|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051652 ID=TCONS_00051652|Name=TCONS_00051652|organism=Clytia hemisphaerica|type=transcript|length=1582bpRun BLAST on NCBI protein sequence of TCONS_00051652-protein >TCONS_00051652-protein ID=TCONS_00051652-protein|Name=TCONS_00051652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp MTKPLPKKEGGGKGSSGKSEKRKGGGKKINDGGKVTKGHASELGIGQSLSRun BLAST on NCBI transcript from alignment at scaffold_202:941068..953459- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051652 ID=TCONS_00051652|Name=TCONS_00051652|organism=Clytia hemisphaerica|type=transcript|length=12392bp|location=Sequence derived from alignment at scaffold_202:941068..953459- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_202:941068..953459- >TCONS_00051652 ID=TCONS_00051652|Name=TCONS_00051652|organism=Clytia hemisphaerica|type=CDS|length=15660bp|location=Sequence derived from alignment at scaffold_202:941068..953459- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051652 vs. Swiss-Prot (Human)
Match: SUPT3 (Transcription initiation protein SPT3 homolog OS=Homo sapiens GN=SUPT3H PE=1 SV=2) HSP 1 Score: 218.779 bits (556), Expect = 1.148e-64 Identity = 115/246 (46.75%), Postives = 172/246 (69.92%), Query Frame = 1
Query: 169 ASELGIGQSLSGNKNQNNKLLSFHAEITGMMYAFGDCKKPAPESVTLVEEIVHHQMSSVLVQAMEVTAMRGGKFTSIDDILFLMRNNKTKLRRMIRYLRLKDLKSKTVKPTSPEDEDVLES-ISGDTSKADSGKRLKLAYDFISSIDSSGELLALFEEDDVIDEIKVIRAKRAERISCCLDSQGYLEYSEARQMSFSKKITKFKDWLGIGTNIDIKASTAVIEILSNLAYETVNEIVDLALLVKED 903
AS + S SG K +SF E+ MMY+ GD ++P E+ LVE++VH Q+ ++L QA EV+ +RG + + +D+LFLMR +K KLRR+++Y+ ++D KSK VK +++D+LE +SG ++ KR K+A DF++SID +GELLA+F EDD IDE+K R +RAER + +DS Y E+ E+RQ+SFSKK +KF+DWL ++++IK + +EIL+ LAYETV ++VDLALLV++D
Sbjct: 88 ASPMSTATSSSGRST--GKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGI--DEDDLLEDKLSGSN---NANKRQKIAQDFLNSIDQTGELLAMF-EDDEIDEVKQERMERAERQTRIMDSAQYAEFCESRQLSFSKKASKFRDWLDC-SSMEIKPNVVAMEILAYLAYETVAQLVDLALLVRQD 324 The following BLAST results are available for this feature:
BLAST of TCONS_00051652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.