TCONS_00051623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051623
Unique NameTCONS_00051623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051623 ID=TCONS_00051623|Name=TCONS_00051623|organism=Clytia hemisphaerica|type=transcript|length=1850bp
tttcagataaaaataaaaatgaaacaatgaaaaaatgaagttaaCACAAT
aacacaaagaaaaatacaataaaaagtaacaaaaagaTACAAGAAGGTGA
ATGACATACATGAGTTGACACAATGAGGATAAAACGGTTAAAACATTGCA
AGAAGTATGTGAACTTCTACAAAACTACATACGGCTTTAGAGAGCCATAC
CAAATCTTGGttgACCTGACATTTTGTCAATATGCATTGACGTACAAAGT
CAACATCAAAGAACAAGTACCGAAATACATCGAAGGAGAATCGCAATTAT
TTAGCACAAGCTGTATATTGGAGGAAGGCAAACAATTGGGAAAACAATTA
GGTGGTGCAGTACACATATGTAAGCAATTCAAATTGAGAAAATGTGGACA
TAGTAAAGCGGTTCCCGCACAAGAATGCATCCTTTCAATGATAGgTGAAA
CGAATGACAATCATTTCTTTGTTGCAAGCCAAGATTCTGAATTAAGAGAT
CAGCTCAGAACGATTCCAGGTGTTCCATTATTGAGAATTCATTACAATGC
ACTTGTGTTGGAGAAACCTTCCAAAGACTCCGTCACTGAAGCTCAAAAGA
TCGATTCTGTCAAAGTGAGCGCCAGTGGTTACGAAAAAGAGCGACTCGAC
caattaaagaaaatgaaaggttTGGCTGAAGATGTTGGTGTTGAAGAGCA
GCTCAGAAAACCGAAGAAAGTGAAAGGTGTCAATCCATTGGCTgctaaga
aaaagaaagcaaaaaatgGCGGTGCTTTCGGTAAACAAACTGACCCTTCA
AAgAAACGCCATCGTAAAAAGACACGCGTCGCACAACACGTTCTGGATGA
ACTCAAAAAACAAAGTGATGGACAACAAAATATAACTTCAAGTTGATGAC
AACATCCTTTCTAACCCTTTCGCCAATACAATAATGTATCAAATGTGAGc
ttttgaaagaattaaaaacAGATTTTGAATGAAGAGGCCCTTACCTCGGT
TGTTTCAAAGAATATTGGttgtcaaaaaatcgaatacaattcatgatatt
catgacgtattgttttctacggaaatactccggttttagccagtagtggc
aaattgaAACTACACAatagttgtataaaatttgccactaatGGCAAAAA
CTGGgatctttccgtagaaaacattacgtcatgaatatcatgaattttat
aACAATCGGTAATGAGAAATATTGGTTGTGGTACTGATGTTGTGCTCAAA
AACACGAAACACACGCACAACATAAACACTTTGTATTCTTCTTGAGATGA
TCAATTGTGTCCTATCTTTAAATGGACGAATGAACTCTTTTAATCGACTG
TTGACAAAGATTCACCAAACTGTTTATGAGACAATTTTTACATCACTGGC
aagaaatttttaacaacaGCAGACGATGCGGCTAATCTACAATTTGTGGG
TGGTGTTGGATGTAAGAAATGTTGCGACGATATTAAATGGTTGCTCTGGC
TTTGTCTTGTTCGTCATAATGATTTTTGCACCGAACCTTGGAGCTGTAGA
AGAGATTGCAGTGTCAtggattttcaaaatatggctAAATGATACTATTT
TTATTGTCTACTCTCAAAAATAAAGTTGAGTTTTTTAAATAGATGGTTTT
TAGGAAAAGTGCAGTTTTCTGTCAACCTTTTATATCGCTATTATAAAAAT
TCCACTATATCCGTTTTACGATGCCGACCTGCCTACACTAAATCATTTTC
ACGATGttcacatacacgttttttatgataatatccaaattttttgaaac
ttttagatgttcttaactttttcagctttaagcctaaaattgttctaaac
Run BLAST on NCBI

protein sequence of TCONS_00051623-protein

>TCONS_00051623-protein ID=TCONS_00051623-protein|Name=TCONS_00051623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MRIKRLKHCKKYVNFYKTTYGFREPYQILVDLTFCQYALTYKVNIKEQVP
