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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051677 ID=TCONS_00051677|Name=TCONS_00051677|organism=Clytia hemisphaerica|type=transcript|length=1111bp
ataagaggccttttaaaaagattaatgtaaataaaagaagagtaaaaaaa
tgaaacaccataaaaataaaggaaaatgaTGCATGCACTTTAAAAATATA
GGATAATAAAACCTTAAGAATCTATATGAAAGAGTTTGTCTTGATATTTT
ACCCAAGAATTAATTTGAAACCTGTATATTATATGTGTATCCTGGTATAA
AAAAGATACATCTATAAACTAAAATATGATTACAAAAAGTTGTTGTTCTT
ATCAGCAGATTGAATGGAGTGTTGCATGAAGTGATTTAAAAACCCAAGCC
TAGATGTAAAGGATTCATCACAAACTGTACAACAATAACCATCGCTTTTG
TCATGATTGAACTCATCTGTAAGGActggaattttgaaatcatGCCTCTT
CAAGTGGGAAAGGTATGTGTTGCAATCTGGGATTAATTCCAAACAAGTTG
CACACTTAATTTGGTTGCTGTGTGAAGATTTGTAATGTAGGAAAAAGCCT
TCTGGTGATTTAAACAAGCTAAAGCAAACACTACATAaaataaaatgttc
ttgaaGATGTGTAATGAACTGCTTGATACCGAACAAATATTCACCACATG
TGGTACATAGAAATGGTCTCATGTCAGGAAAATGAGTGTAATAATGATTT
AAGAGATGATTATCCAGAGTGCTTCTTTTATCAAACTGCTTTGAACAGAA
ACCACATGCATATGTTGTTGATGCTATGGGCTCTGAAGTGTGTGCCATCT
CGTTATGAACATCTACTGCTTCCATTGATGGGAGTCGAATATTACAAAAA
CAACATACAATTACTGTAACATAGTAATGCATGGTCTGTAAGTGGTGACT
CAATTCTAAAGcagtttgaaagtttttgtttctTGGGCAGAGAACACATA
TATGATAAATACATTTTGGTTTTGTATGATTTTGAATTTCATCTTCTTCt
gtattcatttttatttctttcgcTTGTTTTCACTTTTGTTTAGTTTACCA
CTCTATTgcttttttgtcaataaatagAATAAAGATCTCTAGGGAAGCTA
CCTTTTAATCTTTCTCATCTGCAGATCACTAAAATTCACCCTGGAAAAGA
TACCCCAATTG Run BLAST on NCBI protein sequence of TCONS_00051677-protein >TCONS_00051677-protein ID=TCONS_00051677-protein|Name=TCONS_00051677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MNTEEDEIQNHTKPKCIYHICVLCPRNKNFQTALELSHHLQTMHYYVTVI
VCCFCNIRLPSMEAVDVHNEMAHTSEPIASTTYACGFCSKQFDKRSTLDN
HLLNHYYTHFPDMRPFLCTTCGEYLFGIKQFITHLQEHFILCSVCFSLFK
SPEGFFLHYKSSHSNQIKCATCLELIPDCNTYLSHLKRHDFKIPVLTDEF
NHDKSDGYCCTVCDESFTSRLGFLNHFMQHSIQSADKNNNFL Run BLAST on NCBI transcript from alignment at scaffold_202:23446..24556 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051677 ID=TCONS_00051677|Name=TCONS_00051677|organism=Clytia hemisphaerica|type=transcript|length=1111bp|location=Sequence derived from alignment at scaffold_202:23446..24556 (Clytia hemisphaerica)
CAATTGGGGTATCTTTTCCAGGGTGAATTTTAGTGATCTGCAGATGAGAA
AGATTAAAAGGTAGCTTCCCTAGAGATCTTTATTctatttattgacaaaa
aagcAATAGAGTGGTAAACTAAACAAAAGTGAAAACAAgcgaaagaaata
aaaatgaatacaGAAGAAGATGAAATTCAAAATCATACAAAACCAAAATG
TATTTATCATATATGTGTTCTCTGCCCAagaaacaaaaactttcaaactg
CTTTAGAATTGAGTCACCACTTACAGACCATGCATTACTATGTTACAGTA
ATTGTATGTTGTTTTTGTAATATTCGACTCCCATCAATGGAAGCAGTAGA
