TCONS_00051164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051164
Unique NameTCONS_00051164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1681

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051164 ID=TCONS_00051164|Name=TCONS_00051164|organism=Clytia hemisphaerica|type=transcript|length=1681bp
TTCAAATTCTTGAAAGATACTTTGAAGAATTTGGGTAAAAGTATAGTCTG
TATTTTGTTTGAAGATGAAACGCGTTTAAAACACGGGTAACATTCAAAAA
ACGCGTTTAAAACTcagatctttattttgatgtgttGTCTCGAGCcagtc
tttcaaaaaaaaaatcacaacaagaaaaatcaaaattgggTCGAAGCAGG
ACTCTGTACCCTTCATCAAAATTTGGACTTGTCTGGATATTCTCTCGTAA
CTTCAAGAACAAAGatGTGGCTTTGGGATTACTTTACTGGTGCATTGAAG
TACCTCGGTTTGATGAATAAAAATGGAAAACTTGTCTTCCTTGGACTTGA
CAATGCTGGTAAAACAACGCTATTACATATGTTAAAAGACAACAGAATGG
GACAGCACGTCCCAACTCTACATCCCACTGCTGAGGAATTAACAATGGGT
GGTATgaaattcaaaacattcgatttgggAGGTCACAAACAAGCACGAAG
GGTATGGAAACAATATTTCCCTGCTGTCGACGGAATTGTCTTCATTATTG
ACGTCGCTGATCCAGAACGATTACCAGAATCCAAAGCCGAATTCGACagT
TTACTAGCGGACGAACAACTTGCAAACGCACCCATTTTGATATTAGGAAA
TAAAATCGACAAACCAGAAGCCGTCGGCGAAGATTACATCAGACAATATT
TCGGTTTATTCGGCCTCACTTCAGGAAAGAACGTTGCAGCGAAAGACATG
AACGCTCGTCCTATCGAATTATTTATGGTTTCTGTTCTAAAACGACAAGG
TTACGGTGAAGGTTTCCGCTGGTTATCACAATTCATAAATTAATTTGCCT
TTCCAAAGGATGATAGATAATCATTAGAGCCAACAGATCCAATAGTCGAG
AGGACCTGTTTAAAACCCAACCATCTCGAGAGGGAGTTTAAAGTCATTCA
TAATGAAACAGTTGATGAAGGGTGACCGAAACTTAGAAAGCCATGCAATT
CAGTACAATACAACAGTGGACATTGTTTTAATTAGGTATTGAAAGAGCGA
GACAATGAATGTGAATGTGAATTGTCGCTTCcgttttgaatattttattt
gGAGATGTCCCAAAGAATTATTTCGACCGTTCGTTTTTATAGATAGTTTT
TAAAGttagtctttttttttgttcgtctTTATTGAATTGCATCTTTTGAT
CTTTGGTTTAGTTCATCCCAacttaaactttttttaaatttttagcgaAT
ATTTTTCTATGCAGGACAGTGTCTCGTATCTATGTTGGTTTCGATTTTTT
ATTCCATGTTGAAAAACATTCTTTCCTCAAAAACCTTCTTCTCTTCACTT
TTAGCTTAGGTCTTTATAAAATTGTTTACTCTGTTCTATATATCTATTTG
ATACTTTAGAATATATAGTAAACCTtatattttttggtattttttttcgc
TTTTGACGTTAACAAATTTTATGAAAGCTCGGAAAAATTGTAATATCTAC
GAATTTGTATACAAAGATAAATTAATCTACAATCGAATACTATAGTCTCT
TTGTTTGGCATTTAGCTTaatatactttaggcgtacaaactttcgcgagc
agaaactttcgcgaggacgaaaaatcgcgaaattcacgacatttactttc
gcgaatttaacggaaaaataattttcgcgag
Run BLAST on NCBI

protein sequence of TCONS_00051164-protein

>TCONS_00051164-protein ID=TCONS_00051164-protein|Name=TCONS_00051164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MCCLEPVFQKKNHNKKNQNWVEAGLCTLHQNLDLSGYSLVTSRTKMWLWD
YFTGALKYLGLMNKNGKLVFLGLDNAGKTTLLHMLKDNRMGQHVPTLHPT
AEELTMGGMKFKTFDLGGHKQARRVWKQYFPAVDGIVFIIDVADPERLPE
SKAEFDSLLADEQLANAPILILGNKIDKPEAVGEDYIRQYFGLFGLTSGK
NVAAKDMNARPIELFMVSVLKRQGYGEGFRWLSQFIN
Run BLAST on NCBI

transcript from alignment at scaffold_2:48178..61377+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051164 ID=TCONS_00051164|Name=TCONS_00051164|organism=Clytia hemisphaerica|type=transcript|length=13200bp|location=Sequence derived from alignment at scaffold_2:48178..61377+ (Clytia hemisphaerica)
TTCAAATTCTTGAAAGATACTTTGAAGAATTTGGGTAAAAGTATAGTCTG
TATTTTGTTTGAAGATGAAACGCGTTTAAAACACGGGTAACATTCAAAAA
ACGCGTTTAAAACTcagatctttattttgatgtgttGTCTCGAGCcagtc
tttcaaaaaaaaaatcacaacaagaaaaatcaaaattgggTCGAAGCAGG
ACTCTGTACCCTTCATCAAAATTTGGACTTGTCTGGATATTCTCTCGTAA
CTTCAAGAACAAAGGTAAGAATCTTATCATAGTTGTGTTAAGCCTTGCTG
ACTTTTCTGCAGCTGTGACTTGCcagaggaccctgccgacgcaccggact
gtccggtgtaatTGTCTGgttgcaaaaagtatcctttgctacaccggacg
