TCONS_00051589 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051589
Unique NameTCONS_00051589
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1122

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051589 ID=TCONS_00051589|Name=TCONS_00051589|organism=Clytia hemisphaerica|type=transcript|length=1122bp
ACATGGATAAATCTTTAAAAGTTAACAACTTCTTTGGCGAGCTTCCTGAG
CGACGTGGTTACGGTGCAGAATGCGGTAAACTTGCTGCAGTTGTTGTGTT
TCTTTTAACGCTGGCAAGACATCGAACATCGAACAACAAGGAGATTATAT
CATTAGAAGATCTTGGTGATATTGCTGTTATTGTCTTAGCAATAATCTCT
GCACAGCTCTTACGATGCCTTTATTTGCTGGTTGAGGAAAGACGATGTTT
GTTTTCGAGATATAATGGCTCCATACAACGAATGCTGAAAGCTTGTTTAC
CAGACTCTCCTAGCACAGTCATCAGTATCAAGATTGGTTTGTTCCTCATT
TCATTCGCTGGTTCATCTTTCTATTGGATCACATCAACTGAACCTCGTTT
GGATCGCTCTCTCTTCATAGTAATCACTTTTATCTTATCCCTGGATGTCC
TTCATTTATCCAAAGCTGAGATCTCACACCTCAATGAAACCAAAAACCAA
CATGTTGCTGATGGCCTTGCTTGGAGTTATTACTTTGGttatttgaaatt
gattttaCCAAGGTTTCCAGAGATGATTAATTTAGCCCATAGCGAAGATG
ATACATTCAAAGCAGATGGTGTTGATCTACGTGACCAATTATCGTCAGAA
AAGCTGTTCATTATTATCCCAAAGAATTGCTATACCCATGCACAACTTGG
TCAGTTTGATGATCGAATCTGTAGAGATGGTTTTAGCACGCCAGAATTCA
AGTACACCAGAGCTGGCGTCAAAGAGAGGTCATACAAGAATACCGCATGG
AGAATTGACTACCCTGGAGAAGAATCACTGTATGTTCTAATGGAATATGC
GACACCTTGTTTATCTATGCACGATATGATGCTACATGCTCGTTCccagt
ttgatgaagaagatttGGAAGCACAAGTGAAGGAATTCTCAATCAAACTA
CAATCGATTTTGGACAGCGATGAAAAATGTAAAGGTCGATATCATTTGAT
ATTGTGTGGTGATATTAGACATCAGAAACTTGGTGATCTAATTAAAGAAG
CTGTGCAAAAAGAACGAGAAGAACAAAAGAAAGgacaataatttgaaaat
tatgtTTTAGTATTCCCATGAC
Run BLAST on NCBI

protein sequence of TCONS_00051589-protein

>TCONS_00051589-protein ID=TCONS_00051589-protein|Name=TCONS_00051589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
MDKSLKVNNFFGELPERRGYGAECGKLAAVVVFLLTLARHRTSNNKEIIS
LEDLGDIAVIVLAIISAQLLRCLYLLVEERRCLFSRYNGSIQRMLKACLP
DSPSTVISIKIGLFLISFAGSSFYWITSTEPRLDRSLFIVITFILSLDVL
HLSKAEISHLNETKNQHVADGLAWSYYFGYLKLILPRFPEMINLAHSEDD
TFKADGVDLRDQLSSEKLFIIIPKNCYTHAQLGQFDDRICRDGFSTPEFK
YTRAGVKERSYKNTAWRIDYPGEESLYVLMEYATPCLSMHDMMLHARSQF
DEEDLEAQVKEFSIKLQSILDSDEKCKGRYHLILCGDIRHQKLGDLIKEA
VQKEREEQKKGQ
Run BLAST on NCBI

transcript from alignment at scaffold_202:1206261..1207694+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051589 ID=TCONS_00051589|Name=TCONS_00051589|organism=Clytia hemisphaerica|type=transcript|length=1434bp|location=Sequence derived from alignment at scaffold_202:1206261..1207694+ (Clytia hemisphaerica)
