TCONS_00051279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051279
Unique NameTCONS_00051279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051279 ID=TCONS_00051279|Name=TCONS_00051279|organism=Clytia hemisphaerica|type=transcript|length=1574bp
NNCGaccaaaaaatgattttctaatCAGGgaaaagtttacaaaaatacTG
AACGGCTCGCTGATAGGTATGAAAGACATTTTTACTTACCCCTTAGCGTG
CATACGACCCATCTTGAGTTCTTGTTGGCTTGAAACGAAAGAACGATGAA
ACGTGCAAAGATGTGAAATCCTTCAAATAATGTAGCCGTGGTCATGCTGA
GAAATTCCATCGCCCTGTTCTCCTTCTTTGTTATTCTTTGGTAAGACTGA
CCACTTCGACATTCCATTTCTCTAGAATAAAAAGTTTGTCTTTCTTATCA
TGGTAGACGGGCTAACCTGTTTcgaagattttcgaaaaagctACCGCGCG
GGTCGTTGATTGGTAAATTCAATGTACACTCAGGTGATCGCATGAATAAG
CGAAATTGAAAGCGGGAGTCAGGAGTTTATTAAAAAAACCTGCACTCTTC
CAAAAAACacaatcaaaattttatcataaaCACTTTTCAGTAGTGTTAAA
AGATGGGAGAGAGATACAGCTTCAGTTTGACAACTTTCAGCCCTTCTGGA
AAGCTTGTACAAATCGAATATGCTTTAGCTGCTGTAGCTGCTGGTGGTCC
ATCAGTTGGATTAAAAGCCGTGAATGGTTCAGTTATTGCTGCagagaaga
aacaaaaatcaatattatacGATGAAAAGACAGTATCAAAGATTGAGATG
ATAACAAAGCATATAGGAATGGTATACAGTGGGATGGGGCCAGACTTCAG
GCTGTTAGTCTCAGAAGCACGTCGAATTGCAGTCAATTACAAACTACAGT
ACGGAGAATCCATCCCAACCTCACAACTTGTACAAAAAGTAGCTTCTGTC
ATGCAAGAATATACACAATCTGGGGGTGTCCGTCCTTTCGGTGTATCATT
GTTAGTATGCGGATTCGATGAAGAAACACCATCTCTTTTTCAATGTGATC
CTTCCGGTGCTTACTTCGCCTGGAAAGCCACCGCTATCGGCAAAAACTAC
GTCAACGGAAaaactttcttagaaaaaagATACAACGATACGCTGGAATT
AGAAGATGCCATTCACACAGCTATCTTGACTCTCAAAGAAGGTTTCGAAG
GACAAATGAACGAAGATAATATTGAAGTGGGAATATGTGATAAAAATGGT
TTCCGTAAGCTTACACCTAGTGAAATAAAAGACTATTTAGCATCCATTCT
TTCTTAATCTTTATTGGTGTATCGACCATTCTTcatactaaaataccaag
tcaACATCGAATACTGGAATCAGGATCCTGTCAGCCGTATGGATAAtcga
tttcatttttcaaagaacGACGATTCAGAAATTCGTAgcattgtttttta
tattttcaaatatttaacgTTAAAAATACATTGAAAGTGCGAATTATAAT
TGTTTTGTGTTTATTTCTCTACTGATTCTAATAAAATCGTGAATGAtgaa
tgtttcaatattttaagcAGTCGGCCCCTAAAATGAAGGTCAAATTTGAT
TAAATTGACTCTAGCATCGCACCAATCACCGTCTGTTACTATTTTTGAAT
GATTTGGTTTTTTCCTTTCCAaag
Run BLAST on NCBI

protein sequence of TCONS_00051279-protein

>TCONS_00051279-protein ID=TCONS_00051279-protein|Name=TCONS_00051279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MGERYSFSLTTFSPSGKLVQIEYALAAVAAGGPSVGLKAVNGSVIAAEKK
QKSILYDEKTVSKIEMITKHIGMVYSGMGPDFRLLVSEARRIAVNYKLQY
GESIPTSQLVQKVASVMQEYTQSGGVRPFGVSLLVCGFDEETPSLFQCDP
SGAYFAWKATAIGKNYVNGKTFLEKRYNDTLELEDAIHTAILTLKEGFEG
QMNEDNIEVGICDKNGFRKLTPSEIKDYLASILS
Run BLAST on NCBI

transcript from alignment at scaffold_200:30338..44889+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051279 ID=TCONS_00051279|Name=TCONS_00051279|organism=Clytia hemisphaerica|type=transcript|length=14552bp|location=Sequence derived from alignment at scaffold_200:30338..44889+ (Clytia hemisphaerica)
NNCGaccaaaaaatgattttctaatCAGGgaaaagtttacaaaaatacTG
AACGGCTCGCTGATAGGTATGAAAGACATTTTTACTTACCCCTTAGCGTG
CATACGACCCATCTTGAGTTCTTGTTGGCTTGAAACGAAAGAACGATGAA
ACGTGCAAAGATGTGAAATCCTTCAAATAATGTAGCCGTGGTCATGCTGA
GAAATTCCATCGCCCTGTTCTCCTTCTTTGTTATTCTTTGGTAAGACTGA
