TCONS_00051700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051700
Unique NameTCONS_00051700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051700 ID=TCONS_00051700|Name=TCONS_00051700|organism=Clytia hemisphaerica|type=transcript|length=2495bp
atttgttttcatttaataCATAATTATCTTACATAATATCGTAATACCAA
AATATACAatataaaaaactttatttgggcaaaaaaaaaacacctccata
tttattttctcctttccaaaattccataaaataattttgagaagaaaaac
ttttatcattatttacaaaatatttcagGAAGTATAATTCCCGGGAAGGG
GCCTAGTATTCAAGTTTTCTGGgttttttccagaaatagtttgTACCCCC
TATGCTGAGGAGCTGTGACGTTTAGGATGGTctggaaaattaagaattca
GGGGGTCTGGTTTTTCGACTGAAAAAATCCAGAGttgtcagtaaaatgag
gttgaaaatccagggtggtcaaaACGTGAGAAAAACAATCCAGGGTGtct
aaaaaaattggaaaaaaaatccaggTTCACATTCTCAAAAAAAACGCTCT
CTCAACATAGGGGCGGTACAaatttggaatagcccattctGGAATATAAC
CCATTTCCCATCATAAAAGCCAACCCTACCATGTTTTATAAGCTGTCTTA
TAATCATCTTTTCATCTCTCTTCGCTGTGAAAATTACTTAACTCTAATGT
GATGCTTATGCAAATCAGATTCTTGAAGAAGAATAATGGAAATCTTCTAA
GAAATAGAGTCTTTTATTTGGAACTTTTAGGATGCATGCATAGAAATGTT
CAAATGTTCTAAATCCAAATGATCCGTTCGAGTTATTtcaacacacacac
acacacaaggCGTTGGGTGGAATAAAAACTTTCCGAAATGCAGTCTGAAG
AATTACCATACACTTTCATAGACTCTTTACAGTTTCAACGTAAGTCGGTT
TTTAGCTTCAATTTTCGCTTTCAACTTGCATTTTCCATTACAAATCCATT
TATTTTTGGgataaaaattccattttttcATTAAGCGTTTGTGTCTCTAA
GTGTGCAAAGAGCCATACTATACTCATGTTATGAAATTGTTGTCATAGCT
CTTCCTACATTATGACAACGTACCATCTGTTTCAAGTCTGTTATTAGATA
TTTAGCAAGTGCACACAGAGCCTTAGCATCACCTCGTTCCTCCTTTTGGT
GCTCATATTGCAAACCTAAAACCCTATTTACACTGGTACTGAACCTTTAA
GTATCATCTGTTTCAAGTCCGCAGgaaattcttcattttcctcTACAAGG
GCTTTCGCTAATTGAGCGTTGGTTTGATTTCGAATGCTAAATAAAATAGC
TCTCGATTTTTCATGTTCGTATTTCTTCCTCAATTTCCATTCTTCGTATC
TTTTCCACATGAAGTAAACAACGAAACAAATAATGACGATAAATTCAAAC
GAACACATTGCGTATaggattttcagttttttagcgTCATCTTCGTCATT
TATCCGCTCTTGAACGATCACGACTTCAGTATGGTTGATCTGTTTTAATG
GAATTCGATCTGGGATTACTGACACCTCTGGCTTCTGTGTGTATCCCTGG
CAAATGTTTACTTCACAGGTCTGTCCTTTGTACCGTTCCTGACATGCGCA
CTTGAAGGATGTCTTATTACCAGTACATTTGCCCTGGTTTCGACAAGGAT
TTAAATCACACATTGAGCAATGGTCAAGTTCTTCGTGAGCATTCATAATC
TCAGTACTGTATGGTTCAAAATGATATGGCGTTTTACAATGTCCCCATAA
TTTATGtctcaaatgttgaaaattgattttataacCCATAGCATGCTTAC
AAGAGCAATCTAATGGGTTATTGAGTAGATTAATTCTTGTTTTGATTCTA
AAACCTTCAAAAGCTGATGATGGAATGACCTGGATTTGATTAGAACCAAG
TCCTAAATGTTCCATTCGCATTTGTGCAAAAACTTGACTGTCAATCTTCT
TTATTTCATTCctggtcaaaaataaatctttcaGAAACTTCAATTGTGGG
AAAACTCCGTTTTGTAGCGATTTCAATTCGTTGTCTTCTAAGTGAATCTC
GTAAATCGATAAAGCCAGCTTATCGAAAACTCCTGGTTGCAATTGTTGGA
TTCGATTCTGTTTTAGATCTAGATGTCCACATTTATCCAAACCAATAAAG
GATCCTTCTGTTAGCTCTGTGATTTGATTATTACTCAAAACTAATCGCCG
TAAATTCGAAAATCCACGGAAAGTAAATGTAGGTATTTTTGTAAAAGCGT
TATCTGAAATCTCCAGAGTCTCTAAATGCCTTAAGTTTGTCATTGTGTTC