ACATGGATAAATCTTTAAAAGTTAACAACTTCTTTGGCGAGCTTCCTGAG
CGACGTGGTTACGGTGCAGAATGCGGTAAACTTGCTGCAGTTGTTGTGTT
TCTTTTAACGCTGGCAAGACATCGAACATCGAACAACAAGGAGATTATAT
CATTAGAAGATCTTGGTGATATTGCTGTTATTGTCTTAGCAATAATCTCT
GCACAGCTCTTACGATGCCTTTATTTGCTGGTTGAGGAAAGACGATGTTT
GTTTTCGAGATATAATGGCTCCATACAACGAATGCTGAAAGCTTGTTTAC
CAGACTCTCCTAGCACAGTCATCAGTATCAAGGTAGGTCTTCTGATTTGA
TCTCCATGATTTGGTGTATTTTTCAGGCAGTTGCTGTGAAGTTTTAGGAG
ACATTTCTGtttgctgttttttttcttctaaactTACAAACgaacttaaa
aatgaaaatgtcctcttaccaaaataagttcctcgCCACAAACAATTCTG
TTATTCATCAGCTCTTGAAAACTAAACTGAAATATACTGACAGCTGATAA
TCACGGGAACAGATAGCAGTCAAAACTAGAGAGAAATCAAACTCGATCAT
TCAATATGGCTAACAACATTTTTTATACTTTCTTCTACTTTTAGATTGGT
TTGTTCCTCATTTCATTCGCTGGTTCATCTTTCTATTGGATCACATCAAC
TGAACCTCGTTTGGATCGCTCTCTCTTCATAGTAATCACTTTTATCTTAT
CCCTGGATGTCCTTCATTTATCCAAAGCTGAGATCTCACACCTCAATGAA
ACCAAAAACCAACATGTTGCTGATGGCCTTGCTTGGAGTTATTACTTTGG
ttatttgaaattgattttaCCAAGGTTTCCAGAGATGATTAATTTAGCCC
ATAGCGAAGATGATACATTCAAAGCAGATGGTGTTGATCTACGTGACCAA
TTATCGTCAGAAAAGCTGTTCATTATTATCCCAAAGAATTGCTATACCCA
TGCACAACTTGGTCAGTTTGATGATCGAATCTGTAGAGATGGTTTTAGCA
CGCCAGAATTCAAGTACACCAGAGCTGGCGTCAAAGAGAGGTCATACAAG
AATACCGCATGGAGAATTGACTACCCTGGAGAAGAATCACTGTATGTTCT
AATGGAATATGCGACACCTTGTTTATCTATGCACGATATGATGCTACATG
CTCGTTCccagtttgatgaagaagatttGGAAGCACAAGTGAAGGAATTC
TCAATCAAACTACAATCGATTTTGGACAGCGATGAAAAATGTAAAGGTCG
ATATCATTTGATATTGTGTGGTGATATTAGACATCAGAAACTTGGTGATC
TAATTAAAGAAGCTGTGCAAAAAGAACGAGAAGAACAAAAGAAAGgacaa
taatttgaaaattatgtTTTAGTATTCCCATGAC

Coding sequence (CDS) from alignment at scaffold_202:1206261..1207694+

>TCONS_00051589 ID=TCONS_00051589|Name=TCONS_00051589|organism=Clytia hemisphaerica|type=CDS|length=2178bp|location=Sequence derived from alignment at scaffold_202:1206261..1207694+ (Clytia hemisphaerica)
ATGGATAAATCTTTAAAAGTTAACAACTTCTTTGGCGAGCTTCCTGAGCG
ACGTGGTTACGGTGCAGAATGCGGTAAACTTGCTGCAGTTGTTGTGTTTC
TTTTAACGCTGGCAAGACATCGAACATCGAACAACAAGGAGATTATATCA
TTAGAAGATCTTGGTGATATTGCTGTTATTGTCTTAGCAATAATCTCTGC
ACAGCTCTTACGATGCCTTTATTTGCTGGTTGAGGAAAGACGATGTTTGT
TTTCGAGATATAATGGCTCCATACAACGAATGCTGAAAGCTTGTTTACCA
GACTCTCCTAGCACAGTCATCAGTATCAAGATTGGTTTGTTCCTCATTTC
ATTCGCTGGTTCATCTTTCTATTGGATCACATCAACTGAACCTCGTTTGG
ATCGCTCTCTCTTCATAGTAATCACTTTTATCTTATCCCTGGATGTCCTT
CATTTATCCAAAGCTGAGATCTCACACCTCAATGAAACCAAAAACCAACA
TGTTGCTGATGGCCTTGCTTGGAGTTATTACTTTGGttatttgaaattga
ttttaCCAAGGTTTCCAGAGATGATTAATTTAGCCCATAGCGAAGATGAT