CCACTTCGACATTCCATTTCTCTAGAATAAAAAGTTTGTCTTTCTTATCA
TGGTAGACGGGCTAACCTGTTTcgaagattttcgaaaaagctACCGCGCG
GGTCGTTGATTGGTAAATTCAATGTACACTCAGGTGATCGCATGAATAAG
CGAAATTGAAAGCGGGAGTCAGGAGTTTATTAAAAAAACCTGCACTCTTC
CAAAAAACacaatcaaaattttatcataaaCACTTTTCAGTAGTGTTAAA
AGATGGGAGAGAGATACAGCTTCAGTTTGACAACTTTCAGGTATGTTAAC
TAACTTACTTACTCACAGCATAATTCAAACCCTTTTCTGGAAGGAGGGGG
GATAacctaaaaatagaaaaaccagCCAGGAAGACGACCCCCACACTCAC
ATCACCCACTCACTGTATTGCCTGAACTTACTTCTCAGGCCACTTGGcga
ttttgaacttgaaaaagtgTTGAACATGACCCAAATCTTACCTATGGCGT
GCATGCTGAGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNgaataaaatgtaacttttatggcactttttagcct
gctaaaagactaataagtcaaaggacaaatgtttcaagccaatccaagaa
gtatttatccCTCTAAGCCATGAGGGACATTGAGGAAATTCTCAATTTCA
GGTCTTGATTTGCGAAaatttatgctcgcaaaaaagatttttccataaaa
tttgcgaaagtaaatgttgtgaattttgcaatttttcgtcCTCTTGAAAG
TTTCTGGTCtggaaagtttgtacgcctaaaagTAATCCCTGGAAAATCAC
ACATTAGTATAAAGTACAGAAATTAATTAAGTTTGGATTGTGTAAATCTA
CACCAATCAGTAATGTCTGTCTGCTgtaatcttcaaatttttccaattaT
CTTCGTTATTAAGAAATGAAACAAGTGCACTAATTACTACAGAGCTAATG
TAGTAAGCtaagaattttcattaaaacgCAAATGTGTTAAATCTGATAAG
ATTTCGTGGCACAAGGAAGATACAACGGCTGATACAAGAATTTATGCGGA
AATATTTTCCCGATCCCCCAAACATTCAAGTAATTCAGAATCGGTTGACC
aaactttaactttttttgtctTGAGAAACACCAAATTTTAAAGATCTTCT
CCACTTAGCCTGGAGCGACCAGTTATTGAGGAAGTCATTGAAATTAACTT
CAATTATCAGACTGAAACCAATAATGATTCAAAAAATCAAGCACTTTTGG
TGGACATCAAACATAAGTGTTGGACATTTTCAAAGATTATAATCAAAGCA
ATCAAATTTTACCTTGGATTTACCAGCTTGATAGAAATTCATTTTTGTGT
TCTTTACGTTCTGTTTTTAATTGCTTCATTGCCTTCAGTTTGGTCCAATT
GTTTCAATTGTGAATTCTGATTGAGCAAAATTATCTGGATTATATACGAT
ACTACAATCAGCATCATAATTGACCAGTTTTTAAGGAGGATGAAGGGAGC
CATCCAAAAAACCCTGATTGGAGGGGGAGGTTTTTTTGAAGTATTTATAT
TGAGATTGCTTCCCTGAAATATCTTTGTGTGTAATTGGAATGATGGTTGA
TTGACTGCTATTTTTTGCAAGTTCAgaaatgttttgtttcttcATCCCAA
TTGTATTTTTTCATTGATGCTCTATTCCCCATAAATGTATATTGCTTGTT
ATAATATGATAATATTGTTTTTTTACAGCCCTTCTGGAAAGCTTGTACAA
ATCGAATATGCTTTAGCTGCTGTAGCTGCTGGTGGTCCATCAGTTGGATT
AAAAGGTCTGTCATTCGTATAGGTTTACAAGAATTTATTAGGGGAGGGGG
TAGAATTTTGGCGATGATGATCGCCACTTCTTAATATAAAGGATAGTTCA
TATTCTTTAATTTAtcttttctttaaaacaatctgaattgaaaaatgaaa
aacatcaaGTAACATCTGGTTTGAGAtcgattttaaaatttgatttttct
tgattaTTCCTATTTgatctcattttttttattcagcCGTGAATGGTTCA
GTTATTGCTGCagagaagaaacaaaaatcaatattatacGATGAAAAGAC
AGTATCAAAGGTATTATTGCNTATTCAGCCGTGAATGGTTCAGTTATTGC
TGCagagaagaaacaaaaatcaatattatacGATGAAAAGACAGTATCAA
AGGTATTATTGCTTTTACTCCCTAGAAATTCATTCTAATAATTTTAAAGT
TCAAATGAAAATGTATGACTTTGCCCATGACTCCTGTGAATGATAACATG
CTAATCATTAGCGGACTTACCTAGAAGCCCGTTCCTGGCCAGTGATCTGA
TAAGGGGGCTTTTTTACTAGCCTTTTATGGACAGATCGAGTATTTAAAAG
ATTCCTCCTTTCTAGCACAATTAATTTTACATTTTGATAAAAGAGTGATA
TTCAGATATCAAATATTTTTGCCAATGGTATGTCCATATTTGTTGGATTT
CAACGGTAGGCAATGTCCAGTAAATCAcataaaaatgagaataaaaTTAC
ACTCAAGAACATAAAACGCTTATTAATGATCTCATTGTGCACTTTGTATT
TCAGATTGAGATGATAACAAAGCATATAGGAATGGTATACAGTGGGATGG
GGCCAGACTTCAGGTAAGATTatcaaaaaaccaaaagtatAAAGAATTGA
CTTCACCATTTCCTTGTTATTCCTTTTAATGGACCTACTTGGAGTtttta
acctgtgttcgtctgTTCATCTGTTCGTCcgtttgtctgttaccagcttt
