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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051578 ID=TCONS_00051578|Name=TCONS_00051578|organism=Clytia hemisphaerica|type=transcript|length=1340bp
CATTTCACACGACCTTTCTATGTATTTTTGGAAGATAGTTGAAATGGCTG
AAGAAGGAAAACCGCAAACAAAAAgacttgaaaatattgaaaataatggC
TTTGGTCCATTGCCGAAAGCTCGTGGCATGCGTGATACTATCCTCTTCAG
TTTACTAGTCCTTCTTGTGTATTTAAGCAGTGCTGCAGTATACCGAAATT
TTTACCAAGGAAAACGAGCTCTACTTTCACAAGATGTTGGAGATGCCTTT
GTAATACTTTTTGGAATCTGTCTTGGGGAGTTGTTGCGCTCAATTGTGCT
TTACGGAGAGGAGAAGAATCACACAGTATCGCGATATTCAAACTCTCATT
GGAGGGCTTTACAGGCTTGTGTTCCATACTCTTGGAAGCAAATTTGTGTT
TTCAAGattatttttttggTTATATCTTTTTGTGGAACTGCTGTATACtg
gatttttgctgaaaaggtgtcGTTCAATGCATTCCATTTGTTATCCATAA
CAGTTTTCAGTGCAATCAATCAAGTGGTTCTGTCCAAAGCTGAAGTCTCC
CATTTGAATGAAACTGAAAACAAACATGTTGCTGATGGCCTTGCATGGAG
TTATTACTTTGGCTACCTCAAAATCATGTTGCCTGGTATGAAAGGAATGT
TGGCTTTAGCTCAAGGAGATGAGTACAAAATTGATGGCGAAGATATTCGT
GATAAATTATCTTCAGAAAAGCTTCACATTGTGATTCCCAAAAATTGTTA
CACCTATGATTCTTTTAAAGAAGTAGATAAAAGAATCACTTTTAAATGCA
GTATGCCACCAATCAAGAAAACCAGAGGAGGAGTTCAAGAGCGTGTCTAC
AAGAATactgtttgggaggtaaaactTGAAGATGATGAAGAACCACTGTA
CGTGCTTATGGAATATGCCACACCTGTCCTATCCATGTATGAcatgaaga
aagaagaaagtgCTCACTTCCATGGACAGGATCTTGAAGACCAAGTTAAA
GAATTTACAACCAAACTGCAGAAGATTTTggatgaagatgaagaatgcAA
AAATAAtatCAATCTTTGTATGGATTTATTAAACACAAAACTTATAAAAG
CGACACCATTTTCACAAGTATTTTTAACGATTATCAAGtatagaaaacaa
tttttaggataaaatataatgtttattgttgtttttgtaATGTTTTAATT
CTTTTATTCCTTGTTAATGGAAGAAATTTATTCCATAATCTTGTTGTAAA
AGGTGAATGTATTAAAATAAGCAGGTTATATTGTAAGAATTCTTTATTTG
AAAGACACATATGATTGAAAAAGTTGCGCTAATAGCTTTT Run BLAST on NCBI transcript from alignment at scaffold_202:1181369..1184920+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051578 ID=TCONS_00051578|Name=TCONS_00051578|organism=Clytia hemisphaerica|type=transcript|length=3552bp|location=Sequence derived from alignment at scaffold_202:1181369..1184920+ (Clytia hemisphaerica)
CATTTCACACGACCTTTCTATGTATTTTTGGAAGATAGTATGTATTTTGA
AAGATACCGGTAGTATTTTTGTTCACTGGAAAGTATTCTTTCCataaaac
taaaaatcttcaaattttgacaattttttatttttcgatgacatcattgt
ttatgacgtcatttccttaatatctcctgacatatttattttcagatata
ggttgtgacctttttttatcagtttttcatgctctttcgattgcaacaaa
aacttttcaattttactactttttattttggttgccatagtaaccagtga
cgtcagtttccatggcaacaggTGATCACACCCaaccccacctctcaaat
tttgatcttctacattcaaggaacaactTTTAGcacttaaatattttttg
tagcttTAAAAACATGGCATAGCACAGTTGAGAGATAAAGGTTGTCTGTC
GACTTAAGACAAATTTACTATAAATAAGACTCAATAATTCCAAAAATAAC
ACACAAATTTCTTTGACAATATGGAGGGCTCATGCACCAACAAAAAACAT
TCTAGAATTTTAGCACTAGAAAAAGGGCAAACTCAAACAAATAATGTATC
TTGAAGCTAATCAATAACATCATAACCTGTCATCGCAATTAACAGAAGGT
TTCTTTTGGTATTACTTATTGACTTTATTTTAACGCATGGTGTATTCTTA
TTTTGTTTGTAGGTTGAAATGGCTGAAGAAGGAAAACCGCAAACAAAAAg
acttgaaaatattgaaaataatggCTTTGGTCCATTGCCGAAAGCTCGTG
GCATGCGTGATACTATCCTCTTCAGTTTACTAGTCCTTCTTGTGTATTTA
AGCAGTGCTGCAGTATACCGAAATTTTTACCAAGGAAAACGAGCTCTACT
TTCACAAGATGTTGGAGATGCCTTTGTAATACTTTTTGGAATCTGTCTTG