caataagtccggtgttgcatatagggaattttggacgccgaacatttcat
ttatgaaacaaaaaattaagaaacaccggacagACCGCCGGGCTGGTCAT
GTCAGGTGTTTTgattgattgtccggtgggaaaaatatccttctccgacg
cTGGACATGcgacttccttaagtctggtgtagaaattgtccaatggtaaa
aaaattctcattttacaccggacttttgtGTGTCCGGTGTTcattaagtc
cggtgcgtcgacaGGGTCCTCTTGCAGTCTGGGAAATCCGCTCAagtgca
cgcttatgttccgaggccgtaagcgcgcaattgcacggttatcaaaatgg
cagaatttttaagcgtgtaattacacgcttatcgaaattgttctgaaacg
ggcggtgtaagcgttaagcaagattgacgggtgacggcttttgcgtccaa
ttgcacgctttaaaatttcctatatttttgacacacaattccttccgaaa
gctctgttgaatttcaaaagcctagggcagttttactcaaaatttatcgt
agaagaagattccataaaaatggattgcccgttaaaccaNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
atgccttcgcccgaattagagaattctgaaccccttgaaatccctaagca
atttcaaccggggcgggagcgggcgtaaattataaccatgcaattgcgcg
ctcACGCCCtaggaacataagcgtgcaattgagatgATTTCCCAGACTGT
CTTGCCAGTATctcagtcagtcaggcacatcctcgcaaatgaacggggtg
agcatttgcatggggtattcgtcacccagtgtaaatgagataggacgtct
caggctaaaagcgtgaaaatgaataaaaatgaacttcaaactgaaaaagg
gaaaaaaggaagaaaactgggaactgtatttcttcattaaaagtttcttc
aatcttcgaagacaaaattgacccatggaaaaaaaatttcatctatgcag
ttctttgaaatgaagcaaaatatttccaacccggtNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcggcgctattacg
tcactttcgttttcgaccccgttcatttgccaatggtcgcaagtgaaaaa
taccccgttcatttgccaggatgtgcctgactgtcagTTCACTCTAAGAG
AAAATCAaggtttcagaaaaaacaacttGACACCCGCTAGCAGCGGTCAA
CTGACAATCAATCTGTTTTAAAAGTAGGGTTTTTTTAAATTGAGGATTCT
TGTGGATATACAGCCCCATAAATCTGGTCTAATACagaccaccaatcaaa
cttttcgaaccaatcaaacaatcTGTGGCAGAGCGGCACGAACTTGTCAA
ACACGAAATTGATCAAAAAGCAACCCATTGATTTTTaaccataattttta
aaaaaatatatgagttcgataaatttttttaatcaaactttaatcgttaC
TCGATGTAGTTCAAATACAAAAGAACGATCGATCAGGTCTGGTGGTGTCA
TAGTTGTAACGGCTACTTCATAATTAGAGCTGATAGATCACGaaccaaaa
agaaatatggtcGACACAGTGGAGGAGTAGCACTTTACATTAGAAAAGAC
ATCAGTTCAACCTTTAAACCAGTGTTGCAGTATTCAAATGGTGTGAATGA
ACTGCTAATTGTTCACTCCAAGAAATNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTGCAAATGAATTTACGTTACAACAGTGTATCCTTAAGGAAACACA
CAAAGATGGCAATATACTTGACTTAGTATGGACAAACAACCGTGAATTAG
TACATTAGAACCCAAACATAACGCACCATTCATCTGTAAATATTAACATT
CATAAAACTATAGAAGCAGTAACTGAAACAAACAACAGAATTCCAAGTAA
CTCATTTGAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCAAGT
AActcatttgaaaaattcaatttctatcaCGAAGAAATTGCCTGGGAATC
TGTAAAAAATGAACTGTCTCAAATTGACTGGGACAATGAGTTTTAAGAAT
TAAAATCtgtagaaaaatttgaaaaactgttgaaaatatgcaaaaaaatt
gtagaaaaattacaaaacgaacaaaaataaaagaattccgAGAGAAAGGA
GGATTCTAATGAGGAGGCGTTCTAAGCTAGAAAAACGATTCATCTTGGCA
AGAAACTGttttcagattaaaaaaatcaaaacccaacttgttgatgttga
aaaacaattacaaaccTCATACAGGAAGAGTACTACAACTGCAGAAAAGA
AAGCGTGTGAAGCGATCAAACtaaatccaaaatatttcttttcttatgCT
AAAAGACATAGTAAGACCAAAGCTAGAATTGGTCCTTTAATAGATAAAAC
AACAAACAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAACAAACAATTATGTGTCT
GACAGTAAAAAAATGGCAGACATTCTTCAAAAACAGTACCAATCAGTCTT
CAGTACACCACTCGAAAACGCAAAATATATTGATAAAGACGGTGATTTTG
TTTTGACTGATATTGATTTTACGAAAGAGGACTTTGTTGAGGAGATTGGA
ACAATATCCAAAAATGCAGCACCAAGACCCGATGGTTTTTCTGCaatctt
tctcaaaaattgtAGTCAAGAACTAGCAACTCCTTTTTGTTCAATCTGGA
GAGAGTGTTTTGATAACGGGGTAACACCACATCTCTTCAAAGACAGTCAT
ATCATTCCTATTTATAAAGGTGGGTTACCAAGGTGAAGCCCAAAATTATC
GGCCAGTGTCACTGACCTCGCACATAATGAAAACCTTTGAAAAGATTGTG
cgaaaaaacattgttaattATCTAGAAGAgaataacatttttaatgactc
cCAACATGGCTTTCGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNACAGAAGCAGTGATGTTATGATAACGT
TATGGAAATCCTTAGTTCTCCCTCACCTcgactactgttctcagctttGG
TCACCAAACAGCATCCACCAAATTGAGCAGATTGAATCCGTACAAAAGAA
cttcttcaataaaatcaaaggccTTAGTGCTTTCAATCATTGGGAACAAT
TGAAAATGTATTCTCTACAAAGGAGGAGGGAGAGATACAGATTTATTTAT
ATTTGGTCGATACTAGAGGGTatagtaccaaatttcagccacactGAGGG
TGATGGCACTGTAAAAGGGGGTGTCTCGTCTTCAACTACAAGCCGTCATG
GTCGAAAATGCCAACTACGAACAATCGAACGAAGTAGCTTTCGCAAATTT
ATTTGTGAGAGTTTAGCTGTACAGGGTCCAAAACTCTTCAACAGTATTCC
CTCTGACATACGAAATATCACTGGCTGTTCAAAAGATTCATTCAAGAAAC
AACTCAATAAATATCTGTGCTCTATACCCGACGAACCTCACACTACGTCG
CGACAAACAAGATTGGCTGAATCACATGCtcttttcgatcaaattataCG
TGTTGGGCTCAACAAGCTGGACAGATgaatatcatcaaatcaaactgaag
tatactgaagtaagttgttttggagaacggcGATGGCCTAttgacagtat
agacctaactcttcatacaaaaattacggtaAACATAATATagttggact
ttgtaccctacaCTGCATGCAAGCACTAAAGTCTAAcaaaagcgggacaa
aaattggttttttgaagtttgcaaaaaaacgccacatggaagatctttca
aaatcagtatagtcatctggggtaattacAGGATTATTTTGACTAATTTG
GGCATTACTCTGAATGTATTAATCTTAGAGATCTgatcttttattttatt
catcAAAGTATGACCTTTACACAAgatgacaaagaaaatttttgcccTCT
AAACGTCCTAAATAAGTGATTTCTTGCATATCCATAATAGTAGCCTAAAG
ATTCTAACTTGattatgaaaaaacaaccttaaTTTGAGATGTTTTAGAGG
TGTTTAATGTGAATGTTAATGAGAATCCTTATCTTTTGGTAAAAGCAATA
CttttattttgacttaaaataaACTAATCTCATTTCCATATCGTTGaagg
taaattttgaaataaggacTTTAAAGTTTCATTGAAACTAAACTATACTT
TCTATCACCACAACCCATTTTTGATGTATCAAATAATTTGCTAAATTAGC
AATAAATCATAAAATTGAAAACGATAGTAAACAAAGAAATGTATCTTATT
TACACCTATTTACAGCTGAAATATAAACAGAAATAAACAAAGGTCAGTTT
TTGTATCGTCATTTCTCTATCTTGCATAGTTTACTTTTCACATATTTTTC
TTAAcaaaattgagtttgaaaacTCAATTCGAAATTGAGTTTTTGCCACC
GAATAACGttggtaaaaaagtgcttggaaaTTACCCTGCCCACAttttgg
ggtaattacgggacacccTCAGGAAAATATGGGACAGGTATAAAATGCTA
TTGAAAAATCCAGATATCTTTCAAAAAGGTCATGATATTTGAGGTTTTGC
ATCCACTTGATGACTTCAAATCCAAGTGCTATCATTTAAaggattttcaa
taaaattagtGACAGTGTCCCATTTTTACCCCAGCTTTTTCCCATTTGGG
GGTAATAACGAGACACTTCAATCAGTAATATTTGTATAGAGAAATCTAGA
CTAACTGAAGTATATTTAGATACAAACCTTCGCAGGTTTTGAAAGACTTA
Gagtgtaccgtcaactgctctaacttgggactatctgacaaaacatggga
cggcaattcggccaccatttcaccgaacctccaaagtaatttgttaatcc
catcaggagataggcggttaggcggcgggcgtttttttattctccaatca
gcgtccggtcatttcaaatgaaaacaaaaaagttaaacagtgcgcgctat
cagtgaaagttattgtgacatgttatgacagaaagtatgattgatgaact
tggtggagttatcaaaacaaatttgtttcaaagagatttaacagtaagtg
aaaatacaggccagatatcaacagtcccatgtttcgaccagtCGTCCCAA
GTTAGGGCAGTTGGCGGTAGTTATGATTCCATTAAACtagaaaatcaagt
ttgtaGTTTTCTTATTAAACTTTAGTGTCCCATAATTACCCCAAGATTAA
GATTTGACTATGGGGCAAATATGGGACACACTTTTTAGAGATGAGCTGCC
TTGTTTGATAATGAGACTATCAGGATTTCAAACCATTATCTTGATATCAg
aattcagtcaaaatataGTCAAAGTGATTGCAGCACTTCCTGACACTAAA
GCTTGAAAAGTTCCCAGATGACCCCAAATGACTattatgtgaatagagca
gtcaTAGTGGGCAGAGGGGTATCAAGCCCCTCCCTTAAAAATGGCACCCC
CCCCTCTTTTAGCTCAACCCccctcttaaaaatgaaaattcctcaacccc
ctctttttattcaacccccctctttttcCCAGGTTTAAGTTCAACCCCCC
TCTTTCGACCTTTTACGCACAAACTCTTACAATCTCTAACTATATTCCAA
GGATATTAAACTGAAGAATACAATAATATGAATCTGATGgcagaaattac
tttttaacaGATACAGTAAGATATTTAAGATACCAATAATGTTAGCTAGT
GTAGTGCTTCATTCAAATGAATGGAAATATAATAattgttgagaaattta
aaaatgaatggaaaacactcttttgcaaattgccaaatcttccaagcccc
ccccttaaaaattaacccccctctttttgtccaagccaccccttttattt
gaaattttcacaaccCCCCCCCTTCTTTTTAATTCAGTAAAATTCTCAAT
CCCCCCCTTTTTAAAGGGGGGGGGTGCCCGCTATGGCAGtctaaaaaata
caactttattatttttcctttttttttgcaaaaattttatgaatgaaaat