tctcgggattgaatcataggaattttgtgatttttttgtacaaaggtGCA
GATTGGGGATTGCCAAAATGTGACCGAATGTGacctgagcccgattttcg
aaaacaaatttgGGCTAATTTGGgtcaaaaatagggttttttggactttg
tcaaaaatctgttcattagtttttcctaattttttgaacGAAGACGTAGA
ATTACAGTGTGCTAAATATGAAAAAgctcatttttcgaaaaaaatttgag
ccCAACTCTGCCCAACttgcaaaattttgaattattcaTAAAACTTGTTG
TCTTTCCCTTTTATTGTTAATATAACAGATTTTCAAGATTTAttttatgg
aaaaaaaaaatttcaatctttttaaaaGGTATCCCGAAATTCgtaaaaat
ttcgaaagtttttaCCATTAAAGTTAACCATTTATTTATTACAAAATTAA
CTGACTTATTTTCTTGTACTGTTCAGGCTGTTAGTCTCAGAAGCACGTCG
AATTGCAGTCAATTACAAACTACAGTACGGAGAATCCATCCCAACCTCAC
AACTTGTACAAAAAGTAGCTTCTGTCATGCAAGAATATACACAATCTGGG
TAAGTTTTTACCACAACCTCAGACGGACCTTGGAAAACCTCGAAACCTGG
GAAATGAAGGTTTTTTTACGGAAATCTCTTAGGGGAAAAACCAAGGAAGC
CGAGGGAATCTCTTTTCAAATTGTTGATAGCTCAGAGAAACTTCTTGTAA
CAAAATGGCTTGTATTTTGGGGTGGAGTATCTGGTACTTGCAAAGTTTTT
AACCTTTGGGTTTACCATGTTGACCCATCAGAAGCttttaaaattagaaa
ttgattagaaggctttaatctttttttttaatttcggccTACCATTGTGG
ATTATCCTATCAACGTTGAAGCtataaaattaaaagaattatacAGAAAA
TCTTCAGAaggcatttaaaaaaaagtattttcaaagCTGCCCACCAGCCA
TTTGTTGTTCACGAAACTTGAAAAGTACATTATTCAATTCATGCTTAACT
CTGAATTTCATGTGATCTGGAAATGTTTTCAATTCAGAAGCAATCATTTG
ACCGAAAATATCATCTGGATGAGTGTCGTGTTGGGCTGTGGTGGATGTCA
CGTTATTATAAGTTTTCCTCCTCTCCGTTTGTGGATCCTGTCGCTGTTGT
TTAATTGTAGAGGAGGAAGAGAAAGTTTGTTGTGGTGTTTGATTTGACGT
GTCGAGATTCTCCGACACTGAAATAGGCGTAGGGTGAAAATTTGTAGCGA
CTGCTTCATGTTGATTTGAGTTTTGACTAGACGCTTGTTGTTCGCCTGAT
GGAATATTATGATTTGAATGGCGATGTTGAAAGCTCGGATTATCTAGTGT
ATTTTGGTATTGTATGGGTTTTTCGTCGAATATCTCTTCTTCTTGTAAAT
ACGTTGGATCCACATTTCCATAATGATTTGTATGGATGATGGTCAAACTT
TCTGTTGAATCgtcatctgattggttgaaatctTCATCACCATGGTTACG
GTATTGTCCGTCTTCTTCACCACCCGTTATTTGGTTCCGCCCTTTGTATT
CTCGTAAATGTTGATTGAACCAATGAAAGAAATCGTATGCATCCAAATCA
CGTTTCGTTTTCTCGATTTCTTTCAGGTTTGCGTTACTTAATGCCTTCTT
GTAAGCGACGCGTTTACGGCTGTACCGTTTGTAAAGTATGACGAATTGCC
GTTGACCCATCCCTGAAGTAATAAAGAAAGTTCCagttaacaattttttt
tgtgtcGCCACTTTGAAATCTGAGAGATTCTATAAACTGTGCTTACgact
tctatatagtttttggtTTAGTTTTTGTACAACTTCGTGAACTTGCATCG
AGAATTTATAGTACTTTACGTATGATAACTGGAAAATATCGAAAAACAGA
AATTATATAGATGCATGACCAACAACCTATTCAGAATTATGGGAGAGATT
TCGTCAGATTTCgtccattttgttttgatcacTGAACTAAGTTTGCTTTA
AGTGTGTTACAATTCGCGTTTTACTTGTCCCCATTCAACCAACGCTTCAT
TTCTCTAACACATTACACATTTAATTGAGTTTCAGTGACTTGAAAATTGC
TTTTACCTTTTGGTAATTTCAATTCTTCATCCACTCGTGCCCATGCTTCT
TCTTTGATAGACGGTTTCTTGTAAGATGAAAGACTTTTATCGTACAGGCA
TGGATGTTGTCTAACACATGCTGCTATGCTTCTCTCCCAAACCAAATTTC
TGCTGTGAATATCCATTCTCTGagaaaacttcttttttgtttgttttcct
CTGAATCCGAAATCTCTCTTCTCGGCAATTCATATAGTACACAACAATTT
ggttgtttgaaattttttatcagaacagAATTCGCTGTTTCTTTTATAAC
ACACACATATGTTTCTCTCGAAATCACCACATCTCAATCTCACTATTTTT
TCTCATATCACACactactttttttttctcatgagAAAATTCTCTCTTCT
CATTTATAATAAATGAAAGGTTTTTTATCTCAATAATTTCGTCTCCTTGA
CGATGGATTAAATTACATAAGAAAGTTCATTATGTTATATGAAAGTGTTT
ACAGGAAAAAGTATGTGATTTCTTTTAGAAAGGAAGTTTGCTTTTCAAGT
AGTTGTCAAAAACAAATTGAGGAAATTGagaaaaggaatcttttcattCA
TGCGTGAATTTCTTTTCGCGtgattttcaacacttttatACAATccttag