KYIEGESQLFSTSCILEEGKQLGKQLGGAVHICKQFKLRKCGHSKAVPAQ
ECILSMIGETNDNHFFVASQDSELRDQLRTIPGVPLLRIHYNALVLEKPS
KDSVTEAQKIDSVKVSASGYEKERLDQLKKMKGLAEDVGVEEQLRKPKKV
KGVNPLAAKKKKAKNGGAFGKQTDPSKKRHRKKTRVAQHVLDELKKQSDG
QQNITSS
Run BLAST on NCBI

transcript from alignment at scaffold_202:419590..425122-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051623 ID=TCONS_00051623|Name=TCONS_00051623|organism=Clytia hemisphaerica|type=transcript|length=5533bp|location=Sequence derived from alignment at scaffold_202:419590..425122- (Clytia hemisphaerica)
TTTCAGATAAAAATAAAAATGAAACAATGAAAAAATGAAGTTAACACAAT
AACACAAAGAAAAATACAATAAAAAGTAACAAAAAGATACAAGAAGGTGA
ATGACATACATGAGTTGACACAATGAGGATAAAACGGTTAAAACATTGCA
AGAAGTATGTGAACTTCTACAAAACTACATACGGCTTTAGAGAGCCATAC
CAAATCTTGGGTAAGTGAAATTTTTCTTAAATCTTGGCACCAAGATTCTG
AATGAAATTACAATTTTTGTTGAGCTATTCCGATGATTGTAATGTTTTTT
ACACTATTTCCAAAGAACCGGCAAATTTTTGTTGAACTTCGGCCATTCTT
ATTTTTCCTAATATTGTTCTCATCCTGTTTATGTACAAGATTCCCAAGAT
TATAAGAAAGCTACAACGAGATAAACTTTCGTGGGGATTAAATATCGCGG
TTGAGCCCCTGCGAAATTTTAAGATTTTGTGGATGTGGGGTTTCTTGATT
TTCACGCAATAAAAGATGAAATTTTTCGAAAAGGGTCAAAACCGTGAAAT
AAAATTTTTCCAGGAAAACATTAACAAAGCTTCCTTTTAAATTGAATAAA
ATATTTTGTAATAGACTGGGGTGATATGTAATACAATATTAAAAGTTGAA
TTCGAATTTTTAACGGGAATTTGATTTCGTGGATGACACCCGAACCCGCG
AAGTCTGCGAATTTTAACCCCCGCGAAAATGTATCTCATTAAAGTTGCAC
CTCAATGCTAACTTCTTTATTTTCAGTTGACCTGACATTTTGTCAATATG
CATTGACGTACAAAGTCAACATCAAAGAACAAGTACCGAAATACATCGAA
GGAGAATCGCAATTATGTATCCTTTTCTCCTACCCTTTTAAAATATTGAT
ATTTTTTAGAGCATTCAGAAGTTTAGGTATAACGGGAGCCAAAGTTGGAG
CTGTCTGAATTGAGAACTTCGCAAATTCCTTCTGAACCAATCAGATTCGT
AAAATTATGTTAGGTCGACAATTACCTTTTATATTGGGTGTTTTAGAGTC
TTTAAAGCCTTATAATGTCCTTAACTTTGAATTGATACTGCAGTTGACGC
TATCTAATTCGATTTTCAAGGGGAATTGGATTTTCATCGAATAAGGGAGC
TGTCGAATAGTGGAGCTTCGTTCATGAGAGTTTCTTGTTGACGGTGACGG
CTTTCAATATTATCGAATAATGGAGCGTATCGAATAGTAGAACGTCGAAT
TAGAGAGCGTCAACTGTAATATGTTGTTTTTTTATAAAACTTGTATTACA
ATGATGAATTTAAAGATCAAAATCTCCTTAACCTTGAAAACTGTGCTTGA
AGTTAGCACAAGCTGTATATTGGAGGAAGGCAAACAATTGGGAAAACAAT
TAGGTGGTGCAGTACACATATGTAAGCAATTCAAATTGAGAAAATGTGGA
CATAGTAAAGCGGTTCCCGCACAAGAATGCATCCTTTCAATGATAGGTAA
ATTTTCCCAATTAACTTTCTTTTACCCTCCATCTATTTTAGCGTTTCTAA
TTTTATCCGCCTTCTATTTTCGCGCATCTTGCAAATTCTGAGATATTTCT
TTAGTGTAAAATGATCGAGCGATTCCTGCACAGCAATGCATTTTTTCAAT
GATAGGTAACTTTAAAGAATTTTTTTATGATTATAAATGAAGAAAATGCG
CCTCTTATGCTTTTATTCTCTAAATTTATTCGCACGCACTTATATATATT
TTCGCGTATTTTGTAAATTCTGAGATATTTTTTTAGTGTTTCAATGAAAA
TATAAGTAAAGACAAAAACATTTTCGCGCACGTTTTATACGCAAAAATAA