aaaggtataATGATAATCGAATACTATCCAGCTGATGATCTGCGGCACTA
TCATAAAGCTAGAATCACTTCGCCtactctttgcttgagaaaatgaagaa
ttcaagtttttcacccgcgtaGAAGCTCGCAGACATTCTGTGAGCGTTCT
TGGCTCAATCCTCAGAccacgctaaaaatggtagacttagcgctgtgata
gatcatttcgatggaagttgttggaatgtttacaaggctcttgacagaaa
atcctttgttttaatTACCAATGATGACAGTACAGAGAATTAATTTTTGC
CAATGACAAATTTGACCATATTTCCTGAGAATTGACTTTCGGGAATGAGG
CAAATCAAAGAAAAGACAACTTTTAATTAATGTTCATAAATTTCTTCCAC
TACTCCTTCTAGAAACAAACACAAACTAGAAATATTAACATAATCTGTAA
AAGAGTTCATTTTTCCTCCTGTAAgatttgaaaattctgaaaaatgaatt
ttaagtaaaTTACAGGAATTAACTTTCGCCAATGACAAGTTTTGCGAATG
GGACCTTCAGCATTTTTTGCAGAACTTCATTTTCGCGGTTTGGCCGAAAA
ACTGCAAActcgcaaaagtttcttctGCAAAGGTTTCTTCCTTTAAAGAC
GTAGGGTTTTTGATTTTGACCCCACTTTAGAGAAATAGTATTTTTAGGAC
AATTTGGCACAGAGACCACGCTATAGAGACATTTTATATTCTCTGGacca
atttttgccaaatttgacaCTTTTGAATGGTCCTGCTATATGAATTGAGC
aaacatttttagaaatttgactAAATGTAATTAATTGGACTACAAAAGtt
ttctttatttgaaaatttattaagtcaaaaaatttggaaaaaagttatga
aaaatttgtcaaaatcacctaattctttttctttgtttcagatGTGGCTT
TGGGATTACTTTACTGGTGCATTGAAGTACCTCGGTAAGTTGTTATTTTG
AACTAATACTAATTTTTAGCTGATTTAGAATGTACTAGGTGTCCCAAAAA
AATTCCTATGTCAGAACATGACGTTTCTCTCTTTAAACGAAACGCAGTAG
TTAACACTTAAATTGTTACAATGAAGCAGAAACGCAATAAACCTAGTAAC
AAAATTGAAACATCAATTATGTAATAAAACACTTTTATATTACATTGCAT
TATATTTAAACACATTAATACTAATTTTTGTTTAcacaaatcttttttat
ttttagtcgTGTTCTGACACAGTATTTGTTTTTGGGACATCCTGTAGAAA
TCACCCTTTAGTATCGAGTGTCAAGAATGCAATTTATTTCTTCATTTCAT
TTTGCATAGAGTTTACCCCAATAATCTCTCTTTTTTTTACAGGTTTGATG
AATAAAAATGGAAAACTTGTCTTCCTTGGACTTGACAATGCTGGTAAAAC
AACGCTATTACATATGTTAAAAGACAACAGAATGGGACAGCACGTCCCAA
CTCTACATCCCAGTAAGTACCTTAGAGGATTTGGTAACTGATTTTCACAG
AGACTGGATCTCTGGTCTTCCacaaaaaaatttagttttttgttgaaaat
ccaTGCCtcaaccgcaaaaattaattcactGAATATATTAGTTGTTCCTG
CCTAATTCACTTCTGCTTTCTGTTCTTCTACAAGGTGTTATTGTTATCAA
GATACGTTTGATCAAAATGTACTTTCTCCTTTCAGCTGCTGAGGAATTAA
CAATGGGTGGTATgaaattcaaaacattcgatttgggAGGTCACAAACAA
GGTAAGCTTTTTATGTATACGCATTAGGCCctagaaaatgttcgtacatg
aggggggtggaggatatagtgtccggatataatgaaaaatctacaaaatc
tgTCTTATCCAGGGGTTTTGCTCAGTTTGAGagtaatttttaatgtttta
atgtccaggggtcaactaatgcttgtctGGGAGGTTAGACCTACTGTCCG
GGGGGTTAGACCTACTGTCCGGGGGGTTAAAAGTCAcaaaacgggggggg
gggacatttccaaaaaatgttatatgctccaccccccatgttaaattttt
tctggaaaagcccattggtTGTTTGAtgactatcttttaaaaaattatct
CAACCGTTTGGCAAGCTCACAAACTCTTTTAAATCAGAACAGCTTATATG
GGTTGCTATTATTAGCATCAAATAAAAACGTTTTCAAATCTTAAAGGCTT
GGGAACACGAAAAGTCCAaaggacaaaatcagcgtgtttTTTGGTTGTCC
GTACACAGACgtagtatctacggctaatttcaaaattcattgtcgtagag
ggtctgttgtcatgtcttttctcatttgagatttttcaaaccaatcgctg
cgatggagtgttggtgagagaggagAGACGACGAAAGAAGTGTtgttatt
tataaatcatacttcatcgtagagatctccgtacgggaattttctTATCA
AACAGATAATGCGCACatagtgtactacgaagcgataaacgtgagataca
ctctggtacagagtagtcttttgggtatttccctcactttttgttcCATG
AAAAAAAGAACCATGGGACaagcacttttttcttgtgttgttgGGATGGA
GCatattgcattgcaccaacgcgaaaaaaaattctcgtgTCCCCAACCTT
AAGTaaacttaaaaacttttttcactttctttagCACGAAGGGTATGGAA
ACAATATTTCCCTGCTGTCGACGGAATTGTCTTCATTATTGACGTCGCTG
ATCCAGAACGATTACCAGAATCCAAAGCCGAATTCGACGTAAGTGCAGTT
CATTAGAATTATAGGGAAAATGCCCTTtcaaaaaccttcaaaaatcTTAT
CCTAAATATCAAGCATGTAGAGTTGGAATAATAAGAATGTTTTGGATAGA
AAATTGAATTCCTCTATATTATTTATCTTCAGTCATAATAGAAGTTAGTA
GTAAGTAAGATAGACTTTCTAAACTGCAGTGgattctctttaactcgaac
actatggagaacacaaatttgttccagTTATATGGAGTAACGTTTAATTA
GCATTGTTAACTAAATGgactagaaaacttgttcgagttaaggagacatt