GGGAGTTGTTGCGCTCAATTGTGCTTTACGGAGAGGAGAAGAATCACACA
GTATCGCGATATTCAAACTCTCATTGGAGGGCTTTACAGGCTTGTGTTCC
ATACTCTTGGAAGCAAATTTGTGTTTTCAAGGTAAAATTGGTTTTTTAAC
ATTATTGGAAGTAGTATGTTGAAGATGTCTGACTTTTCTTAACTTACAGG
GTTGATTACAAAAGacttctgaattttttttatcaacatAGGGCTGATAA
ATTTTAAACTCCCTCCTCCCATGCTGTTATCAAACAAGATTTTTCGAAAC
AAAGTTTTACCCTTTTTGGAAACAATTTTCCCAACCATGTCCATCAGCAT
CagaggaattttttattttttatttttttatcactgTTTTTAAAGAGATT
TAATCTGATTGATTTAAATTTTTNAGTATCGCGATATTCAAACTCTCATT
GGAAGGCTTTACAGGCTTGTGTTCCATACTCTTGGAAGCAAATTTGTGTT
TTCAAGGTAAAATTGGTCTTTTAACATTATTGGAAATAGTATGTTGAAGA
TGTCTGACTTTTCTTAACTTACGGATTTGATTACAAaagacttttgaatt
ttttttatcaacatAGGGCTGATAAATTTTAAACTCCCTCCTCCCATGCT
GttatcaaacaaaatttttcgaaacaaAGTTTTACCCTTTTTGGAAACAA
TTTTCCCAACCATGTCCATCAGCATCAgaggaatttttttattttttatt
tttttatcactgtttttaaagagatttaatctgattaatttaaattttca
ttttagattatttttttggTTATATCTTTTTGTGGAACTGCTGTATACtg
gatttttgctgaaaaggtgtcGTTCAATGCATTCCATTTGTTATCCATAA
CAGTTTTCAGTGCAATCAATCAAGTGGTTCTGTCCAAAGCTGAAGTCTCC
CATTTGAATGAAACTGAAAACAAACATGTTGCTGATGGCCTTGCATGGAG
TTATTACTTTGGCTACCTCAAAATCATGTTGCCTGGTATGAAAGGAATGT
TGGCTTTAGCTCAAGGAGATGAGTACAAAATTGATGGCGAAGATATTCGT
GATAAATTATCTTCAGAAAAGCTTCACATTGTGATTCCCAAAAATTGTTA
CACCTATGATTCTTTTAAAGAAGTAGATAAAAGAATCACTTTTAAATGCA
GTATGCCACCAATCAAGAAAACCAGAGGAGGAGTTCAAGAGCGTGTCTAC
AAGAATactgtttgggaggtaaaactTGAAGATGATGAAGAACCACTGTA
CGTGCTTATGGAATATGCCACACCTGTCCTATCCATGTATGAcatgaaga
aagaagaaagtgCTCACTTCCATGGACAGGATCTTGAAGACCAAGTTAAA
GAATTTACAACCAAACTGCAGAAGATTTTggatgaagatgaagaatgcAA
AAATAAGTATGAAATTGTCTTATGCGGTGATGTCAAATCCCAAAAACTCA
GCGAGATCATGCGCAGAACCATtcaaaaggaaaaggaaaataaagaaaag
gatAAAAACATATAAGCTAACATAATGGTagttttgaattgaaatatgaa
atgaAGTTCCCAGGAAAAAAACCGATTCcacctttttttatttcagaagt
GGTATATTTCCAATCACAGCTATTTTTGGACCCAGGGATGTAATAGCGTT
TGAGAATGTATATGCCGAACAGGCCACTGAACACTGAGCCAACTCTATAG
AGAgatttgatttttgtgaaaaagtttacaaaatcAACGAAAAAGTGTTC
CTCAGAgatacaattttgaaaaaatttctaaccTTAGAGACCTTAGAGAG
ATCTTTTCTTGGTttccaaaaaaggaaaaatcccaaccttagagagactt
gaattttttttctaaactccTAGTGATCGTCTGCACATACCCAGAActat
ttttgcctaaattcCTCTCCCCCGTTTTTCAGTAACTACTATGTTGTGAA
CAGTATTAAATCATTTAAGATAATAACCCACTGAGAACTGTAGAATCTTT
CCAATAAATGTGACATGAAGTCAGAAAACTGGAAACTTCTCAAAACTAAA
GTTTGGATGGGCTATAACTATCATGACTATAGTTTTGCGTTTTTGtgaat
tattaaaaaatattaaatttaagTTTTAGGGTAATTTGAAGGGCTAGTTT
TTGTCTCGTTTGTATATACCCTTTTCAAGccatttttgtagattttctca
attttcCATACATCATCCCGAATCTTATTGTATAATTGAAAACTTTTgtc
tttaaattttatttttagtatCAATCTTTGTATGGATTTATTAAACACAA
AACTTATAAAAGCGACACCATTTTCACAAGTATTTTTAACGATTATCAAG
tatagaaaacaatttttaggataaaatataatgtttattgttgtttttgt
aATGTTTTAATTCTTTTATTCCTTGTTAATGGAAGAAATTTATTCCATAA
TCTTGTTGTAAAAGGTGAATGTATTAAAATAAGCAGGTTATATTGTAAGA
ATTCTTTATTTGAAAGACACATATGATTGAAAAAGTTGCGCTAATAGCTT
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051578-exon-scaffold_202-1491911889:1181369..1181405 | TCONS_00051578-exon-scaffold_202-1491911889:1181369..1181405 | Clytia hemisphaerica | exon |