AGGTGCGTGAACACAATATCAACTCTTTTTAGAAAATTTGTGTTATTCAT
CAATTTATATAATTTTCAAGCAATTTCTGCGTAGTATTTTGCGCATTAAG
CTCTATCCAAGATGTTAGTGGGAAGGGGGGTCACGGTTGGTAACAAGGAG
AACTGCTCCCTTTTTCTTGTCCAGAATAGCGAAATTCGTAAGGTCTACTG
TTGGAGAATAAATATTGGATTTAAATGTCCGAAAAAAAACGGGGTTGAGA
GAGAAACTGGTCGGATATTGCGAATCACTCAAAATTTCACGAATTTTCGA
CGAAAATATCAATTCAAAGAAATTTTCTTCTGCGGAAATCCGGTTATTCC
TTTTGACGGTGGGGAAGGGAAAGTGGAAAATGGTGGAAACCCCTTTTTGG
TTGTGTATTGATTTTAATTATTTTCTATTTTTCTAGGTGAAACGAATGAC
AATCATTTCTTTGTTGCAAGCCAAGATTCTGAATTAAGAGATCAGCTCAG
AACGATTCCAGGTATAGTTACTTTTACGCAGTGATGCGCGTATTTTATTC
ACTTGAAAAATAACAGAAAACATATCGAATTTTCAATTTTAATTCTATTG
AAACCAGCTCATCAAGAGCGTCATTCTAGTCCATTAAGGTACGAAGCTAC
TATTATAGTGTTAACTTTACGATGCTTTTAGGTGTTCCATTATTGAGAAT
TCATTACAATGCACTTGTGTTGGAGAAACCTTCCAAAGACTCCGTCACTG
AAGCTCAAAAGGTTTGAATGTCCATGCATTAAAAAAAGTTTTTTTTTCGG
TGGATACGCGATATTGAAAAACTGCAATCTAATCTCTCCTTTTCCCCGTG
AATCATCCGAAATCTGCGAACCCCCCCCCTCCTCCAAAAAAAAAATAATT
CTACTTGTAAAAGTGAAGATCATACCTGTCTGTGTTGTCTGTATTATTGT
TGTTGCGTGTAGTGATGTTCAAGAGCAACTCTACTTGTAAGATTCATATC
ACTTTATTGGTGCATTTACTAACTACACAAACATAAAATACTATGCTAAA
AGAAATATAAACCTCTTTAAGTACTCTAAAAACATCAAAACCACGATAAA
AATACAAAAATCCAGAGCAAGTCTGACAGCATGATCGAATCTGCCATTTT
GAAATTCGAGCAATGTTTACGAATGCTTGGTCCCACCTACCTTGCACTTG
TAGACTGGAATCATTAAATTTTATTTTAGCGAGTGAGTCCATATTTTAGA
ATCTTCGAGAATGTTCTAGAAGTTTCAACTACTTTCGTTTTCTTTTTTTT
CCGCACCGCCGCCACCGCGAAAGCCTATTGTAGTACTTTCGCTATGCGAA
ATTAACAAAAAAAACGGTGATTACGTTGATTTTCAACCTACCAATGTTCA
TTTTAATATCGACATTTTTTTCTGGCACCAAAAAACCAAAAAAATTCAGT
TCGCCGCCTCAAGTACATATTGACGCCAATCAATACACTGCACTTGCTAA
GAATTCGCCGGCCTAAAATCTAGAAATCGCCAGAGTTAATTTTTCATTCG
CCAGCCTACCAAAAACAAAGCAAAACCTCTGAAAAAGTTATTAAAACGTT
CAGAGCGTTTATTCGAAGTAACACGGTATACAACGTAACACAAACACAAA
CAAAAATAGTTCACCACTCCTTGCCATAGATCGATTCTGTCAAAGTGAGC
GCCAGTGGTTACGAAAAAGAGCGACTCGACCAATTAAAGAAAATGAAAGG
TTTGGCTGAAGATGTTGGTGTTGAAGAGCAGCTCAGAAAACCGAAGAAAG
TGAAAGGTGTCAATCCATTGGCTGCTAAGAAAAAGAAAGCAAAAAATGGC
GGTGCTTTCGGTAAACAAACTGACCCTTCAAAGGTAATGTTTTTATTTCA
ACATTTTTTTTCAGTTGGTTCTCAATAACTTGAAGGTCAATGGTAAATCG
TGGATAATTCGCGCGATAGATGGGGGTTATCTTAGGGACAAGAACAATCG
TTGGGGTTAGTCGGTAGTAACATGACAATAGATTTCTGGTAGAGAAAATT
TCATTTTGAATTTCGTCCGGGTCAACCCTTGCCACGTGAGGGGATTAGAG
TACCATGACTGAAGTATAAGTGTATATGGAGATATTCCAGTCTCGGTGGT
GTGCTATCAACACTTGTCAGTCCTGATCTTGTGAGGAGTTCAACGTTTCC
CGTTTGTCGGTGTGCCTATACACCATCAACTCTATTTGTCGTGAGCTAGA
TAGAGCTGAAAGAGTCTGGTGAGCGCTTTCAATGTTCCTACCGGGCGCGC
TGATTTTGATGGTTAGTTAATAAGGGCGTTACTGCGTGATATGGAAAAAA