cgagttatagaggtttcaATTAAAGAGACCCTTCTGCATTTTCAACTTTA
GTACGTATTTGTTTCGTTCacattttcgttatttttcttataCGTGAGCA
TACTCTTTGAGTTTTCTAACAATgcctctatttttctttttccagagTTT
ACTAGCGGACGAACAACTTGCAAACGCACCCATTTTGATATTAGGAAATA
AAATCGACAAACCAGAAGCCGTCGGCGAAGATTACATCAGACAATATTTC
GGTTTATTCGGCCTCACTTCAGGAAAGGTAAGATAATTTAAGGTCAAACT
TTTATCGACAACTGTAAGCCTTTATTTTAATTGAATAGATACACTTAGAT
ACTTGTGttatcttttatttttgaattctcTCATCCAAAATTGTTAGTTT
CTACAAAGGAAAGAACGTTGGCTGAAAAGGGGAAGGATTGGAAAGTCTTT
TGGGGTTAGAGGGGATGCCAAGAAAGTTAGATCGTCTAATAAGGGGTATA
AGAGCTTTTTCTTACCCGAACTTTACTTTAATAACAATAACAATGATAAT
GCTGAGAATTTCATTCTACGTCTACTTCTTACTTTTGCAGAACGTTGCAG
CGAAAGACATGAACGCTCGTCCTATCGAATTATTTATGGTTTCTGTTCTA
AAACGACAAGGTTACGGTGAAGGTATGTAATACTATTCCCCTTTGAAAAA
TAGGTTTTCTTATGCAAGTaactttgaattgaattgaggGTGCTTTACAT
ACAGCAATTCTGTCTCTGAAACTCGTGCAAGAATATTGGGTCAACGCATC
gacttttcaaaagaattgctCAATATTTCTGTCTTGGGCGACAAAATTAG
CACATCTAAGAGGACACTACCTTCAGCCTTTTTCCAGCGTTTTTATACAT
ATTCCATTTTTCGTGAAAAACATCTGGAAGTTGAAGAATTAAATCACTTT
AAAATCACTCCAATTTTTTCTTACCTTTAGGTTTCCGCTGGTTATCACAA
TTCATAAATTAATTTGCCTTTCCAAAGGATGATAGATAATCATTAGAGCC
AACAGATCCAATAGTCGAGAGGACCTGTTTAAAACCCAACCATCTCGAGA
GGGAGTTTAAAGTCATTCATAATGAAACAGTTGATGAAGGGTGACCGAAA
CTTAGAAAGCCATGCAATTCAGTACAATACAACAGTGGACATTGTTTTAA
TTAGGTATTGAAAGAGCGAGACAATGAATGTGAATGTGAATTGTCGCTTC
cgttttgaatattttatttgGAGATGTCCCAAAGAATTATTTCGACCGTT
CGTTTTTATAGATAGTTTTTAAAGttagtctttttttttgttcgtctTTA
TTGAATTGCATCTTTTGATCTTTGGTTTAGTTCATCCCAacttaaacttt
ttttaaatttttagcgaATATTTTTCTATGCAGGACAGTGTCTCGTATCT
ATGTTGGTTTCGATTTTTTATTCCATGTTGAAAAACATTCTTTCCTCAAA
AACCTTCTTCTCTTCACTTTTAGCTTAGGTCTTTATAAAATTGTTTACTC
TGTTCTATATATCTATTTGATACTTTAGAATATATAGTAAACCTtatatt
ttttggtattttttttcgcTTTTGACGTTAACAAATTTTATGAAAGCTCG
GAAAAATTGTAATATCTACGAATTTGTATACAAAGATAAATTAATCTACA
ATCGAATACTATAGTCTCTTTGTTTGGCATTTAGCTTaatatactttagg
cgtacaaactttcgcgagcagaaactttcgcgaggacgaaaaatcgcgaa
attcacgacatttactttcgcgaatttaacggaaaaataattttcgcgag

Coding sequence (CDS) from alignment at scaffold_2:48178..61377+

>TCONS_00051164 ID=TCONS_00051164|Name=TCONS_00051164|organism=Clytia hemisphaerica|type=CDS|length=5712bp|location=Sequence derived from alignment at scaffold_2:48178..61377+ (Clytia hemisphaerica)
atgtgttGTCTCGAGCcagtctttcaaaaaaaaaatcacaacaagaaaaa
tcaaaattgggTCGAAGCAGGACTCTGTACCCTTCATCAAAATTTGGACT
TGTCTGGATATTCTCTCGTAACTTCAAGAACAAAGatGTGGCTTTGGGAT
TACTTTACTGGTGCATTGAAGTACCTCGGTTTGATGAATAAAAATGGAAA
ACTTGTCTTCCTTGGACTTGACAATGCTGGTAAAACAACGCTATTACATA
TGTTAAAAGACAACAGAATGGGACAGCACGTCCCAACTCTACATCCCACT
GCTGAGGAATTAACAATGGGTGGTATgaaattcaaaacattcgatttggg
AGGTCACAAACAAGCACGAAGGGTATGGAAACAATATTTCCCTGCTGTCG
ACGGAATTGTCTTCATTATTGACGTCGCTGATCCAGAACGATTACCAGAA
TCCAAAGCCGAATTCGACagTTTACTAGCGGACGAACAACTTGCAAACGC
ACCCATTTTGATATTAGGAAATAAAATCGACAAACCAGAAGCCGTCGGCG
AAGATTACATCAGACAATATTTCGGTTTATTCGGCCTCACTTCAGGAAAG
AACGTTGCAGCGAAAGACATGAACGCTCGTCCTATCGAATTATTTATGGT
TTCTGTTCTAAAACGACAAGGTTACGGTGAAGGTTTCCGCTGGTTATCAC
AATTCATAAATTAAatgtgttGTCTCGAGCcagtctttcaaaaaaaaaat
cacaacaagaaaaatcaaaattgggTCGAAGCAGGACTCTGTACCCTTCA
TCAAAATTTGGACTTGTCTGGATATTCTCTCGTAACTTCAAGAACAAAGa
tGTGGCTTTGGGATTACTTTACTGGTGCATTGAAGTACCTCGGTTTGATG
AATAAAAATGGAAAACTTGTCTTCCTTGGACTTGACAATGCTGGTAAAAC
AACGCTATTACATATGTTAAAAGACAACAGAATGGGACAGCACGTCCCAA
