|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051608 ID=TCONS_00051608|Name=TCONS_00051608|organism=Clytia hemisphaerica|type=transcript|length=5029bpRun BLAST on NCBI protein sequence of TCONS_00051608-protein >TCONS_00051608-protein ID=TCONS_00051608-protein|Name=TCONS_00051608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1037bp MDIYNFIYVVILIFNVLLPNDGVRAERSCTIKEKRLDCTKLNMTVFESTIRun BLAST on NCBI transcript from alignment at scaffold_202:240399..258128- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051608 ID=TCONS_00051608|Name=TCONS_00051608|organism=Clytia hemisphaerica|type=transcript|length=17730bp|location=Sequence derived from alignment at scaffold_202:240399..258128- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_202:240399..258128- >TCONS_00051608 ID=TCONS_00051608|Name=TCONS_00051608|organism=Clytia hemisphaerica|type=CDS|length=56052bp|location=Sequence derived from alignment at scaffold_202:240399..258128- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051608 vs. Swiss-Prot (Human)
Match: LRIG2 (Leucine-rich repeats and immunoglobulin-like domains protein 2 OS=Homo sapiens GN=LRIG2 PE=2 SV=3) HSP 1 Score: 284.263 bits (726), Expect = 1.862e-78 Identity = 227/748 (30.35%), Postives = 374/748 (50.00%), Query Frame = 3
Query: 495 CTIKEKRLDCTKLNMTVFE----STIFPTNIEHIVLDNNKLTEFPNLEKFPNLKSISISHNLLTSLKNFGSFL-HLELLNLSHNQLENLDGLFNSTLTKLQKLFISHNQLEKIDKIFQSSFPNLQ--SLDASHNKIKQL--------------IGSRRRSRSL-------FPNLKYLALNNNEVSYVKYF-FDHLSSTETIILSYNKLQKLTNEHFITLVQRNNLKELYLDHNLLKSI-ELWF---RFLIKLDLSHNRLETFKNDAF-YLESLTEMDLSGNKIAFPSKDLFSKTQAMARXXXXXXXXXXXXXXXFMYLQNLKYLDLSTNNISVGMKEFDKVFLWLKNLKTLNIRRNKILLLPTNSFPGLGALEVLDLAGNDIKYIERNALSNLKNLVELNIDTRDLDCDCSITWFRDWLSLQTTLIKKSISGVCASPPWLRNKNAMTILDSELTCVKHNKDYTIRPKFVIQPTSKYIKIHG-NVSLECVATSSVENLILINWYLDGQPVHHRKTVESKLQYVR--ANLYKKSSTLLLNDIRHDERGSYWCDAVNIYGSRRSKEANVTIVVPPTISKRPQPKIIKRTGDDVRLPCSAEGIPAPLISFKKITGDETAWKYATINRRIHYEKETFSFIVRDLKVEDSGFYACSASSRAGKVNATVQLVVIAKPSFIRPMKSKRVPPGTVAVLDCIISGNPRPHIQWFKDNHMLRPSKS--ITLSNQMMVINNFNERDVGSYSCHASNDLGS 2621
C+ + LDC++ + S + P + + +N+L+ + + L+ + +++N LT + FG ++ LL+L HN + ++ L+ L +S N I +I SSFP +Q L+ S+N+I L + R S+ P+L++L L N + V+ F L S ++ + N + KL + F L NN++EL L+HN L + + W R L +L +S N +E DA+ + + L+E+DLS N++ + F + RLNL +N + +++ F +L NL+ LDL N IS +++ + F L +L L ++ N+I + +F GL +LE LDL N I I+ NA S +L EL ++T L CDC + W WL + S++ CA P WL ++ + + + C D ++P+ P + I + G NV+L C A SS ++ + W D + ++ T E+ ++Y + + +S L L ++ + G Y C N +GS S++A +T+ P+ K P I RTG RL C+AEG PAP IS++K G + A RR+H E F + ++K+ED G Y+C A + AG ++A L V+ PSFIRP++ K V G AVL CI G+P P + W KD+ L ++ +NQ+++I + D G Y+C SN LG+
Sbjct: 47 CSCRIPLLDCSRRKLPAPSWRALSGLLPPDTAILDFSHNRLSNWNISLESQTLQEVKMNYNELTEIPYFGEPTSNITLLSLVHNIIPEINAQALQFYPALESLDLSSN---IISEIKTSSFPRMQLKYLNLSNNRITTLEAGCFDNLSSSLLVVKLNRNRMSMIPPKIFKLPHLQFLELKRNRIKIVEGLTFQGLDSLRSLKMQRNGISKLKDGAFFGL---NNMEELELEHNNLTRVNKGWLYGLRMLQQLYVSQNAIERISPDAWEFCQRLSELDLSYNQLTRLDESAFVGLSLLERLNLGDNRVTHIADGVFRFLSNLQTLDLRNNEISWAIEDASEAFAGLTSLTKLILQGNQIKSITKKAFIGLESLEHLDLNNNAIMSIQENAFSQ-THLKELILNTSSLLCDCHLKWLLQWLVDNN--FQHSVNVSCAHPEWLAGQSILNVDLKDFVC-----DDFLKPQIRTHPET-IIALRGMNVTLTCTAVSSSDSPMSTVWRKDSEILYDVDT-ENFVRYWQQAGEALEYTSILHLFNVNFTDEGKYQCIVTNHFGSNYSQKAKLTVNEMPSFLKTPMDLTI-RTGAMARLECAAEGHPAPQISWQKDGGTDFP---AARERRMHVMPEDDVFFIANVKIEDMGIYSCMAQNTAGGLSANASLTVLETPSFIRPLEDKTVTRGETAVLQCIAGGSPAPRLNWTKDDGPLLVTERHFFAAANQLLIIVDAGLEDAGKYTCIMSNTLGT 774 The following BLAST results are available for this feature:
BLAST of TCONS_00051608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.