| TCONS_00051578-exon-scaffold_202-1510915933:1181369..1181405 | TCONS_00051578-exon-scaffold_202-1510915933:1181369..1181405 | Clytia hemisphaerica | exon |
| TCONS_00051578-exon-scaffold_202-1575043694:1181369..1181405 | TCONS_00051578-exon-scaffold_202-1575043694:1181369..1181405 | Clytia hemisphaerica | exon |
| TCONS_00051578-exon-scaffold_202-1491911889:1182081..1182449 | TCONS_00051578-exon-scaffold_202-1491911889:1182081..1182449 | Clytia hemisphaerica | exon |
| TCONS_00051578-exon-scaffold_202-1510915933:1182081..1182449 | TCONS_00051578-exon-scaffold_202-1510915933:1182081..1182449 | Clytia hemisphaerica | exon |
| TCONS_00051578-exon-scaffold_202-1575043694:1182081..1182449 | TCONS_00051578-exon-scaffold_202-1575043694:1182081..1182449 | Clytia hemisphaerica | exon |
| TCONS_00051578-exon-scaffold_202-1491911889:1183125..1183774 | TCONS_00051578-exon-scaffold_202-1491911889:1183125..1183774 | Clytia hemisphaerica | exon |
| TCONS_00051578-exon-scaffold_202-1510915933:1183125..1183774 | TCONS_00051578-exon-scaffold_202-1510915933:1183125..1183774 | Clytia hemisphaerica | exon |
| TCONS_00051578-exon-scaffold_202-1575043694:1183125..1183774 | TCONS_00051578-exon-scaffold_202-1575043694:1183125..1183774 | Clytia hemisphaerica | exon |
| TCONS_00051578-exon-scaffold_202-1491911889:1184637..1184920 | TCONS_00051578-exon-scaffold_202-1491911889:1184637..1184920 | Clytia hemisphaerica | exon |
| TCONS_00051578-exon-scaffold_202-1510915933:1184637..1184920 | TCONS_00051578-exon-scaffold_202-1510915933:1184637..1184920 | Clytia hemisphaerica | exon |
| TCONS_00051578-exon-scaffold_202-1575043694:1184637..1184920 | TCONS_00051578-exon-scaffold_202-1575043694:1184637..1184920 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:1181369..1184920 + |
Blast
BLAST of TCONS_00051578 vs. Swiss-Prot (Human)
Match: STING (Stimulator of interferon genes protein OS=Homo sapiens GN=TMEM173 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 9.156e-32 Identity = 78/258 (30.23%), Postives = 131/258 (50.78%), Query Frame = 2
Query: 305 GEEKNHTVSRYSNSHWRALQACV--PYSWKQICVFKIIFL--VISFCGTAVYWIFAEKVSFNAFHLLSITVFSAINQVVLSKAEVSHLNETENKHVADGLAWSYYFGYLKIMLPGMKGMLALAQGDEYKIDGEDIRDKLSSEKLHIVIPKNCYTYDSFKEVDKRITFKCSMPPIKKTRGGVQERVYKNTVWEVKLEDDEEPLYVLMEYATPVLSMYDMKKEESAHFHGQDLEDQVKEFTTKLQKILDEDEECKNNINL 1066
EE H SRY S+WR ++AC+ P + + I F + + G W+ A A ++L + L+ AE+S + E N +VA GLAWSYY GYL+++LP ++ A+ Y ++ S++L+I++P +C D+ D I F +P G+++RVY N+++E+ LE+ + ++EYATP+ +++ M + A F +D +Q K F L+ IL + E +NN L
Sbjct: 67 AEELRHIHSRYRGSYWRTVRACLGCPLRRGALLLLSIYFYYSLPNAVGPPFTWMLALLGLSQALNIL-------LGLKGLAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQ-----ARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVYSNSIYEL-LENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRL 311
The following BLAST results are available for this feature:
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