gctacgtcatatcttccttcattttgaacattacacgttttttttttata
agaacaaactatataagaacataaggcttcgaggcccaaacatttaagaa
cattctaagaacattctaaggctttggagacNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaacatttt
aagaacatttttaggcttcaaatccaaaaaactaagaacatccgaaggct
tcgaaaatttttgacgttcttataaaaaaaaaacgtgtaaacatTGACGT
GCCATATGtcgttttattattttcagggaAACAGCAATTTTTGCCATTAT
ATTAACTTTTTCAGGATGTTTCAGCATCAATAGGCCTCAATATTTCTTGA
CATCTCAAAGTCATTTTTTCGCGAAGTCTCAAagtcattttttaactttt
ccttttttctcaattcatttttaagcatttttatttcataaaaactATGG
AATattgcaattttttaaataaagatcCAAAACTGTCAGTCTGTAAATtt
gacatttatttttttaactgcCCCGATCGTGCAGACGACGAGCAAAGGCg
acaaaataactttttgagaAGTGATACTTGGAGATACCGTAGAGACATCG
CGAAAAGATGAATTTGAGATGTCGCGATAATTTGACTTTGAGATGTCGCG
ATAATTTGACTTTGAGATGTCGCGATAATTTGACTTTGAGATGTCGCGAT
AATTTGACTTTGGGATGTCGCGAAAAGTTGACTTTGAGATGTCGCGATAA
TTTGACTTTGAGATGTCGCGAAAAATGAATTTGAGATGTCGCGATAATTT
GACTTTGAGACATCGCGAAAATTTGGCTTTCAGACATCTCGAAAAGTTGA
CTTTAGGATGTCgtgaaaaatgaatttgagaTGTCGCGAAAAGTTGACTT
TGAGATGTCGCGAAAAATGAATTTGAGATGTCGCGATAATTTGACTTTGA
GACATCGCGAAAATTTGGCTTTGAGACATCTCGAAAAGTTGACTTTCTTA
GGATGTCgtgaaaaatgaatttgagaTGTCGCGAAAAGTTGACTTTGAGA
TGTTGCGAAAAGTTGAATTTGGGATGTCGAGAAAAAATGACTTTGAGACT
TTGCGAAAAATGAATTTGAGATGTCGCGAAAAGTTTACGTTGAAATGTCG
CGAAAAAAAGACGTTCAGACTTTGACATTCCGAAAAGGTTTTAATAAAGG
CCAGAATTGTTATAtccctaaaaataataaaacgaCATATTGCACGTCAC
ATTAAACTCCTGTTCTTTGGGATAtgcgcactgctcttgttttgaaaatt
gaatttctccggATACATCGCATGCGCGATGGCGTTCtgatgaaacaata
gagagtttcgagacctaagccaatcagctgtgttttaaataGGGGGAGGG
GGATGTTAGGActaattttttaccatttgtcaaaagttgcctttgggtat
aaaaagaagaaaaattcatgtaaaaacccTGTGGCacttttttcaaggtt
gccacGGGTAGGGTGCCACCACCGCTAcgccagcaaaatcgaaatttcaa
aaaaattttaaacatagcgaagtgacccctcatttgaaaggtattttcat
gctgattaagaaaatcaatattgtaAAGGTGAAAAACACTCTAACAAGAA
ATAACTTAagaaaaacgatcaaaaaattgcgtttttagcaaaattctcaa
aattttgccaacTGTCGGAAATTACTTTTTGTGACAGTGTTATTCAACCT
CATTATATTGACTTTCTcaatcagcatgaaaatacctttcaaatgagggg
tcacttcactatgttttgaaaatttttgaaattttgatgattaacatgat
tttttcttctttttatacccaaaggcaacttttgacaaatgggctaAGAA
TTTATGCCATTTTTGCAGAATAACACCCCCCCTATTGTAAACGTTCTTTT
ATTTatatctctattgataaacttcttttgttaaaaacttcTATTATGTT
TAATCTTATCAAAGGCAATATATTCGAACTGATAGCCAGGTACTTCCAAc
ttaaacaaattaaatttgtcaTTCGATTCGAATTTAGCTAGAGTTACCTT
ACCTTGAGTTACCTTGAGCTTCTTTCGTAATATCTTTACGCATCCATCCT
GTGAGGACcgatgtaaattttcatattgatgatGCTGTTTGTTTCAGCTC
GTCTCATCATAGTGTAGCCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ttttctaaaaatgttttttctttttctgaataAAATCTTTCGCTCGCGTG
GTatcttctgaaattttttagtGTTTGGTTTTCGTTTCGTGGCTTACGAA
TAATTATAGAATTCCGTAGTACAGTAATCGTTTTAGGGAAACCCATCAAA
GATATATAGCCATTTTATTGTCAAAAGAATAAGAACAGCTGTgctctttg
aaaaatttggacaatatttttctcgtttccaaatttccaaatagacgtta
ttttccaaaaatttgtagCCATCGACTGTTCTTagcatttttgagttttt
aaatgttcttaatttatcattttttgcaatttccttagaaatcgggtgtt
ttagagtccataaagcttttaaaatgttctcaacttgttcttgacTTTTG
GCGATTGAAGCCTTATCTATAGTTTGTAGATAATTCTACCGTTGAAGACC
GGAGTTAACTTTCAGATACTCTTTTTCATTCTAGGGGTGTCCGTCCTTTC