ACATTCAAAGCAGATGGTGTTGATCTACGTGACCAATTATCGTCAGAAAA
GCTGTTCATTATTATCCCAAAGAATTGCTATACCCATGCACAACTTGGTC
AGTTTGATGATCGAATCTGTAGAGATGGTTTTAGCACGCCAGAATTCAAG
TACACCAGAGCTGGCGTCAAAGAGAGGTCATACAAGAATACCGCATGGAG
AATTGACTACCCTGGAGAAGAATCACTGTATGTTCTAATGGAATATGCGA
CACCTTGTTTATCTATGCACGATATGATGCTACATGCTCGTTCccagttt
gatgaagaagatttGGAAGCACAAGTGAAGGAATTCTCAATCAAACTACA
ATCGATTTTGGACAGCGATGAAAAATGTAAAGGTCGATATCATTTGATAT
TGTGTGGTGATATTAGACATCAGAAACTTGGTGATCTAATTAAAGAAGCT
GTGCAAAAAGAACGAGAAGAACAAAAGAAAGgacaataaATGGATAAATC
TTTAAAAGTTAACAACTTCTTTGGCGAGCTTCCTGAGCGACGTGGTTACG
GTGCAGAATGCGGTAAACTTGCTGCAGTTGTTGTGTTTCTTTTAACGCTG
GCAAGACATCGAACATCGAACAACAAGGAGATTATATCATTAGAAGATCT
TGGTGATATTGCTGTTATTGTCTTAGCAATAATCTCTGCACAGCTCTTAC
GATGCCTTTATTTGCTGGTTGAGGAAAGACGATGTTTGTTTTCGAGATAT
AATGGCTCCATACAACGAATGCTGAAAGCTTGTTTACCAGACTCTCCTAG
CACAGTCATCAGTATCAAGATTGGTTTGTTCCTCATTTCATTCGCTGGTT
CATCTTTCTATTGGATCACATCAACTGAACCTCGTTTGGATCGCTCTCTC
TTCATAGTAATCACTTTTATCTTATCCCTGGATGTCCTTCATTTATCCAA
AGCTGAGATCTCACACCTCAATGAAACCAAAAACCAACATGTTGCTGATG
GCCTTGCTTGGAGTTATTACTTTGGttatttgaaattgattttaCCAAGG
TTTCCAGAGATGATTAATTTAGCCCATAGCGAAGATGATACATTCAAAGC
AGATGGTGTTGATCTACGTGACCAATTATCGTCAGAAAAGCTGTTCATTA
TTATCCCAAAGAATTGCTATACCCATGCACAACTTGGTCAGTTTGATGAT
CGAATCTGTAGAGATGGTTTTAGCACGCCAGAATTCAAGTACACCAGAGC
TGGCGTCAAAGAGAGGTCATACAAGAATACCGCATGGAGAATTGACTACC
CTGGAGAAGAATCACTGTATGTTCTAATGGAATATGCGACACCTTGTTTA
TCTATGCACGATATGATGCTACATGCTCGTTCccagtttgatgaagaaga
tttGGAAGCACAAGTGAAGGAATTCTCAATCAAACTACAATCGATTTTGG
ACAGCGATGAAAAATGTAAAGGTCGATATCATTTGATATTGTGTGGTGAT
ATTAGACATCAGAAACTTGGTGATCTAATTAAAGAAGCTGTGCAAAAAGA
ACGAGAAGAACAAAAGAAAGgacaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032670XLOC_032670Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051589-proteinTCONS_00051589-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051589-exon-scaffold_202-1491911889:1206261..1206592TCONS_00051589-exon-scaffold_202-1491911889:1206261..1206592Clytia hemisphaericaexon
TCONS_00051589-exon-scaffold_202-1510915933:1206261..1206592TCONS_00051589-exon-scaffold_202-1510915933:1206261..1206592Clytia hemisphaericaexon
TCONS_00051589-exon-scaffold_202-1575043694:1206261..1206592TCONS_00051589-exon-scaffold_202-1575043694:1206261..1206592Clytia hemisphaericaexon
TCONS_00051589-exon-scaffold_202-1491911889:1206905..1207694TCONS_00051589-exon-scaffold_202-1491911889:1206905..1207694Clytia hemisphaericaexon
