TCONS_00051748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051748
Unique NameTCONS_00051748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051748 ID=TCONS_00051748|Name=TCONS_00051748|organism=Clytia hemisphaerica|type=transcript|length=786bp
TTGACGACTACGTACCAGTAAAGATTAACGTGTGTGTACCAGATGAAGAA
CTTCGAAAGCTCGCTGGTATTCgtgataaaaaatcaaccaacaaGACAAC
GCCGCCCGTGTCCAACCGAATCGATACAACAGCTTATATAGACGATGGTC
AACAACCGGGCTTTTCAAAGTGGTCAGATGAGCACAATCCACCCCAGTGT
GATTCAACTGATTCTGAAGAAAGGACAGCTGAGAGACTACGACGACTAAA
GGAGAGAAGACGGGTACGAAAGCGTCACATTGAAACAACTGATGAAGACA
CAGAAGAAGACGAAGAAGATTTGTTATGCGGGGTCAATGAAACAATGAAT
GCCTTGCTGGCTCATCTTGACTACGCTGAAGATGGTGAACAAGTAGATTT
CGTGGCTACTTTCCTCACGACGAGCCGCGCTCATTTCCTACGAAAAGCGG
AAAAGAACGATCGCATTTTCAAATTCACCGAAATCAATACCGTCGAGTAC
TGGGCGGAAATGACTCGAACAATCGTGAAATGGTTCGATAGAGGTCCAAA
ACGCTTGACTTTTGCACACTATAACACCTTCCATGACAACATGGCTCGCC
ACGGTGGTGTCAAAAGGCGGGGGGCAAAGCCTGCTATTGATTGTTGGTTT
CTGGTTGCAGGACTAGTTCGCGATGGATTTGATGCAAAATCGTACCTAGC
TATGTTCCCTTGGATAGAGAACGACCTAAGGGCAATTCGCAAACACTTAG
ATattaaaactgaaagaaaacttatttgaaaaaaag
Run BLAST on NCBI

transcript from alignment at scaffold_204:39113..41772+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051748 ID=TCONS_00051748|Name=TCONS_00051748|organism=Clytia hemisphaerica|type=transcript|length=2660bp|location=Sequence derived from alignment at scaffold_204:39113..41772+ (Clytia hemisphaerica)
TTGACGACTACGTACCAGTAAAGGTAAAGTTTTATGTTGTATTTTACGTG
AAATTATTTGGTTTAGAGTGATGTATTTCATTTTTGAGCACTTAATTTAC
AGAAACAATTAACTTGTGGTAACTTAAACACTGTCNAATGAGGTTTATTA
TCAAGTTTTACCAATGTCTCCTGGCGTTCCAGCTGccaccaaaaacaaaa
aagctcACGTTGGTTGGGcacaaaaattttggaaaaacgaCATTTGTTAA
CGTGGTTCGTGGCCTAACACACCCTGAATTTATCGCCACACTTATCGATT
CACGATCAgactcaatttctttttatcGACGAAATGAGTCCTGAAATCTT
GACAGCTAGTCAGGCCAAGATCCTTTTGCAAGGCGGTCAAGTGACAGTTT
CCTGGAAGAATCAGGACCCATAGATTGTTGATAATCGGGCTGGTGAGTAC
AGTGATTTTGTTTAGCTTGTTTTCTTATTTGCTTTTTTTCCAATGGTTGC
TTTGAATATAGCCTTTTTCGCGTTGTGGAATAGACACCCTAAGTGACTAC
GATCATTCTTTTACGTCAGGTATTTTCATCACATGTAACAACCGTCCGAA
ATACGGCGACGATCAAAAAGACGTGGAAGATAGGATGGAGTACATGCAGA
CAAAGGAAATTCCTGAGGACGAGCGTGACTCGTTTGCAGCCACATGGATC
CGTGAGCATGCGTTTGAATGCCTCCTCTGGATGTGCAATATGATGCGCga
aaatgatgaatttattgatGAGAAGGAACTGTTCTTTGTGAAAACAGTTG
ACGACTACGTACCAGTAAAGGTAAAGTTTTATGTTGTATTTTACGTGAAG
TTATTTAGTTTAGAGTGATGTATTTCATTTTTGAGCACTTAATTTACAGA
AACAATTAACTTGTGGTAACTTAAACACTgtcatttttgaatttaaaacc
acTACCGTTTCTTCTAGATTAACGTGTGTGTACCAGATGAAGAACTTCGA
AAGCTCGCTGGTATTCgtgataaaaaatcaaccaacaaGACAACGCCGCC
CGTGTCCAACCGAATCGATACAACAGCTTATATAGACGATGGTCAACAAC
CGGGCTTTTCAAAGTGGTCAGATGAGCACAATCCACCCCAGTGTGATTCA
ACTGATTCTGAAGAAAGGACAGGTAAATTCTTTCACTTACTTGCTAAGTG
ACACTTGAAATTTAATGTGCATTTACAAATGCATCAAAACACCTAATAAC
AAGTTGACAAAACTGTCATTTGTAAGACTTTTTTATCCTTTTCGTTTTTA
GCTGAGAGACTACGACGACTAAAGGAGAGAAGACGGGTACGAAAGCGTCA
CATTGAAACAACTGATGAAGACACAGAAGAAGGTAACTCTTTAGACATTG
AGACTCTTGGTAATCATTCATCTCTCCAGTAGATATTTTTACTTAAATAC
GTTCAACACTTTGCTTTTTTAGAACAACCTCGAAAAAGAAATTCCTACGA
ACCCGAGAACGAACATGAATGTCATAGATTTGAAGGTATAATCTTTTGCC
CTGATATTGCAAGAATATATAGGCTAGAGGCTAGTGGATCAATTAGATGT
GGATATTTTTCTGGCCATTCAAACCATTATACACTTTACACAACCTGTAA
GAGACGTGTTTTTTCGAAAGGATTACTTTCAAGGATGTTTGGGAAAACTT
CAGATCTCAAGTCTAGTTGCTGAACTAAAATTTAATTTCCTTGTATTTCA
GACGAAGAAGATTTGTTATGCGGGGTCAATGAAACAATGAATGCCTTGCT
GGCTCATCTTGACTACGCTGGTGAGTAAAGACTTTCTTCTAGCTCTctag
aaaagaaagaaacatcATCTAAAATTTCTTAGGTTTATTCATTTGAAGCT
TTTAGCCGTTATATAGATATAGATCAGAACTTTGAAACGATTTAActcat