CTCTACATCCCACTGCTGAGGAATTAACAATGGGTGGTATgaaattcaaa
acattcgatttgggAGGTCACAAACAAGCACGAAGGGTATGGAAACAATA
TTTCCCTGCTGTCGACGGAATTGTCTTCATTATTGACGTCGCTGATCCAG
AACGATTACCAGAATCCAAAGCCGAATTCGACagTTTACTAGCGGACGAA
CAACTTGCAAACGCACCCATTTTGATATTAGGAAATAAAATCGACAAACC
AGAAGCCGTCGGCGAAGATTACATCAGACAATATTTCGGTTTATTCGGCC
TCACTTCAGGAAAGAACGTTGCAGCGAAAGACATGAACGCTCGTCCTATC
GAATTATTTATGGTTTCTGTTCTAAAACGACAAGGTTACGGTGAAGGTTT
CCGCTGGTTATCACAATTCATAAATTAAatgtgttGTCTCGAGCcagtct
ttcaaaaaaaaaatcacaacaagaaaaatcaaaattgggTCGAAGCAGGA
CTCTGTACCCTTCATCAAAATTTGGACTTGTCTGGATATTCTCTCGTAAC
TTCAAGAACAAAGatGTGGCTTTGGGATTACTTTACTGGTGCATTGAAGT
ACCTCGGTTTGATGAATAAAAATGGAAAACTTGTCTTCCTTGGACTTGAC
AATGCTGGTAAAACAACGCTATTACATATGTTAAAAGACAACAGAATGGG
ACAGCACGTCCCAACTCTACATCCCACTGCTGAGGAATTAACAATGGGTG
GTATgaaattcaaaacattcgatttgggAGGTCACAAACAAGCACGAAGG
GTATGGAAACAATATTTCCCTGCTGTCGACGGAATTGTCTTCATTATTGA
CGTCGCTGATCCAGAACGATTACCAGAATCCAAAGCCGAATTCGACagTT
TACTAGCGGACGAACAACTTGCAAACGCACCCATTTTGATATTAGGAAAT
AAAATCGACAAACCAGAAGCCGTCGGCGAAGATTACATCAGACAATATTT
CGGTTTATTCGGCCTCACTTCAGGAAAGAACGTTGCAGCGAAAGACATGA
ACGCTCGTCCTATCGAATTATTTATGGTTTCTGTTCTAAAACGACAAGGT
TACGGTGAAGGTTTCCGCTGGTTATCACAATTCATAAATTAAatgtgttG
TCTCGAGCcagtctttcaaaaaaaaaatcacaacaagaaaaatcaaaatt
gggTCGAAGCAGGACTCTGTACCCTTCATCAAAATTTGGACTTGTCTGGA
TATTCTCTCGTAACTTCAAGAACAAAGatGTGGCTTTGGGATTACTTTAC
TGGTGCATTGAAGTACCTCGGTTTGATGAATAAAAATGGAAAACTTGTCT
TCCTTGGACTTGACAATGCTGGTAAAACAACGCTATTACATATGTTAAAA
GACAACAGAATGGGACAGCACGTCCCAACTCTACATCCCACTGCTGAGGA
ATTAACAATGGGTGGTATgaaattcaaaacattcgatttgggAGGTCACA
AACAAGCACGAAGGGTATGGAAACAATATTTCCCTGCTGTCGACGGAATT
GTCTTCATTATTGACGTCGCTGATCCAGAACGATTACCAGAATCCAAAGC
CGAATTCGACagTTTACTAGCGGACGAACAACTTGCAAACGCACCCATTT
TGATATTAGGAAATAAAATCGACAAACCAGAAGCCGTCGGCGAAGATTAC
ATCAGACAATATTTCGGTTTATTCGGCCTCACTTCAGGAAAGAACGTTGC
AGCGAAAGACATGAACGCTCGTCCTATCGAATTATTTATGGTTTCTGTTC
TAAAACGACAAGGTTACGGTGAAGGTTTCCGCTGGTTATCACAATTCATA
AATTAAatgtgttGTCTCGAGCcagtctttcaaaaaaaaaatcacaacaa
gaaaaatcaaaattgggTCGAAGCAGGACTCTGTACCCTTCATCAAAATT
TGGACTTGTCTGGATATTCTCTCGTAACTTCAAGAACAAAGatGTGGCTT
TGGGATTACTTTACTGGTGCATTGAAGTACCTCGGTTTGATGAATAAAAA
TGGAAAACTTGTCTTCCTTGGACTTGACAATGCTGGTAAAACAACGCTAT
TACATATGTTAAAAGACAACAGAATGGGACAGCACGTCCCAACTCTACAT
CCCACTGCTGAGGAATTAACAATGGGTGGTATgaaattcaaaacattcga
tttgggAGGTCACAAACAAGCACGAAGGGTATGGAAACAATATTTCCCTG
CTGTCGACGGAATTGTCTTCATTATTGACGTCGCTGATCCAGAACGATTA
CCAGAATCCAAAGCCGAATTCGACagTTTACTAGCGGACGAACAACTTGC
AAACGCACCCATTTTGATATTAGGAAATAAAATCGACAAACCAGAAGCCG
TCGGCGAAGATTACATCAGACAATATTTCGGTTTATTCGGCCTCACTTCA
GGAAAGAACGTTGCAGCGAAAGACATGAACGCTCGTCCTATCGAATTATT
TATGGTTTCTGTTCTAAAACGACAAGGTTACGGTGAAGGTTTCCGCTGGT
TATCACAATTCATAAATTAAatgtgttGTCTCGAGCcagtctttcaaaaa
aaaaatcacaacaagaaaaatcaaaattgggTCGAAGCAGGACTCTGTAC
CCTTCATCAAAATTTGGACTTGTCTGGATATTCTCTCGTAACTTCAAGAA
CAAAGatGTGGCTTTGGGATTACTTTACTGGTGCATTGAAGTACCTCGGT
TTGATGAATAAAAATGGAAAACTTGTCTTCCTTGGACTTGACAATGCTGG
TAAAACAACGCTATTACATATGTTAAAAGACAACAGAATGGGACAGCACG
TCCCAACTCTACATCCCACTGCTGAGGAATTAACAATGGGTGGTATgaaa
ttcaaaacattcgatttgggAGGTCACAAACAAGCACGAAGGGTATGGAA
ACAATATTTCCCTGCTGTCGACGGAATTGTCTTCATTATTGACGTCGCTG
ATCCAGAACGATTACCAGAATCCAAAGCCGAATTCGACagTTTACTAGCG
GACGAACAACTTGCAAACGCACCCATTTTGATATTAGGAAATAAAATCGA