TCTGAGATTGTTTCTAACTCATTGGATGATAACACTAGCTCTGTGATATC
CTTTGGAATTTGAAGATTCGCCAGATCGTCTTCCTTGAGAATTACATTTT
GACAAGTCATTTTGCGATCCATACAAAAACATTCTGTCGGACAGGACAAT
GTCTGTCGGACGATTGCAAATATCAATCCAAAGTATACGGTTATCTTCAT
CTTCTTTATATTTAATTTGCTgtcttttgttttgttaattacctg
Run BLAST on NCBI

protein sequence of TCONS_00051700-protein

>TCONS_00051700-protein ID=TCONS_00051700-protein|Name=TCONS_00051700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
QVINKTKDSKLNIKKMKITVYFGLIFAIVRQTLSCPTECFCMDRKMTCQN
VILKEDDLANLQIPKDITELVLSSNELETISENTMTNLRHLETLEISDNA
FTKIPTFTFRGFSNLRRLVLSNNQITELTEGSFIGLDKCGHLDLKQNRIQ
QLQPGVFDKLALSIYEIHLEDNELKSLQNGVFPQLKFLKDLFLTRNEIKK
IDSQVFAQMRMEHLGLGSNQIQVIPSSAFEGFRIKTRINLLNNPLDCSCK
HAMGYKINFQHLRHKLWGHCKTPYHFEPYSTEIMNAHEELDHCSMCDLNP
CRNQGKCTGNKTSFKCACQERYKGQTCEVNICQGYTQKPEVSVIPDRIPL
KQINHTEVVIVQERINDEDDAKKLKILYAMCSFEFIVIICFVVYFMWKRY
EEWKLRKKYEHEKSRAILFSIRNQTNAQLAKALVEENEEFPADLKQMILK
GSVPV
Run BLAST on NCBI

transcript from alignment at scaffold_202:510401..512895

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051700 ID=TCONS_00051700|Name=TCONS_00051700|organism=Clytia hemisphaerica|type=transcript|length=2495bp|location=Sequence derived from alignment at scaffold_202:510401..512895 (Clytia hemisphaerica)
caggtaattaacaaaacaaaagacAGCAAATTAAATATAAAGAAGATGAA
GATAACCGTATACTTTGGATTGATATTTGCAATCGTCCGACAGACATTGT
CCTGTCCGACAGAATGTTTTTGTATGGATCGCAAAATGACTTGTCAAAAT
GTAATTCTCAAGGAAGACGATCTGGCGAATCTTCAAATTCCAAAGGATAT
CACAGAGCTAGTGTTATCATCCAATGAGTTAGAAACAATCTCAGAGAACA
CAATGACAAACTTAAGGCATTTAGAGACTCTGGAGATTTCAGATAACGCT
TTTACAAAAATACCTACATTTACTTTCCGTGGATTTTCGAATTTACGGCG
ATTAGTTTTGAGTAATAATCAAATCACAGAGCTAACAGAAGGATCCTTTA
TTGGTTTGGATAAATGTGGACATCTAGATCTAAAACAGAATCGAATCCAA
CAATTGCAACCAGGAGTTTTCGATAAGCTGGCTTTATCGATTTACGAGAT
TCACTTAGAAGACAACGAATTGAAATCGCTACAAAACGGAGTTTTCCCAC
AATTGAAGTTTCtgaaagatttatttttgaccagGAATGAAATAAAGAAG
ATTGACAGTCAAGTTTTTGCACAAATGCGAATGGAACATTTAGGACTTGG
TTCTAATCAAATCCAGGTCATTCCATCATCAGCTTTTGAAGGTTTTAGAA
TCAAAACAAGAATTAATCTACTCAATAACCCATTAGATTGCTCTTGTAAG
CATGCTATGGgttataaaatcaattttcaacatttgagaCATAAATTATG
GGGACATTGTAAAACGCCATATCATTTTGAACCATACAGTACTGAGATTA
TGAATGCTCACGAAGAACTTGACCATTGCTCAATGTGTGATTTAAATCCT
TGTCGAAACCAGGGCAAATGTACTGGTAATAAGACATCCTTCAAGTGCGC
ATGTCAGGAACGGTACAAAGGACAGACCTGTGAAGTAAACATTTGCCAGG
GATACACACAGAAGCCAGAGGTGTCAGTAATCCCAGATCGAATTCCATTA
AAACAGATCAACCATACTGAAGTCGTGATCGTTCAAGAGCGGATAAATGA
CGAAGATGAcgctaaaaaactgaaaatcctATACGCAATGTGTTCGTTTG
AATTTATCGTCATTATTTGTTTCGTTGTTTACTTCATGTGGAAAAGATAC
GAAGAATGGAAATTGAGGAAGAAATACGAACATGAAAAATCGAGAGCTAT
TTTATTTAGCATTCGAAATCAAACCAACGCTCAATTAGCGAAAGCCCTTG
TAgaggaaaatgaagaatttcCTGCGGACTTGAAACAGATGATACTTAAA