ATATATATATTTTTACTGGGCCAAATAACTTTAAATAAAAATGCAAAGAC
GAAAGATACAAATTTTTGCATTTTTTGACGTTTCGATGACTTCTTTTCAT
CATGATCATCACAACACAATACTATATGAAATTTTTTTTTTCTACAAACT
TGAAACTAGCACAAATTTATGATAAATCACAGCAATAATTTTTTCCTTTG
GAAAATTTTGATAGTTTTAGAGATTTCTGTGAAACTCATTAATTAATTTA
GGACCTTTTGAAATAAAGATATTTCTTATTCCACAGAAACGCCATCGTAA
AAAGACACGCGTCGCACAACACGTTCTGGATGAACTCAAAAAACAAAGTG
ATGGACAACAAAATATAACTTCAAGTTGATGACAACATCCTTTCTAACCC
TTTCGCCAATACAATAATGTATCAAATGTGAGCTTTTGAAAGAATTAAAA
ACAGATTTTGAATGAAGAGGCCCTTACCTCGGTTGTTTCAAAGAATATTG
GTTGTCAAAAAATCGAATACAATTCATGATATTCATGACGTATTGTTTTC
TACGGAAATACTCCGGTTTTAGCCAGTAGTGGCAAATTGAAACTACACAA
TAGTTGTATAAAATTTGCCACTAATGGCAAAAACTGGGATCTTTCCGTAG
AAAACATTACGTCATGAATATCATGAATTTTATAACAATCGGTAATGAGA
AATATTGGTTGTGGTACTGATGTTGTGCTCAAAAACACGAAACACACGCA
CAACATAAACACTTTGTATTCTTCTTGAGATGATCAATTGTGTCCTATCT
TTAAATGGACGAATGAACTCTTTTAATCGACTGTTGACAAAGATTCACCA
AACTGTTTATGAGACAATTTTTACATCACTGGCAAGAAATTTTTAACAAC
AGCAGACGATGCGGCTAATCTACAATTTGTGGGTGGTGTTGGATGTAAGA
AATGTTGCGACGATATTAAATGGTTGCTCTGGCTTTGTCTTGTTCGTCAT
AATGATTTTTGCACCGAACCTTGGAGCTGTAGAAGAGATTGCAGTGTCAT
GGATTTTCAAAATATGGCTAAATGATACTATTTTTATTGTCTACTCTCAA
AAATAAAGTTGAGTTTTTTAAATAGATGGTTTTTAGGAAAAGTGCAGTTT
TCTGTCAACCTTTTATATCGCTATTATAAAAATTCCACTATATCCGTTTT
ACGATGCCGACCTGCCTACACTAAATCATTTTCACGATGTTCACATACAC
GTTTTTTATGATAATATCCAAATTTTTTGAAACTTTTAGATGTTCTTAAC
TTTTTCAGCTTTAAGCCTAAAATTGTTCTAAAC

Coding sequence (CDS) from alignment at scaffold_202:419590..425122-

>TCONS_00051623 ID=TCONS_00051623|Name=TCONS_00051623|organism=Clytia hemisphaerica|type=CDS|length=5418bp|location=Sequence derived from alignment at scaffold_202:419590..425122- (Clytia hemisphaerica)
AAACGCCATCGTAAAAAGACACGCGTCGCACAACACGTTCTGGATGAACT
CAAAAAACAAAGTGATGGACAACAAAATATAACTTCAAGTTGAATCGATT
CTGTCAAAGTGAGCGCCAGTGGTTACGAAAAAGAGCGACTCGACCAATTA
AAGAAAATGAAAGGTTTGGCTGAAGATGTTGGTGTTGAAGAGCAGCTCAG
AAAACCGAAGAAAGTGAAAGGTGTCAATCCATTGGCTGCTAAGAAAAAGA
AAGCAAAAAATGGCGGTGCTTTCGGTAAACAAACTGACCCTTCAAAGGTG
TTCCATTATTGAGAATTCATTACAATGCACTTGTGTTGGAGAAACCTTCC
AAAGACTCCGTCACTGAAGCTCAAAAGGTGAAACGAATGACAATCATTTC
TTTGTTGCAAGCCAAGATTCTGAATTAAGAGATCAGCTCAGAACGATTCC
AGTTAGCACAAGCTGTATATTGGAGGAAGGCAAACAATTGGGAAAACAAT
TAGGTGGTGCAGTACACATATGTAAGCAATTCAAATTGAGAAAATGTGGA
CATAGTAAAGCGGTTCCCGCACAAGAATGCATCCTTTCAATGATAGTTGA
CCTGACATTTTGTCAATATGCATTGACGTACAAAGTCAACATCAAAGAAC
AAGTACCGAAATACATCGAAGGAGAATCGCAATTATATGAGGATAAAACG
GTTAAAACATTGCAAGAAGTATGTGAACTTCTACAAAACTACATACGGCT