CAAACCAGAAGCCGTCGGCGAAGATTACATCAGACAATATTTCGGTTTAT
TCGGCCTCACTTCAGGAAAGAACGTTGCAGCGAAAGACATGAACGCTCGT
CCTATCGAATTATTTATGGTTTCTGTTCTAAAACGACAAGGTTACGGTGA
AGGTTTCCGCTGGTTATCACAATTCATAAATTAAatgtgttGTCTCGAGC
cagtctttcaaaaaaaaaatcacaacaagaaaaatcaaaattgggTCGAA
GCAGGACTCTGTACCCTTCATCAAAATTTGGACTTGTCTGGATATTCTCT
CGTAACTTCAAGAACAAAGatGTGGCTTTGGGATTACTTTACTGGTGCAT
TGAAGTACCTCGGTTTGATGAATAAAAATGGAAAACTTGTCTTCCTTGGA
CTTGACAATGCTGGTAAAACAACGCTATTACATATGTTAAAAGACAACAG
AATGGGACAGCACGTCCCAACTCTACATCCCACTGCTGAGGAATTAACAA
TGGGTGGTATgaaattcaaaacattcgatttgggAGGTCACAAACAAGCA
CGAAGGGTATGGAAACAATATTTCCCTGCTGTCGACGGAATTGTCTTCAT
TATTGACGTCGCTGATCCAGAACGATTACCAGAATCCAAAGCCGAATTCG
ACagTTTACTAGCGGACGAACAACTTGCAAACGCACCCATTTTGATATTA
GGAAATAAAATCGACAAACCAGAAGCCGTCGGCGAAGATTACATCAGACA
ATATTTCGGTTTATTCGGCCTCACTTCAGGAAAGAACGTTGCAGCGAAAG
ACATGAACGCTCGTCCTATCGAATTATTTATGGTTTCTGTTCTAAAACGA
CAAGGTTACGGTGAAGGTTTCCGCTGGTTATCACAATTCATAAATTAAat
gtgttGTCTCGAGCcagtctttcaaaaaaaaaatcacaacaagaaaaatc
aaaattgggTCGAAGCAGGACTCTGTACCCTTCATCAAAATTTGGACTTG
TCTGGATATTCTCTCGTAACTTCAAGAACAAAGatGTGGCTTTGGGATTA
CTTTACTGGTGCATTGAAGTACCTCGGTTTGATGAATAAAAATGGAAAAC
TTGTCTTCCTTGGACTTGACAATGCTGGTAAAACAACGCTATTACATATG
TTAAAAGACAACAGAATGGGACAGCACGTCCCAACTCTACATCCCACTGC
TGAGGAATTAACAATGGGTGGTATgaaattcaaaacattcgatttgggAG
GTCACAAACAAGCACGAAGGGTATGGAAACAATATTTCCCTGCTGTCGAC
GGAATTGTCTTCATTATTGACGTCGCTGATCCAGAACGATTACCAGAATC
CAAAGCCGAATTCGACagTTTACTAGCGGACGAACAACTTGCAAACGCAC
CCATTTTGATATTAGGAAATAAAATCGACAAACCAGAAGCCGTCGGCGAA
GATTACATCAGACAATATTTCGGTTTATTCGGCCTCACTTCAGGAAAGAA
CGTTGCAGCGAAAGACATGAACGCTCGTCCTATCGAATTATTTATGGTTT
CTGTTCTAAAACGACAAGGTTACGGTGAAGGTTTCCGCTGGTTATCACAA
TTCATAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032432XLOC_032432Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051164-exon-scaffold_2-1491911889:48178..48441TCONS_00051164-exon-scaffold_2-1491911889:48178..48441Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1510915933:48178..48441TCONS_00051164-exon-scaffold_2-1510915933:48178..48441Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1575043694:48178..48441TCONS_00051164-exon-scaffold_2-1575043694:48178..48441Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1491911889:57319..57361TCONS_00051164-exon-scaffold_2-1491911889:57319..57361Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1510915933:57319..57361TCONS_00051164-exon-scaffold_2-1510915933:57319..57361Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1575043694:57319..57361TCONS_00051164-exon-scaffold_2-1575043694:57319..57361Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1491911889:57770..57889TCONS_00051164-exon-scaffold_2-1491911889:57770..57889Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1510915933:57770..57889TCONS_00051164-exon-scaffold_2-1510915933:57770..57889Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1575043694:57770..57889TCONS_00051164-exon-scaffold_2-1575043694:57770..57889Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1491911889:58113..58178TCONS_00051164-exon-scaffold_2-1491911889:58113..58178Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1510915933:58113..58178TCONS_00051164-exon-scaffold_2-1510915933:58113..58178Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1575043694:58113..58178TCONS_00051164-exon-scaffold_2-1575043694:58113..58178Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1491911889:59112..59215TCONS_00051164-exon-scaffold_2-1491911889:59112..59215Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1510915933:59112..59215TCONS_00051164-exon-scaffold_2-1510915933:59112..59215Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1575043694:59112..59215TCONS_00051164-exon-scaffold_2-1575043694:59112..59215Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1491911889:59673..59804TCONS_00051164-exon-scaffold_2-1491911889:59673..59804Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1510915933:59673..59804TCONS_00051164-exon-scaffold_2-1510915933:59673..59804Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1575043694:59673..59804TCONS_00051164-exon-scaffold_2-1575043694:59673..59804Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1491911889:60118..60199TCONS_00051164-exon-scaffold_2-1491911889:60118..60199Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1510915933:60118..60199TCONS_00051164-exon-scaffold_2-1510915933:60118..60199Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1575043694:60118..60199TCONS_00051164-exon-scaffold_2-1575043694:60118..60199Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1491911889:60508..61377TCONS_00051164-exon-scaffold_2-1491911889:60508..61377Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1510915933:60508..61377TCONS_00051164-exon-scaffold_2-1510915933:60508..61377Clytia hemisphaericaexon
TCONS_00051164-exon-scaffold_2-1575043694:60508..61377TCONS_00051164-exon-scaffold_2-1575043694:60508..61377Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051164-proteinTCONS_00051164-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:48178..61377 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
181.781	178.934	250.655	251.124	130.383	103.316	217.301	226.448	232.325	188.262	224.587	297.374	233.543	228.374	239.69	231.191	208.813	243.936	159.587	166.521	258.179	243.5	228.608	230.347	173.803	178.157	222.5	259.831	306.564	290.611
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR006687Small_GTPase_SAR1
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00051164 vs. Swiss-Prot (Human)
Match: SAR1B (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 1.926e-94
Identity = 131/192 (68.23%), Postives = 164/192 (85.42%), Query Frame = 1 
Query:  268 WLWDYFTGALKYLGLMNKNGKLVFLGLDNAGKTTLLHMLKDNRMGQHVPTLHPTAEELTMGGMKFKTFDLGGHKQARRVWKQYFPAVDGIVFIIDVADPERLPESKAEFDSLLADEQLANAPILILGNKIDKPEAVGEDYIRQYFGLFGLTSGK-NVAAKDMNARPIELFMVSVLKRQGYGEGFRWLSQFIN 840
            W++  F+  L++LGL  K GKLVFLGLDNAGKTTLLHMLKD+R+GQHVPTLHPT+EELT+ GM F TFDLGGH QARRVWK Y PA++GIVF++D AD ERL ESK E DSL+ DE +AN PILILGNKID+PEA+ E+ +R+ FGL+G T+GK +++ K++NARP+E+FM SVLKRQGYGEGFRW++Q+I+
Sbjct:    7 WIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198
The following BLAST results are available for this feature:
BLAST of TCONS_00051164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SAR1B1.926e-9468.23GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
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