GGTTCAGTACCAGTGTAAATAGGGTTTTAGGTTTGCAATATGAGCACCAA
AAGGAGGAACGAGGTGATGCTAAGGCTCTGTGTGCACTTGCTAAATATCT
AATAACAGACTTGAAACAGATGGTACGTTGTCATAATGTAGGAAGAGCTA
TGACAACAATTTCATAACATGAGTATAGTATGGCTCTTTGCACACTTAGA
GACACAAACGCTTAATgaaaaaatggaatttttatcCCAAAAATAAATGG
ATTTGTAATGGAAAATGCAAGTTGAAAGCGAAAATTGAAGCTAAAAACCG
ACTTACGTTGAAACTGTAAAGAGTCTATGAAAGTGTATGGTAATTCTTCA
GACTGCATTTCGGAAAGTTTTTATTCCACCCAACGccttgtgtgtgtgtg
tgtgttgaAATAACTCGAACGGATCATTTGGATTTAGAACATTTGAACAT
TTCTATGCATGCATCCTAAAAGTTCCAAATAAAAGACTCTATTTCTTAGA
AGATTTCCATTATTCTTCTTCAAGAATCTGATTTGCATAAGCATCACATT
AGAGTTAAGTAATTTTCACAGCGAAGAGAGATGAAAAGATGATTATAAGA
CAGCTTATAAAACATGGTAGGGTTGGCTTTTATGATGGGAAATGGGTTAT
ATTCCagaatgggctattccaaattTGTACCGCCCCTATGTTGAGAGAGC
GTTTTTTTTGAGAATGTGAAcctggattttttttccaatttttttagaCA
CCCTGGATTGTTTTTCTCACGTtttgaccaccctggattttcaacctcat
tttactgacaaCTCTGGATTTTTTCAGTCGAAAAACCAGACCCCCtgaat
tcttaattttccagACCATCCTAAACGTCACAGCTCCTCAGCATAGGGGG
TAcaaactatttctggaaaaaacCCAGAAAACTTGAATACTAGGCCCCTT
CCCGGGAATTATACTTCctgaaatattttgtaaataatgataaaagtttt
tcttctcaaaattattttatggaattttggaaaggagaaaataaatatgg
aggtgttttttttttgcccaaataaagttttttatatTGTATATTTTGGT
ATTACGATATTATGTAAGATAATTATGtattaaatgaaaacaaat

Coding sequence (CDS) from alignment at scaffold_202:510401..512895

>TCONS_00051700 ID=TCONS_00051700|Name=TCONS_00051700|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_202:510401..512895 (Clytia hemisphaerica)
caggtaattaacaaaacaaaagacAGCAAATTAAATATAAAGAAGATGAA
GATAACCGTATACTTTGGATTGATATTTGCAATCGTCCGACAGACATTGT
CCTGTCCGACAGAATGTTTTTGTATGGATCGCAAAATGACTTGTCAAAAT
GTAATTCTCAAGGAAGACGATCTGGCGAATCTTCAAATTCCAAAGGATAT
CACAGAGCTAGTGTTATCATCCAATGAGTTAGAAACAATCTCAGAGAACA
CAATGACAAACTTAAGGCATTTAGAGACTCTGGAGATTTCAGATAACGCT
TTTACAAAAATACCTACATTTACTTTCCGTGGATTTTCGAATTTACGGCG
ATTAGTTTTGAGTAATAATCAAATCACAGAGCTAACAGAAGGATCCTTTA
TTGGTTTGGATAAATGTGGACATCTAGATCTAAAACAGAATCGAATCCAA
CAATTGCAACCAGGAGTTTTCGATAAGCTGGCTTTATCGATTTACGAGAT
TCACTTAGAAGACAACGAATTGAAATCGCTACAAAACGGAGTTTTCCCAC
AATTGAAGTTTCtgaaagatttatttttgaccagGAATGAAATAAAGAAG
ATTGACAGTCAAGTTTTTGCACAAATGCGAATGGAACATTTAGGACTTGG
TTCTAATCAAATCCAGGTCATTCCATCATCAGCTTTTGAAGGTTTTAGAA
TCAAAACAAGAATTAATCTACTCAATAACCCATTAGATTGCTCTTGTAAG
CATGCTATGGgttataaaatcaattttcaacatttgagaCATAAATTATG
GGGACATTGTAAAACGCCATATCATTTTGAACCATACAGTACTGAGATTA
TGAATGCTCACGAAGAACTTGACCATTGCTCAATGTGTGATTTAAATCCT
TGTCGAAACCAGGGCAAATGTACTGGTAATAAGACATCCTTCAAGTGCGC
ATGTCAGGAACGGTACAAAGGACAGACCTGTGAAGTAAACATTTGCCAGG
GATACACACAGAAGCCAGAGGTGTCAGTAATCCCAGATCGAATTCCATTA
AAACAGATCAACCATACTGAAGTCGTGATCGTTCAAGAGCGGATAAATGA
CGAAGATGAcgctaaaaaactgaaaatcctATACGCAATGTGTTCGTTTG
