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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051158 ID=TCONS_00051158|Name=TCONS_00051158|organism=Clytia hemisphaerica|type=transcript|length=2194bp
GCCGTTTTCAAGGTATATGTCgtacaaaaaagattttcagattttttaac
aaataaaaacgTAGAtagtatatttttcaaaagccCGAGTTTCTACTTTG
GGTTTAGGATTGCTAACTAGTATCGAAAAGTCAAGGTAGGAAAGAATGGT
CATTTACATCAATCTGCAAGTAGAAGCAGCATNTAGTATCCAAAAGTCAA
GGTAGGAAAGAATGGTCATTTACATCAATCTGCAAGTAGAAGCagcatct
ttatttataagcaaACTTAACTCGTTGACTGTCACTAGCAAATCACGTGT
CTTTAGATCAATCTTGACCTCGTTTTCATCCCTGATTTCGAGCAGTTGAC
ATTTCTTTAAACCGTACaattgcaaaatttctttggtcaAATCTTTGACT
GTTTTCCGgcaatttttgtcaataatcTCAGAATATTCCACCTTTTCACC
AGTATCTACGAAATGAAGTCGTATCATTAACTTTTGTTTGAGAACCAGAT
CAGGCCATCCTGGAGTAAACATGTAATCTTGGAGAGTTTTCTCATCATCA
TCCAGTACTGTTGTACCAATATAAAGTTGTCTGTATTTAAACGGGACCCC
TGTTCTAGCTTCAATACATCTTTTGATTGTTGAAATTGTATAAGAATTTT
TTACTAGAACAGTGAATGTATCTTCATACGCAATCATATTTTGGAATACT
GTTAAGATGAAACTATCTTCAACGACAATCACATTTAAAACCACAGGCTT
CATAGAGTTTTCTTCTATATGAAGATCGAATAAAGGTTGATCTCCTTTAA
GCTGTTGGTTTCTGAAAACCAGTGATTGATCTTCCAGTctgattttgtac
tttttgagTATATATCTTTTGACGTCGTTTACAAATTTGAATTGGTGTGT
CCTCAAATCTTCCtctctcgttaaaaatttcaatgtGAACACTTCGAAAT
TCTTGATACCGAGGGTGAACAAGTTATCTTCAAACCTATCGGTAACAGCC
AAATAAATGACCACATTGTCGCTAAAGACGTCGCTAGGTTTTACTTCCTT
TCCCATAGTAATTAAAATTTGGTTTGAGATTgggattttccatttttcat
gtATTAAATGATTAAGACGCGCTTTATTAAAGTTTTGGTACACGAAAACA
TGTAGTACTTTATGTGAGCCGAAAGCTTTAACTGTCAAACGTTTCCAAAT
GGATAGGTGTATTTCACTGATCTTTCTAACTGGTGCTTCTAACTGATCGT
TGTCGAGCACCGCTAAATGTAATTGGAGCACTTTAATGGTTTTCTTTTGT
AAGTTATCTTCTTCTGGGATAAAAACATATCTTTGTTCAATTATATAGTT
CAATTCTAATATAGGTTTCATTAAATCGGCGTCGTATAAAAGCCGTAAAA
GTTCTGGTTCTTCGGTGTATGGTTCAAAAAGAAGTTGATTTGAGCACGGT
ATATCGGTATATTCTTCGATTTCTTGCTGGAGACTTGACACTGACACCTC
TTCTGAAAATTTAACATTGAAACAACAAATCTTTGGTTGATAAAGACGAC
GCAATCCTTCTTGAGTTCTAAAAGCTAAAATTTCAACTCTGAGTTCATCA
TCATTCGGGCATGGATTGTACGGGTATTGATGGCACTTCCCACATCTGTT
CGGCGTACCTGACATCAATACTGAACCGAACAGTATTTCATTACATCCCG
TGCATCAGACTATCCCGTTtgattgttttgctttgtaGATGTCAGAACAA
TATCCGCTAcgacatgtttccattttattGCCACAGTGACATCGTCGACT
GACGGAGTTTTTTGAATTCAAACGGTCGCAAGTTTATCTTATAAAATGAC
ATACTATAGTGTCGTTATCACGCTGACTGAAGATATCGAtttctactttt
ctttcaaTGTCACTTTGCTGGAGAAATCACGATATGGTAAGATAATAAAA
CAATCAtgaattttttcaatcaatgtgGTCACAGAGCAAATAGTGTCTGA
TAATGAATATAGATGACTCAATTGAAAAACTGAAGCAACCGTGTATTGTG
ATTCTTTCTAAAAACGTTCATCCAATTGTCGAAAACGTATCAAAGTCATG
ATCGAACAAACGTAAGAAAAATTATCTTGTAATAAAACAAGTCTACATCG
ATATACGATACGAGAAGCTTCTGTTTGATGGAAAGTCCTTTAAA Run BLAST on NCBI protein sequence of TCONS_00051158-protein >TCONS_00051158-protein ID=TCONS_00051158-protein|Name=TCONS_00051158-protein|organism=Clytia hemisphaerica|type=polypeptide|length=481bp
MSGTPNRCGKCHQYPYNPCPNDDELRVEILAFRTQEGLRRLYQPKICCFN