GGTGTATCATTGTTAGTATGCGGATTCGATGAAGAAACACCATCTCTTTT
TCAATGTGATCCTTCCGGTGCTTACTTCGCCTGGAAAGCCACCGCTATCG
GCAAAAACTACGTCAACGGAAaaactttcttagaaaaaaggtATGTTTTT
AAGGCCCACGTCCCTAAGTTTGCTTATACATCTTCGGAAAAGTTATACCG
TCCCATATTCGTCGATTTCTTCTGTATCGACACTGTTTCCACTGTTACAG
TGGAGCacatatattttcttttgtcaaTCCTTACATACCGCGTGTCCGGA
AAAAAGCAGAATATAATTATTATGTTATTGTTTTTTTCGTTTATTTATAA
AATTCGTTCCGCTTTCTTTCAGACACACTTGTACAGGGTCCACGCATAGC
CCGATACAATGTTTGCGGAAAAAAGCGGAACAGAATTTACAGTGATTTTT
GAGGACATGTCCATGTATAGCCATGTTAAATGTATTCTTTCCTTCTCTCA
TTTGTAGATACAACGATACGCTGGAATTAGAAGATGCCATTCACACAGCT
ATCTTGACTCTCAAAGAAGGTTTCGAAGGACAAATGAACGAAGATAATAT
TGAAGTGGGAATATGTGATAAAAATGGTTTCCGTAAGCTTACACCTAGTG
AAATAAAAGACTATTTAGCATCCATTCTTTCTTAATCTTTATTGGTGTAT
CGACCATTCTTcatactaaaataccaagtcaACATCGAATACTGGAATCA
GGATCCTGTCAGCCGTATGGATAAtcgatttcatttttcaaagaacGACG
ATTCAGAAATTCGTAgcattgttttttatattttcaaatatttaacgTTA
AAAATACATTGAAAGTGCGAATTATAATTGTTTTGTGTTTATTTCTCTAC
TGATTCTAATAAAATCGTGAATGAtgaatgtttcaatattttaagcAGTC
GGCCCCTAAAATGAAGGTCAAATTTGATTAAATTGACTCTAGCATCGCAC
CAATCACCGTCTGTTACTATTTTTGAATGATTTGGTTTTTTCCTTTCCAa
ag

Coding sequence (CDS) from alignment at scaffold_200:30338..44889+

>TCONS_00051279 ID=TCONS_00051279|Name=TCONS_00051279|organism=Clytia hemisphaerica|type=CDS|length=4935bp|location=Sequence derived from alignment at scaffold_200:30338..44889+ (Clytia hemisphaerica)
ATGGGAGAGAGATACAGCTTCAGTTTGACAACTTTCAGCCCTTCTGGAAA
GCTTGTACAAATCGAATATGCTTTAGCTGCTGTAGCTGCTGGTGGTCCAT
CAGTTGGATTAAAAGCCGTGAATGGTTCAGTTATTGCTGCagagaagaaa
caaaaatcaatattatacGATGAAAAGACAGTATCAAAGATTGAGATGAT
AACAAAGCATATAGGAATGGTATACAGTGGGATGGGGCCAGACTTCAGGC
TGTTAGTCTCAGAAGCACGTCGAATTGCAGTCAATTACAAACTACAGTAC
GGAGAATCCATCCCAACCTCACAACTTGTACAAAAAGTAGCTTCTGTCAT
GCAAGAATATACACAATCTGGGGGTGTCCGTCCTTTCGGTGTATCATTGT
TAGTATGCGGATTCGATGAAGAAACACCATCTCTTTTTCAATGTGATCCT
TCCGGTGCTTACTTCGCCTGGAAAGCCACCGCTATCGGCAAAAACTACGT
CAACGGAAaaactttcttagaaaaaagATACAACGATACGCTGGAATTAG
AAGATGCCATTCACACAGCTATCTTGACTCTCAAAGAAGGTTTCGAAGGA
CAAATGAACGAAGATAATATTGAAGTGGGAATATGTGATAAAAATGGTTT
CCGTAAGCTTACACCTAGTGAAATAAAAGACTATTTAGCATCCATTCTTT
CTTAAATGGGAGAGAGATACAGCTTCAGTTTGACAACTTTCAGCCCTTCT
GGAAAGCTTGTACAAATCGAATATGCTTTAGCTGCTGTAGCTGCTGGTGG
TCCATCAGTTGGATTAAAAGCCGTGAATGGTTCAGTTATTGCTGCagaga
agaaacaaaaatcaatattatacGATGAAAAGACAGTATCAAAGATTGAG
ATGATAACAAAGCATATAGGAATGGTATACAGTGGGATGGGGCCAGACTT
CAGGCTGTTAGTCTCAGAAGCACGTCGAATTGCAGTCAATTACAAACTAC
AGTACGGAGAATCCATCCCAACCTCACAACTTGTACAAAAAGTAGCTTCT
GTCATGCAAGAATATACACAATCTGGGGGTGTCCGTCCTTTCGGTGTATC
ATTGTTAGTATGCGGATTCGATGAAGAAACACCATCTCTTTTTCAATGTG
ATCCTTCCGGTGCTTACTTCGCCTGGAAAGCCACCGCTATCGGCAAAAAC
TACGTCAACGGAAaaactttcttagaaaaaagATACAACGATACGCTGGA
ATTAGAAGATGCCATTCACACAGCTATCTTGACTCTCAAAGAAGGTTTCG
AAGGACAAATGAACGAAGATAATATTGAAGTGGGAATATGTGATAAAAAT
GGTTTCCGTAAGCTTACACCTAGTGAAATAAAAGACTATTTAGCATCCAT
TCTTTCTTAAATGGGAGAGAGATACAGCTTCAGTTTGACAACTTTCAGCC
CTTCTGGAAAGCTTGTACAAATCGAATATGCTTTAGCTGCTGTAGCTGCT
GGTGGTCCATCAGTTGGATTAAAAGCCGTGAATGGTTCAGTTATTGCTGC