AATTTATCGTCATTATTTGTTTCGTTGTTTACTTCATGTGGAAAAGATAC
GAAGAATGGAAATTGAGGAAGAAATACGAACATGAAAAATCGAGAGCTAT
TTTATTTAGCATTCGAAATCAAACCAACGCTCAATTAGCGAAAGCCCTTG
TAgaggaaaatgaagaatttcCTGCGGACTTGAAACAGATGATACTTAAA
GGTTCAGTACCAGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032731XLOC_032731Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051700-exon-scaffold_202-1491911889:510401..512895TCONS_00051700-exon-scaffold_202-1491911889:510401..512895Clytia hemisphaericaexon
TCONS_00051700-exon-scaffold_202-1510915933:510401..512895TCONS_00051700-exon-scaffold_202-1510915933:510401..512895Clytia hemisphaericaexon
TCONS_00051700-exon-scaffold_202-1575043694:510401..512895TCONS_00051700-exon-scaffold_202-1575043694:510401..512895Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051700-proteinTCONS_00051700-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:510401..512895 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0465587	0	0.0702882	0.068766	0.502296	0.562305	6.96355	7.49053	3.19104	2.65668	2.18555	2.67701	7.03932	6.32425	7.62283	6.40252	18.0699	16.2283	7.86938	8.52822	15.5004	15.326	6.19246	9.70664	11.114	13.7557	13.3641	11.6053	0.223932	0.298351
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR000742EGF-like_dom
IPR001881EGF-like_Ca-bd_dom
IPR001611Leu-rich_rpt
IPR032675L_dom-like
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00051700 vs. Swiss-Prot (Human)
Match: CHADL (Chondroadherin-like protein OS=Homo sapiens GN=CHADL PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.639e-19
Identity = 58/214 (27.10%), Postives = 97/214 (45.33%), Query Frame = -1 
Query: 1761 CPTECFCM--DRKMTCQNVILKEDDLANLQIPKDITELVLSSNELETISENTMTNLRHLETLEISDNAFTKIPTFTFRGFSNLRRLVLSNNQITELTEGSFIGLDKCGHLDLKQNRIQQLQPGVFDKLALSIYEIHLEDNELKSLQNGVFPQLKFLKDLFLTRNEIKKIDSQVFAQMR-MEHLGLGSNQIQVIPSSAFEGFRIKTRINLLNNPL 2393
            CP  C C+   R  +C+   L+         P D   L L  N   ++       L HL +L +      ++      G   L  L LS+NQ+  L+  +  G  + G+L L++NR  Q+ PG   +   S++ +HL+DN +  L  G   + + L+ ++L+ N I ++        R +E L L  NQ++ +P+ A EG      + L  NPL
Sbjct:  396 CPRACVCVPESRHSSCEGCGLQAVPRG---FPSDTQLLDLRRNHFPSVPRAAFPGLGHLVSLHLQHCGIAELEAGALAGLGRLIYLYLSDNQLAGLSAAALEGAPRLGYLYLERNRFLQV-PGAALRALPSLFSLHLQDNAVDRLAPGDLGRTRALRWVYLSGNRITEVSLGALGPARELEKLHLDRNQLREVPTGALEGLPALLELQLSGNPL 605
The following BLAST results are available for this feature:
BLAST of TCONS_00051700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHADL1.639e-1927.10Chondroadherin-like protein OS=Homo sapiens GN=CHA... [more]
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