TCONS_00051589-exon-scaffold_202-1510915933:1206905..1207694TCONS_00051589-exon-scaffold_202-1510915933:1206905..1207694Clytia hemisphaericaexon
TCONS_00051589-exon-scaffold_202-1575043694:1206905..1207694TCONS_00051589-exon-scaffold_202-1575043694:1206905..1207694Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1206261..1207694 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.154559	0	0	0	0.747595	0.374387	1.61504	1.9102	2.19498	14.7365	2.16297	2.28626	10.9655	9.79416	2.64391	1.9532	0.304729	0.330588	3.64467	5.7982	0.168573	0	0.449577	0.397058	6.48684	8.30498	1.87828	1.66033	0.859106	0.450786
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029158STING
Vocabulary: Biological Process
TermDefinition
GO:0032481positive regulation of type I interferon production
GO:0002218activation of innate immune response
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002218 activation of innate immune response
biological_process GO:0032481 positive regulation of type I interferon production
Blast
[Close]
BLAST of TCONS_00051589 vs. Swiss-Prot (Human)
Match: STING (Stimulator of interferon genes protein OS=Homo sapiens GN=TMEM173 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.674e-26
Identity = 83/260 (31.92%), Postives = 128/260 (49.23%), Query Frame = 3 
Query:  228 LVEERRCLFSRYNGSIQRMLKACL--PDSPSTVISIKIGLF--LISFAGSSFYWITSTEPRLDRSLFIVITFILSLDVLHLSKAEISHLNETKNQHVADGLAWSYYFGYLKLILPRFPEMINLAHSEDDTFKADGVDLRDQLSSEKLFIIIPKNCYTHAQLGQFDDRICRDGFSTPEFKYTRAGVKERSYKNTAWRIDYPGEESLYVLMEYATPCLSMHDMMLHARSQFDEEDLEAQVKEFSIKLQSIL----DSDEKCK 983
            L EE R + SRY GS  R ++ACL  P     ++ + I  +  L +  G  F W+ +    L ++L I+      L +  L+ AEIS + E  N +VA GLAWSYY GYL+LILP     I        T+     +L     S++L+I++P +C     L   D  I R     P+     AG+K+R Y N+ + +   G+ +   ++EYATP  ++  M  ++++ F  ED   Q K F   L+ IL    +S   C+
Sbjct:   66 LAEELRHIHSRYRGSYWRTVRACLGCPLRRGALLLLSIYFYYSLPNAVGPPFTWMLALL-GLSQALNIL------LGLKGLAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQARIR-------TYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNI-RFLDKLPQQTGDHAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCR 310
The following BLAST results are available for this feature:
BLAST of TCONS_00051589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STING6.674e-2631.92Stimulator of interferon genes protein OS=Homo sap... [more]
back to top