ttcattttaaattttgaaattccatAAATGGTTTTGGGAAATTTTCCTGT
TCAATGTTTTATAAATTNAAATTTTGAAATTCCATAAATGGTTTTGGGAA
ATTGTCCTGTTCAATGTTTTATAAATTAACTTGTCAGTGATTGAACATAA
CAAGGCTTCTTTTCAACTTTCTAGAAGATGGTGAACAAGTAGATTTCGTG
GCTACTTTCCCCACGACGAGCCGCGCTCATTTCCTACGAAAAGCGGAAAA
GAACaatcgaattttcaaatttaccgAGATCAATACCGTCCAGTACTGNT
AGAAGATGGTGAACAAGTAGATTTCGTGGCTACTTTCCTCACGACGAGCC
GCGCTCATTTCCTACGAAAAGCGGAAAAGAACGATCGCATTTTCAAATTC
ACCGAAATCAATACCGTCGAGTACTGGGCGGAAATGACTCGAACAATCGT
GAAATGGTTCGATAGAGGTCCAAAACGCTTGACTTTTGCACACTATAACA
CCTTCCATGACAACATGGCTCGCCACGGTGGTGTCAAAAGGCGGGGGGCA
AAGCCTGCTATTGATTGTTGGTTTCTGGTTGCAGGACTAGTTCGCGATGG
ATTTGATGCAAAATCGTACCTAGCTATGTTCCCTTGGATAGAGAACGACC
TAAGGGCAATTCGCAAACACTTAGATattaaaactgaaagaaaacttatt
tgaaaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032761XLOC_032761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051748-exon-scaffold_204-1491911889:39113..39135TCONS_00051748-exon-scaffold_204-1491911889:39113..39135Clytia hemisphaericaexon
TCONS_00051748-exon-scaffold_204-1510915933:39113..39135TCONS_00051748-exon-scaffold_204-1510915933:39113..39135Clytia hemisphaericaexon
TCONS_00051748-exon-scaffold_204-1575043694:39113..39135TCONS_00051748-exon-scaffold_204-1575043694:39113..39135Clytia hemisphaericaexon
TCONS_00051748-exon-scaffold_204-1491911889:40080..40284TCONS_00051748-exon-scaffold_204-1491911889:40080..40284Clytia hemisphaericaexon
TCONS_00051748-exon-scaffold_204-1510915933:40080..40284TCONS_00051748-exon-scaffold_204-1510915933:40080..40284Clytia hemisphaericaexon
TCONS_00051748-exon-scaffold_204-1575043694:40080..40284TCONS_00051748-exon-scaffold_204-1575043694:40080..40284Clytia hemisphaericaexon
TCONS_00051748-exon-scaffold_204-1491911889:40414..40494TCONS_00051748-exon-scaffold_204-1491911889:40414..40494Clytia hemisphaericaexon
TCONS_00051748-exon-scaffold_204-1510915933:40414..40494TCONS_00051748-exon-scaffold_204-1510915933:40414..40494Clytia hemisphaericaexon
TCONS_00051748-exon-scaffold_204-1575043694:40414..40494TCONS_00051748-exon-scaffold_204-1575043694:40414..40494Clytia hemisphaericaexon
TCONS_00051748-exon-scaffold_204-1491911889:40864..40932TCONS_00051748-exon-scaffold_204-1491911889:40864..40932Clytia hemisphaericaexon
TCONS_00051748-exon-scaffold_204-1510915933:40864..40932TCONS_00051748-exon-scaffold_204-1510915933:40864..40932Clytia hemisphaericaexon
TCONS_00051748-exon-scaffold_204-1575043694:40864..40932TCONS_00051748-exon-scaffold_204-1575043694:40864..40932Clytia hemisphaericaexon
TCONS_00051748-exon-scaffold_204-1491911889:41365..41772TCONS_00051748-exon-scaffold_204-1491911889:41365..41772Clytia hemisphaericaexon
TCONS_00051748-exon-scaffold_204-1510915933:41365..41772TCONS_00051748-exon-scaffold_204-1510915933:41365..41772Clytia hemisphaericaexon
TCONS_00051748-exon-scaffold_204-1575043694:41365..41772TCONS_00051748-exon-scaffold_204-1575043694:41365..41772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:39113..41772 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.961657	1.09305	0.473028	0.00013001	3.8434	3.32027	4.85073	4.87225	4.1829	4.47208	6.01812	5.05416	1.16418	3.74783	4.61988	4.67592	4.67139	4.68615	5.97113	9.48982	2.93564	0.133064	1.46063	2.93004	4.38968	5.15539	2.54142	1.62602	2.31076	0.548092
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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