VKFSEEVSVSSLQQEIEEYTDIPCSNQLLFEPYTEEPELLRLLYDADLMK
PILELNYIIEQRYVFIPEEDNLQKKTIKVLQLHLAVLDNDQLEAPVRKIS
EIHLSIWKRLTVKAFGSHKVLHVFVYQNFNKARLNHLIHEKWKIPISNQI
LITMGKEVKPSDVFSDNVVIYLAVTDRFEDNLFTLGIKNFEVFTLKFLTR
EEDLRTHQFKFVNDVKRYILKKYKIRLEDQSLVFRNQQLKGDQPLFDLHI
EENSMKPVVLNVIVVEDSFILTVFQNMIAYEDTFTVLVKNSYTISTIKRC
IEARTGVPFKYRQLYIGTTVLDDDEKTLQDYMFTPGWPDLVLKQKLMIRL
HFVDTGEKVEYSEIIDKNCRKTVKDLTKEILQLYGLKKCQLLEIRDENEV
KIDLKTRDLLVTVNELSLLINKDAASTCRLM Run BLAST on NCBI transcript from alignment at scaffold_199:117445..119638 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051158 ID=TCONS_00051158|Name=TCONS_00051158|organism=Clytia hemisphaerica|type=transcript|length=2194bp|location=Sequence derived from alignment at scaffold_199:117445..119638 (Clytia hemisphaerica)
TTTAAAGGACTTTCCATCAAACAGAAGCTTCTCGTATCGTATATCGATGT
AGACTTGTTTTATTACAAGATAATTTTTCTTACGTTTGTTCGATCATGAC
TTTGATACGTTTTCGACAATTGGATGAACGTTTTTAGAAAGAATCACAAT
ACACGGTTGCTTCAGTTTTTCAATTGAGTCATCTATATTCATTATCAGAC
ACTATTTGCTCTGTGACcacattgattgaaaaaattcaTGATTGTTTTAT
TATCTTACCATATCGTGATTTCTCCAGCAAAGTGACAttgaaagaaaagt
agaaaTCGATATCTTCAGTCAGCGTGATAACGACACTATAGTATGTCATT
TTATAAGATAAACTTGCGACCGTTTGAATTCAAAAAACTCCGTCAGTCGA
CGATGTCACTGTGGCaataaaatggaaacatgtcgTAGCGGATATTGTTC
TGACATCtacaaagcaaaacaatcaAACGGGATAGTCTGATGCACGGGAT
GTAATGAAATACTGTTCGGTTCAGTATTGATGTCAGGTACGCCGAACAGA
TGTGGGAAGTGCCATCAATACCCGTACAATCCATGCCCGAATGATGATGA
ACTCAGAGTTGAAATTTTAGCTTTTAGAACTCAAGAAGGATTGCGTCGTC
TTTATCAACCAAAGATTTGTTGTTTCAATGTTAAATTTTCAGAAGAGGTG
TCAGTGTCAAGTCTCCAGCAAGAAATCGAAGAATATACCGATATACCGTG
CTCAAATCAACTTCTTTTTGAACCATACACCGAAGAACCAGAACTTTTAC
GGCTTTTATACGACGCCGATTTAATGAAACCTATATTAGAATTGAACTAT
ATAATTGAACAAAGATATGTTTTTATCCCAGAAGAAGATAACTTACAAAA
GAAAACCATTAAAGTGCTCCAATTACATTTAGCGGTGCTCGACAACGATC
AGTTAGAAGCACCAGTTAGAAAGATCAGTGAAATACACCTATCCATTTGG
AAACGTTTGACAGTTAAAGCTTTCGGCTCACATAAAGTACTACATGTTTT
CGTGTACCAAAACTTTAATAAAGCGCGTCTTAATCATTTAATacatgaaa
aatggaaaatcccAATCTCAAACCAAATTTTAATTACTATGGGAAAGGAA
GTAAAACCTAGCGACGTCTTTAGCGACAATGTGGTCATTTATTTGGCTGT
TACCGATAGGTTTGAAGATAACTTGTTCACCCTCGGTATCAAGAATTTCG
AAGTGTTCacattgaaatttttaacgagagaGGAAGATTTGAGGACACAC
CAATTCAAATTTGTAAACGACGTCAAAAGATATATActcaaaaagtacaa
aatcagACTGGAAGATCAATCACTGGTTTTCAGAAACCAACAGCTTAAAG
GAGATCAACCTTTATTCGATCTTCATATAGAAGAAAACTCTATGAAGCCT
GTGGTTTTAAATGTGATTGTCGTTGAAGATAGTTTCATCTTAACAGTATT
CCAAAATATGATTGCGTATGAAGATACATTCACTGTTCTAGTAAAAAATT
CTTATACAATTTCAACAATCAAAAGATGTATTGAAGCTAGAACAGGGGTC
CCGTTTAAATACAGACAACTTTATATTGGTACAACAGTACTGGATGATGA
TGAGAAAACTCTCCAAGATTACATGTTTACTCCAGGATGGCCTGATCTGG
TTCTCAAACAAAAGTTAATGATACGACTTCATTTCGTAGATACTGGTGAA
AAGGTGGAATATTCTGAgattattgacaaaaattgcCGGAAAACAGTCAA
AGATTtgaccaaagaaattttgcaattGTACGGTTTAAAGAAATGTCAAC
TGCTCGAAATCAGGGATGAAAACGAGGTCAAGATTGATCTAAAGACACGT