agagaagaaacaaaaatcaatattatacGATGAAAAGACAGTATCAAAGA
TTGAGATGATAACAAAGCATATAGGAATGGTATACAGTGGGATGGGGCCA
GACTTCAGGCTGTTAGTCTCAGAAGCACGTCGAATTGCAGTCAATTACAA
ACTACAGTACGGAGAATCCATCCCAACCTCACAACTTGTACAAAAAGTAG
CTTCTGTCATGCAAGAATATACACAATCTGGGGGTGTCCGTCCTTTCGGT
GTATCATTGTTAGTATGCGGATTCGATGAAGAAACACCATCTCTTTTTCA
ATGTGATCCTTCCGGTGCTTACTTCGCCTGGAAAGCCACCGCTATCGGCA
AAAACTACGTCAACGGAAaaactttcttagaaaaaagATACAACGATACG
CTGGAATTAGAAGATGCCATTCACACAGCTATCTTGACTCTCAAAGAAGG
TTTCGAAGGACAAATGAACGAAGATAATATTGAAGTGGGAATATGTGATA
AAAATGGTTTCCGTAAGCTTACACCTAGTGAAATAAAAGACTATTTAGCA
TCCATTCTTTCTTAAATGGGAGAGAGATACAGCTTCAGTTTGACAACTTT
CAGCCCTTCTGGAAAGCTTGTACAAATCGAATATGCTTTAGCTGCTGTAG
CTGCTGGTGGTCCATCAGTTGGATTAAAAGCCGTGAATGGTTCAGTTATT
GCTGCagagaagaaacaaaaatcaatattatacGATGAAAAGACAGTATC
AAAGATTGAGATGATAACAAAGCATATAGGAATGGTATACAGTGGGATGG
GGCCAGACTTCAGGCTGTTAGTCTCAGAAGCACGTCGAATTGCAGTCAAT
TACAAACTACAGTACGGAGAATCCATCCCAACCTCACAACTTGTACAAAA
AGTAGCTTCTGTCATGCAAGAATATACACAATCTGGGGGTGTCCGTCCTT
TCGGTGTATCATTGTTAGTATGCGGATTCGATGAAGAAACACCATCTCTT
TTTCAATGTGATCCTTCCGGTGCTTACTTCGCCTGGAAAGCCACCGCTAT
CGGCAAAAACTACGTCAACGGAAaaactttcttagaaaaaagATACAACG
ATACGCTGGAATTAGAAGATGCCATTCACACAGCTATCTTGACTCTCAAA
GAAGGTTTCGAAGGACAAATGAACGAAGATAATATTGAAGTGGGAATATG
TGATAAAAATGGTTTCCGTAAGCTTACACCTAGTGAAATAAAAGACTATT
TAGCATCCATTCTTTCTTAAATGGGAGAGAGATACAGCTTCAGTTTGACA
ACTTTCAGCCCTTCTGGAAAGCTTGTACAAATCGAATATGCTTTAGCTGC
TGTAGCTGCTGGTGGTCCATCAGTTGGATTAAAAGCCGTGAATGGTTCAG
TTATTGCTGCagagaagaaacaaaaatcaatattatacGATGAAAAGACA
GTATCAAAGATTGAGATGATAACAAAGCATATAGGAATGGTATACAGTGG
GATGGGGCCAGACTTCAGGCTGTTAGTCTCAGAAGCACGTCGAATTGCAG
TCAATTACAAACTACAGTACGGAGAATCCATCCCAACCTCACAACTTGTA
CAAAAAGTAGCTTCTGTCATGCAAGAATATACACAATCTGGGGGTGTCCG
TCCTTTCGGTGTATCATTGTTAGTATGCGGATTCGATGAAGAAACACCAT
CTCTTTTTCAATGTGATCCTTCCGGTGCTTACTTCGCCTGGAAAGCCACC
GCTATCGGCAAAAACTACGTCAACGGAAaaactttcttagaaaaaagATA
CAACGATACGCTGGAATTAGAAGATGCCATTCACACAGCTATCTTGACTC
TCAAAGAAGGTTTCGAAGGACAAATGAACGAAGATAATATTGAAGTGGGA
ATATGTGATAAAAATGGTTTCCGTAAGCTTACACCTAGTGAAATAAAAGA
CTATTTAGCATCCATTCTTTCTTAAATGGGAGAGAGATACAGCTTCAGTT
TGACAACTTTCAGCCCTTCTGGAAAGCTTGTACAAATCGAATATGCTTTA
GCTGCTGTAGCTGCTGGTGGTCCATCAGTTGGATTAAAAGCCGTGAATGG
TTCAGTTATTGCTGCagagaagaaacaaaaatcaatattatacGATGAAA
AGACAGTATCAAAGATTGAGATGATAACAAAGCATATAGGAATGGTATAC
AGTGGGATGGGGCCAGACTTCAGGCTGTTAGTCTCAGAAGCACGTCGAAT
TGCAGTCAATTACAAACTACAGTACGGAGAATCCATCCCAACCTCACAAC
TTGTACAAAAAGTAGCTTCTGTCATGCAAGAATATACACAATCTGGGGGT
GTCCGTCCTTTCGGTGTATCATTGTTAGTATGCGGATTCGATGAAGAAAC
ACCATCTCTTTTTCAATGTGATCCTTCCGGTGCTTACTTCGCCTGGAAAG
CCACCGCTATCGGCAAAAACTACGTCAACGGAAaaactttcttagaaaaa
agATACAACGATACGCTGGAATTAGAAGATGCCATTCACACAGCTATCTT
GACTCTCAAAGAAGGTTTCGAAGGACAAATGAACGAAGATAATATTGAAG
TGGGAATATGTGATAAAAATGGTTTCCGTAAGCTTACACCTAGTGAAATA
AAAGACTATTTAGCATCCATTCTTTCTTAAATGGGAGAGAGATACAGCTT
CAGTTTGACAACTTTCAGCCCTTCTGGAAAGCTTGTACAAATCGAATATG
CTTTAGCTGCTGTAGCTGCTGGTGGTCCATCAGTTGGATTAAAAGCCGTG