TGTTCATAACGAGATGGCACACACTTCAGAGCCCATAGCATCAACAACAT
ATGCATGTGGTTTCTGTTCAAAGCAGTTTGATAAAAGAAGCACTCTGGAT
AATCATCTCTTAAATCATTATTACACTCATTTTCCTGACATGAGACCATT
TCTATGTACCACATGTGGTGAATATTTGTTCGGTATCAAGCAGTTCATTA
CACATCttcaagaacattttatttTATGTAGTGTTTGCTTTAGCTTGTTT
AAATCACCAGAAGGCTTTTTCCTACATTACAAATCTTCACACAGCAACCA
AATTAAGTGTGCAACTTGTTTGGAATTAATCCCAGATTGCAACACATACC
TTTCCCACTTGAAGAGGCatgatttcaaaattccagTCCTTACAGATGAG
TTCAATCATGACAAAAGCGATGGTTATTGTTGTACAGTTTGTGATGAATC
CTTTACATCTAGGCTTGGGTTTTTAAATCACTTCATGCAACACTCCATTC
AATCTGCTGATAAGAACAACAACTTTTTGTAATCATATTTTAGTTTATAG
ATGTATCTTTTTTATACCAGGATACACATATAATATACAGGTTTCAAATT
AATTCTTGGGTAAAATATCAAGACAAACTCTTTCATATAGATTCTTAAGG
TTTTATTATCCTATATTTTTAAAGTGCATGCAtcattttcctttattttt
atggtgtttcatttttttactcttcttttatttacattaatctttttaaa
aggcctcttat Coding sequence (CDS) from alignment at scaffold_202:23446..24556 >TCONS_00051677 ID=TCONS_00051677|Name=TCONS_00051677|organism=Clytia hemisphaerica|type=CDS|length=729bp|location=Sequence derived from alignment at scaffold_202:23446..24556 (Clytia hemisphaerica)
atgaatacaGAAGAAGATGAAATTCAAAATCATACAAAACCAAAATGTAT
TTATCATATATGTGTTCTCTGCCCAagaaacaaaaactttcaaactgCTT
TAGAATTGAGTCACCACTTACAGACCATGCATTACTATGTTACAGTAATT
GTATGTTGTTTTTGTAATATTCGACTCCCATCAATGGAAGCAGTAGATGT
TCATAACGAGATGGCACACACTTCAGAGCCCATAGCATCAACAACATATG
CATGTGGTTTCTGTTCAAAGCAGTTTGATAAAAGAAGCACTCTGGATAAT
CATCTCTTAAATCATTATTACACTCATTTTCCTGACATGAGACCATTTCT
ATGTACCACATGTGGTGAATATTTGTTCGGTATCAAGCAGTTCATTACAC
ATCttcaagaacattttatttTATGTAGTGTTTGCTTTAGCTTGTTTAAA
TCACCAGAAGGCTTTTTCCTACATTACAAATCTTCACACAGCAACCAAAT
TAAGTGTGCAACTTGTTTGGAATTAATCCCAGATTGCAACACATACCTTT
CCCACTTGAAGAGGCatgatttcaaaattccagTCCTTACAGATGAGTTC
AATCATGACAAAAGCGATGGTTATTGTTGTACAGTTTGTGATGAATCCTT
TACATCTAGGCTTGGGTTTTTAAATCACTTCATGCAACACTCCATTCAAT
CTGCTGATAAGAACAACAACTTTTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051677-exon-scaffold_202-1491911889:23446..24556 | TCONS_00051677-exon-scaffold_202-1491911889:23446..24556 | Clytia hemisphaerica | exon |
| TCONS_00051677-exon-scaffold_202-1510915933:23446..24556 | TCONS_00051677-exon-scaffold_202-1510915933:23446..24556 | Clytia hemisphaerica | exon |
| TCONS_00051677-exon-scaffold_202-1575043694:23446..24556 | TCONS_00051677-exon-scaffold_202-1575043694:23446..24556 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:23446..24556 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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