TTAGAGAGCCATACCAAATCTTGGAAACGCCATCGTAAAAAGACACGCGT
CGCACAACACGTTCTGGATGAACTCAAAAAACAAAGTGATGGACAACAAA
ATATAACTTCAAGTTGAATCGATTCTGTCAAAGTGAGCGCCAGTGGTTAC
GAAAAAGAGCGACTCGACCAATTAAAGAAAATGAAAGGTTTGGCTGAAGA
TGTTGGTGTTGAAGAGCAGCTCAGAAAACCGAAGAAAGTGAAAGGTGTCA
ATCCATTGGCTGCTAAGAAAAAGAAAGCAAAAAATGGCGGTGCTTTCGGT
AAACAAACTGACCCTTCAAAGGTGTTCCATTATTGAGAATTCATTACAAT
GCACTTGTGTTGGAGAAACCTTCCAAAGACTCCGTCACTGAAGCTCAAAA
GGTGAAACGAATGACAATCATTTCTTTGTTGCAAGCCAAGATTCTGAATT
AAGAGATCAGCTCAGAACGATTCCAGTTAGCACAAGCTGTATATTGGAGG
AAGGCAAACAATTGGGAAAACAATTAGGTGGTGCAGTACACATATGTAAG
CAATTCAAATTGAGAAAATGTGGACATAGTAAAGCGGTTCCCGCACAAGA
ATGCATCCTTTCAATGATAGTTGACCTGACATTTTGTCAATATGCATTGA
CGTACAAAGTCAACATCAAAGAACAAGTACCGAAATACATCGAAGGAGAA
TCGCAATTATATGAGGATAAAACGGTTAAAACATTGCAAGAAGTATGTGA
ACTTCTACAAAACTACATACGGCTTTAGAGAGCCATACCAAATCTTGGAA
ACGCCATCGTAAAAAGACACGCGTCGCACAACACGTTCTGGATGAACTCA
AAAAACAAAGTGATGGACAACAAAATATAACTTCAAGTTGAATCGATTCT
GTCAAAGTGAGCGCCAGTGGTTACGAAAAAGAGCGACTCGACCAATTAAA
GAAAATGAAAGGTTTGGCTGAAGATGTTGGTGTTGAAGAGCAGCTCAGAA
AACCGAAGAAAGTGAAAGGTGTCAATCCATTGGCTGCTAAGAAAAAGAAA
GCAAAAAATGGCGGTGCTTTCGGTAAACAAACTGACCCTTCAAAGGTGTT
CCATTATTGAGAATTCATTACAATGCACTTGTGTTGGAGAAACCTTCCAA
AGACTCCGTCACTGAAGCTCAAAAGGTGAAACGAATGACAATCATTTCTT
TGTTGCAAGCCAAGATTCTGAATTAAGAGATCAGCTCAGAACGATTCCAG
TTAGCACAAGCTGTATATTGGAGGAAGGCAAACAATTGGGAAAACAATTA
GGTGGTGCAGTACACATATGTAAGCAATTCAAATTGAGAAAATGTGGACA
TAGTAAAGCGGTTCCCGCACAAGAATGCATCCTTTCAATGATAGTTGACC
TGACATTTTGTCAATATGCATTGACGTACAAAGTCAACATCAAAGAACAA
GTACCGAAATACATCGAAGGAGAATCGCAATTATATGAGGATAAAACGGT
TAAAACATTGCAAGAAGTATGTGAACTTCTACAAAACTACATACGGCTTT
AGAGAGCCATACCAAATCTTGGAAACGCCATCGTAAAAAGACACGCGTCG
CACAACACGTTCTGGATGAACTCAAAAAACAAAGTGATGGACAACAAAAT
ATAACTTCAAGTTGAATCGATTCTGTCAAAGTGAGCGCCAGTGGTTACGA
AAAAGAGCGACTCGACCAATTAAAGAAAATGAAAGGTTTGGCTGAAGATG
TTGGTGTTGAAGAGCAGCTCAGAAAACCGAAGAAAGTGAAAGGTGTCAAT
CCATTGGCTGCTAAGAAAAAGAAAGCAAAAAATGGCGGTGCTTTCGGTAA
ACAAACTGACCCTTCAAAGGTGTTCCATTATTGAGAATTCATTACAATGC
ACTTGTGTTGGAGAAACCTTCCAAAGACTCCGTCACTGAAGCTCAAAAGG
TGAAACGAATGACAATCATTTCTTTGTTGCAAGCCAAGATTCTGAATTAA
GAGATCAGCTCAGAACGATTCCAGTTAGCACAAGCTGTATATTGGAGGAA
GGCAAACAATTGGGAAAACAATTAGGTGGTGCAGTACACATATGTAAGCA
ATTCAAATTGAGAAAATGTGGACATAGTAAAGCGGTTCCCGCACAAGAAT
GCATCCTTTCAATGATAGTTGACCTGACATTTTGTCAATATGCATTGACG
TACAAAGTCAACATCAAAGAACAAGTACCGAAATACATCGAAGGAGAATC
GCAATTATATGAGGATAAAACGGTTAAAACATTGCAAGAAGTATGTGAAC
TTCTACAAAACTACATACGGCTTTAGAGAGCCATACCAAATCTTGGAAAC