AATGGTTCAGTTATTGCTGCagagaagaaacaaaaatcaatattatacGA
TGAAAAGACAGTATCAAAGATTGAGATGATAACAAAGCATATAGGAATGG
TATACAGTGGGATGGGGCCAGACTTCAGGCTGTTAGTCTCAGAAGCACGT
CGAATTGCAGTCAATTACAAACTACAGTACGGAGAATCCATCCCAACCTC
ACAACTTGTACAAAAAGTAGCTTCTGTCATGCAAGAATATACACAATCTG
GGGGTGTCCGTCCTTTCGGTGTATCATTGTTAGTATGCGGATTCGATGAA
GAAACACCATCTCTTTTTCAATGTGATCCTTCCGGTGCTTACTTCGCCTG
GAAAGCCACCGCTATCGGCAAAAACTACGTCAACGGAAaaactttcttag
aaaaaagATACAACGATACGCTGGAATTAGAAGATGCCATTCACACAGCT
ATCTTGACTCTCAAAGAAGGTTTCGAAGGACAAATGAACGAAGATAATAT
TGAAGTGGGAATATGTGATAAAAATGGTTTCCGTAAGCTTACACCTAGTG
AAATAAAAGACTATTTAGCATCCATTCTTTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032505XLOC_032505Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051279-proteinTCONS_00051279-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051279-exon-scaffold_200-1491911889:30338..30877TCONS_00051279-exon-scaffold_200-1491911889:30338..30877Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1510915933:30338..30877TCONS_00051279-exon-scaffold_200-1510915933:30338..30877Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1575043694:30338..30877TCONS_00051279-exon-scaffold_200-1575043694:30338..30877Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1491911889:34916..34992TCONS_00051279-exon-scaffold_200-1491911889:34916..34992Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1510915933:34916..34992TCONS_00051279-exon-scaffold_200-1510915933:34916..34992Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1575043694:34916..34992TCONS_00051279-exon-scaffold_200-1575043694:34916..34992Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1491911889:35316..35389TCONS_00051279-exon-scaffold_200-1491911889:35316..35389Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1510915933:35316..35389TCONS_00051279-exon-scaffold_200-1510915933:35316..35389Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1575043694:35316..35389TCONS_00051279-exon-scaffold_200-1575043694:35316..35389Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1491911889:35792..35850TCONS_00051279-exon-scaffold_200-1491911889:35792..35850Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1510915933:35792..35850TCONS_00051279-exon-scaffold_200-1510915933:35792..35850Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1575043694:35792..35850TCONS_00051279-exon-scaffold_200-1575043694:35792..35850Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1491911889:36464..36586TCONS_00051279-exon-scaffold_200-1491911889:36464..36586Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1510915933:36464..36586TCONS_00051279-exon-scaffold_200-1510915933:36464..36586Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1575043694:36464..36586TCONS_00051279-exon-scaffold_200-1575043694:36464..36586Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1491911889:43822..43977TCONS_00051279-exon-scaffold_200-1491911889:43822..43977Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1510915933:43822..43977TCONS_00051279-exon-scaffold_200-1510915933:43822..43977Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1575043694:43822..43977TCONS_00051279-exon-scaffold_200-1575043694:43822..43977Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1491911889:44345..44889TCONS_00051279-exon-scaffold_200-1491911889:44345..44889Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1510915933:44345..44889TCONS_00051279-exon-scaffold_200-1510915933:44345..44889Clytia hemisphaericaexon
TCONS_00051279-exon-scaffold_200-1575043694:44345..44889TCONS_00051279-exon-scaffold_200-1575043694:44345..44889Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:30338..44889 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
124.677	130.322	98.96	88.0811	77.6271	86.6578	103.339	109.091	100.73	90.2827	87.0282	77.496	50.7981	49.8872	65.5736	73.3152	172.872	89.9349	26.2957	34.9078	84.3131	131.423	67.3904	64.0079	84.7999	94.7129	72.297	58.155	55.9371	48.6612
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000426Proteasome_asu_N
IPR001353Proteasome_sua/b
IPR029055Ntn_hydrolases_N
IPR023332Proteasome_alpha-type
Vocabulary: Cellular Component
TermDefinition
GO:0019773proteasome core complex, alpha-subunit complex
GO:0005839proteasome core complex
Vocabulary: Molecular Function
TermDefinition
GO:0004175endopeptidase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051603 proteolysis involved in cellular protein catabolic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005839 proteasome core complex
cellular_component GO:0019773 proteasome core complex, alpha-subunit complex
molecular_function GO:0004175 endopeptidase activity
molecular_function GO:0004298 threonine-type endopeptidase activity
Blast
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BLAST of TCONS_00051279 vs. Swiss-Prot (Human)
Match: PSA2 (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 389.808 bits (1000), Expect = 4.834e-133
Identity = 185/233 (79.40%), Postives = 208/233 (89.27%), Query Frame = 2 
Query:  503 MGER-YSFSLTTFSPSGKLVQIEYALAAVAAGGPSVGLKAVNGSVIAAEKKQKSILYDEKTVSKIEMITKHIGMVYSGMGPDFRLLVSEARRIAVNYKLQYGESIPTSQLVQKVASVMQEYTQSGGVRPFGVSLLVCGFDEETPSLFQCDPSGAYFAWKATAIGKNYVNGKTFLEKRYNDTLELEDAIHTAILTLKEGFEGQMNEDNIEVGICDKNGFRKLTPSEIKDYLASI 1198
            M ER YSFSLTTFSPSGKLVQIEYALAAVA G PSVG+KA NG V+A EKKQKSILYDE++V K+E ITKHIG+VYSGMGPD+R+LV  AR++A  Y L Y E IPT+QLVQ+VASVMQEYTQSGGVRPFGVSLL+CG++E  P LFQ DPSGAYFAWKATA+GKNYVNGKTFLEKRYN+ LELEDAIHTAILTLKE FEGQM EDNIEVGIC++ GFR+LTP+E+KDYLA+I
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAI 233
The following BLAST results are available for this feature:
BLAST of TCONS_00051279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSA24.834e-13379.40Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
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