Clytia hemisphaerica|type=transcript|length=1436bpRun BLAST on NCBI protein sequence of TCONS_00051050-protein >TCONS_00051050-protein ID=TCONS_00051050-protein|Name=TCONS_00051050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp MRDLMHKLEKKRGNVEITFDDIINDEALNEIESEDADLKDFFQKIEIIKERun BLAST on NCBI transcript from alignment at scaffold_193:211260..226621+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051050 ID=TCONS_00051050|Name=TCONS_00051050|organism=Clytia hemisphaerica|type=transcript|length=15362bp|location=Sequence derived from alignment at scaffold_193:211260..226621+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_193:211260..226621+ >TCONS_00051050 ID=TCONS_00051050|Name=TCONS_00051050|organism=Clytia hemisphaerica|type=CDS|length=9060bp|location=Sequence derived from alignment at scaffold_193:211260..226621+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051050 vs. Swiss-Prot (Human)
Match: STX1A (Syntaxin-1A OS=Homo sapiens GN=STX1A PE=1 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.507e-39 Identity = 76/193 (39.38%), Postives = 128/193 (66.32%), Query Frame = 2
Query: 395 MADISKRSQRTKRLLKEIKEGVEEDQENGDNSSHCRMKRCQFNALSLEFMDNMTRYNAIQELFRAKSKSRIKRQLNITKKTXXXXXXXXXXXXXXXPINIFTQGIVTDTDDAKRRLKEVEDRHNDIIKLEKSVQELHSLFKDISILIDKQGDLIDHIETNVENATEYIASAIPKIHAAVRYKNKANRKKIMLF 973
M+DI K + + + LK I++ +E+++ +S+ R+++ Q + LS +F++ M+ YNA Q +R + K RI+RQL IT +T S+E + + I F GI+ D+ +K+ L E+E RH++IIKLE S++ELH +F D+++L++ QG++ID IE NVE+A +Y+ A+ AV+Y++KA RKKIM+
Sbjct: 79 MSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAI--FASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMII 269 The following BLAST results are available for this feature:
BLAST of TCONS_00051050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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