GCCATCGTAAAAAGACACGCGTCGCACAACACGTTCTGGATGAACTCAAA
AAACAAAGTGATGGACAACAAAATATAACTTCAAGTTGAATCGATTCTGT
CAAAGTGAGCGCCAGTGGTTACGAAAAAGAGCGACTCGACCAATTAAAGA
AAATGAAAGGTTTGGCTGAAGATGTTGGTGTTGAAGAGCAGCTCAGAAAA
CCGAAGAAAGTGAAAGGTGTCAATCCATTGGCTGCTAAGAAAAAGAAAGC
AAAAAATGGCGGTGCTTTCGGTAAACAAACTGACCCTTCAAAGGTGTTCC
ATTATTGAGAATTCATTACAATGCACTTGTGTTGGAGAAACCTTCCAAAG
ACTCCGTCACTGAAGCTCAAAAGGTGAAACGAATGACAATCATTTCTTTG
TTGCAAGCCAAGATTCTGAATTAAGAGATCAGCTCAGAACGATTCCAGTT
AGCACAAGCTGTATATTGGAGGAAGGCAAACAATTGGGAAAACAATTAGG
TGGTGCAGTACACATATGTAAGCAATTCAAATTGAGAAAATGTGGACATA
GTAAAGCGGTTCCCGCACAAGAATGCATCCTTTCAATGATAGTTGACCTG
ACATTTTGTCAATATGCATTGACGTACAAAGTCAACATCAAAGAACAAGT
ACCGAAATACATCGAAGGAGAATCGCAATTATATGAGGATAAAACGGTTA
AAACATTGCAAGAAGTATGTGAACTTCTACAAAACTACATACGGCTTTAG
AGAGCCATACCAAATCTTGGAAACGCCATCGTAAAAAGACACGCGTCGCA
CAACACGTTCTGGATGAACTCAAAAAACAAAGTGATGGACAACAAAATAT
AACTTCAAGTTGAATCGATTCTGTCAAAGTGAGCGCCAGTGGTTACGAAA
AAGAGCGACTCGACCAATTAAAGAAAATGAAAGGTTTGGCTGAAGATGTT
GGTGTTGAAGAGCAGCTCAGAAAACCGAAGAAAGTGAAAGGTGTCAATCC
ATTGGCTGCTAAGAAAAAGAAAGCAAAAAATGGCGGTGCTTTCGGTAAAC
AAACTGACCCTTCAAAGGTGTTCCATTATTGAGAATTCATTACAATGCAC
TTGTGTTGGAGAAACCTTCCAAAGACTCCGTCACTGAAGCTCAAAAGGTG
AAACGAATGACAATCATTTCTTTGTTGCAAGCCAAGATTCTGAATTAAGA
GATCAGCTCAGAACGATTCCAGTTAGCACAAGCTGTATATTGGAGGAAGG
CAAACAATTGGGAAAACAATTAGGTGGTGCAGTACACATATGTAAGCAAT
TCAAATTGAGAAAATGTGGACATAGTAAAGCGGTTCCCGCACAAGAATGC
ATCCTTTCAATGATAGTTGACCTGACATTTTGTCAATATGCATTGACGTA
CAAAGTCAACATCAAAGAACAAGTACCGAAATACATCGAAGGAGAATCGC
AATTATATGAGGATAAAACGGTTAAAACATTGCAAGAAGTATGTGAACTT
CTACAAAACTACATACGGCTTTAGAGAGCCATACCAAATCTTGGAAACGC
CATCGTAAAAAGACACGCGTCGCACAACACGTTCTGGATGAACTCAAAAA
ACAAAGTGATGGACAACAAAATATAACTTCAAGTTGAATCGATTCTGTCA
AAGTGAGCGCCAGTGGTTACGAAAAAGAGCGACTCGACCAATTAAAGAAA
ATGAAAGGTTTGGCTGAAGATGTTGGTGTTGAAGAGCAGCTCAGAAAACC
GAAGAAAGTGAAAGGTGTCAATCCATTGGCTGCTAAGAAAAAGAAAGCAA
AAAATGGCGGTGCTTTCGGTAAACAAACTGACCCTTCAAAGGTGTTCCAT
TATTGAGAATTCATTACAATGCACTTGTGTTGGAGAAACCTTCCAAAGAC
TCCGTCACTGAAGCTCAAAAGGTGAAACGAATGACAATCATTTCTTTGTT
GCAAGCCAAGATTCTGAATTAAGAGATCAGCTCAGAACGATTCCAGTTAG
CACAAGCTGTATATTGGAGGAAGGCAAACAATTGGGAAAACAATTAGGTG
GTGCAGTACACATATGTAAGCAATTCAAATTGAGAAAATGTGGACATAGT
AAAGCGGTTCCCGCACAAGAATGCATCCTTTCAATGATAGTTGACCTGAC
ATTTTGTCAATATGCATTGACGTACAAAGTCAACATCAAAGAACAAGTAC
CGAAATACATCGAAGGAGAATCGCAATTATATGAGGATAAAACGGTTAAA
ACATTGCAAGAAGTATGTGAACTTCTACAAAACTACATACGGCTTTAGAG
AGCCATACCAAATCTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032684XLOC_032684Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051623-proteinTCONS_00051623-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051623-exon-scaffold_202-1575043694:424913..425122TCONS_00051623-exon-scaffold_202-1575043694:424913..425122Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1575043694:424257..424346TCONS_00051623-exon-scaffold_202-1575043694:424257..424346Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1575043694:423627..423770TCONS_00051623-exon-scaffold_202-1575043694:423627..423770Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1575043694:422762..422836TCONS_00051623-exon-scaffold_202-1575043694:422762..422836Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1575043694:422512..422591TCONS_00051623-exon-scaffold_202-1575043694:422512..422591Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1575043694:421390..421593TCONS_00051623-exon-scaffold_202-1575043694:421390..421593Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1575043694:419590..420636TCONS_00051623-exon-scaffold_202-1575043694:419590..420636Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1510915933:424913..425122TCONS_00051623-exon-scaffold_202-1510915933:424913..425122Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1510915933:424257..424346TCONS_00051623-exon-scaffold_202-1510915933:424257..424346Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1510915933:423627..423770TCONS_00051623-exon-scaffold_202-1510915933:423627..423770Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1510915933:422762..422836TCONS_00051623-exon-scaffold_202-1510915933:422762..422836Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1510915933:422512..422591TCONS_00051623-exon-scaffold_202-1510915933:422512..422591Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1510915933:421390..421593TCONS_00051623-exon-scaffold_202-1510915933:421390..421593Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1510915933:419590..420636TCONS_00051623-exon-scaffold_202-1510915933:419590..420636Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1491911889:424913..425122TCONS_00051623-exon-scaffold_202-1491911889:424913..425122Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1491911889:424257..424346TCONS_00051623-exon-scaffold_202-1491911889:424257..424346Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1491911889:423627..423770TCONS_00051623-exon-scaffold_202-1491911