GATTTGCTAGTGACAGTCAACGAGTTAAGTttgcttataaataaagatgc
tGCTTCTACTTGCAGATTGATGTAAATGACCATTCTTTCCTACCTTGACT
TTTGGATACTANATGCTGCTTCTACTTGCAGATTGATGTAAATGACCATT
CTTTCCTACCTTGACTTTTCGATACTAGTTAGCAATCCTAAACCCAAAGT
AGAAACTCGggcttttgaaaaatatactaTCTAcgtttttatttgttaaa
aaatctgaaaatcttttttgtacGACATATACCTTGAAAACGGC Coding sequence (CDS) from alignment at scaffold_199:117445..119638 >TCONS_00051158 ID=TCONS_00051158|Name=TCONS_00051158|organism=Clytia hemisphaerica|type=CDS|length=1446bp|location=Sequence derived from alignment at scaffold_199:117445..119638 (Clytia hemisphaerica)
ATGTCAGGTACGCCGAACAGATGTGGGAAGTGCCATCAATACCCGTACAA
TCCATGCCCGAATGATGATGAACTCAGAGTTGAAATTTTAGCTTTTAGAA
CTCAAGAAGGATTGCGTCGTCTTTATCAACCAAAGATTTGTTGTTTCAAT
GTTAAATTTTCAGAAGAGGTGTCAGTGTCAAGTCTCCAGCAAGAAATCGA
AGAATATACCGATATACCGTGCTCAAATCAACTTCTTTTTGAACCATACA
CCGAAGAACCAGAACTTTTACGGCTTTTATACGACGCCGATTTAATGAAA
CCTATATTAGAATTGAACTATATAATTGAACAAAGATATGTTTTTATCCC
AGAAGAAGATAACTTACAAAAGAAAACCATTAAAGTGCTCCAATTACATT
TAGCGGTGCTCGACAACGATCAGTTAGAAGCACCAGTTAGAAAGATCAGT
GAAATACACCTATCCATTTGGAAACGTTTGACAGTTAAAGCTTTCGGCTC
ACATAAAGTACTACATGTTTTCGTGTACCAAAACTTTAATAAAGCGCGTC
TTAATCATTTAATacatgaaaaatggaaaatcccAATCTCAAACCAAATT
TTAATTACTATGGGAAAGGAAGTAAAACCTAGCGACGTCTTTAGCGACAA
TGTGGTCATTTATTTGGCTGTTACCGATAGGTTTGAAGATAACTTGTTCA
CCCTCGGTATCAAGAATTTCGAAGTGTTCacattgaaatttttaacgaga
gaGGAAGATTTGAGGACACACCAATTCAAATTTGTAAACGACGTCAAAAG
ATATATActcaaaaagtacaaaatcagACTGGAAGATCAATCACTGGTTT
TCAGAAACCAACAGCTTAAAGGAGATCAACCTTTATTCGATCTTCATATA
GAAGAAAACTCTATGAAGCCTGTGGTTTTAAATGTGATTGTCGTTGAAGA
TAGTTTCATCTTAACAGTATTCCAAAATATGATTGCGTATGAAGATACAT
TCACTGTTCTAGTAAAAAATTCTTATACAATTTCAACAATCAAAAGATGT
ATTGAAGCTAGAACAGGGGTCCCGTTTAAATACAGACAACTTTATATTGG
TACAACAGTACTGGATGATGATGAGAAAACTCTCCAAGATTACATGTTTA
CTCCAGGATGGCCTGATCTGGTTCTCAAACAAAAGTTAATGATACGACTT
CATTTCGTAGATACTGGTGAAAAGGTGGAATATTCTGAgattattgacaa
aaattgcCGGAAAACAGTCAAAGATTtgaccaaagaaattttgcaattGT
ACGGTTTAAAGAAATGTCAACTGCTCGAAATCAGGGATGAAAACGAGGTC
AAGATTGATCTAAAGACACGTGATTTGCTAGTGACAGTCAACGAGTTAAG
TttgcttataaataaagatgctGCTTCTACTTGCAGATTGATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051158-exon-scaffold_199-1491911889:117445..119638 | TCONS_00051158-exon-scaffold_199-1491911889:117445..119638 | Clytia hemisphaerica | exon |
| TCONS_00051158-exon-scaffold_199-1510915933:117445..119638 | TCONS_00051158-exon-scaffold_199-1510915933:117445..119638 | Clytia hemisphaerica | exon |
| TCONS_00051158-exon-scaffold_199-1575043694:117445..119638 | TCONS_00051158-exon-scaffold_199-1575043694:117445..119638 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_199 | supercontig | scaffold_199:117445..119638 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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