889:423627..423770Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1491911889:422762..422836TCONS_00051623-exon-scaffold_202-1491911889:422762..422836Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1491911889:422512..422591TCONS_00051623-exon-scaffold_202-1491911889:422512..422591Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1491911889:421390..421593TCONS_00051623-exon-scaffold_202-1491911889:421390..421593Clytia hemisphaericaexon
TCONS_00051623-exon-scaffold_202-1491911889:419590..420636TCONS_00051623-exon-scaffold_202-1491911889:419590..420636Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:419590..425122 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
58.3928	59.5744	111.6	114.781	74.0643	54.6201	49.1049	51.0886	30.3675	29.3535	25.1904	22.7514	16.9074	17.996	21.6528	24.8562	27.1419	27.0388	8.34649	10.0475	16.0008	16.4652	25.2065	21.1891	23.6375	26.1142	10.0267	8.64161	14.9397	13.6808
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006984Fcf1/Utp23
IPR029060PIN_domain-like
Vocabulary: Cellular Component
TermDefinition
GO:0032040small-subunit processome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0032040 small-subunit processome
Blast
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BLAST of TCONS_00051623 vs. Swiss-Prot (Human)
Match: UTP23 (rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 3.246e-50
Identity = 90/207 (43.48%), Postives = 141/207 (68.12%), Query Frame = 3 
Query:  123 MRIKRLKHCKKYVNFYKTTYGFREPYQILVDLTFCQYALTYKVNIKEQVPKYIEGESQLFSTSCILEEGKQLGKQLGGAVHICKQFKLRKCGHSK-AVPAQECILSMIGETNDNHFFVASQDSELRDQLRTIPGVPLLRIHYNALVLEKPSKDSVTEAQKIDSVKVSASGYEKERLDQLKKMKGLAEDVGVEEQLRKPKKVKGVNPL 740
            M+I R KH KK++ F++  +G REPYQIL+D TFCQ AL  ++ ++EQ+P+Y+ GE+QL +T C+L+E + LGK L GA  I ++ ++R C H K AV   EC+LSM+ E N +H+FVA+QD  L  +++  PGVPL+ I  N +VL+KPS  ++   + ++S ++  S +EKE +  LK+ +GL ++   + + +K KK+ G NPL
Sbjct:    1 MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMGETQLCTTRCVLKELETLGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEEGNPHHYFVATQDQNLSVKVKKKPGVPLMFIIQNTMVLDKPSPKTIAFVKAVESGQL-VSVHEKESIKHLKEEQGLVKNTE-QSRRKKRKKISGPNPL 205
The following BLAST results are available for this feature:
BLAST of TCONS_00051623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UTP233.246e-5043.48rRNA-processing protein UTP23 homolog OS=Homo sapi... [more]
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