TCONS_00051761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051761
Unique NameTCONS_00051761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051761 ID=TCONS_00051761|Name=TCONS_00051761|organism=Clytia hemisphaerica|type=transcript|length=656bp
GAAAAGGATGCTTATCTACACGCTGATAACTGTTCTGgacaaaacaaaaa
caatgctTTTGTATGGTACCTCATGTGGAGGATTATCAATGGATATCACG
AATCTATTGAATACTCGTTTATGGTTGCCGGACATACCAAGTCTAGTTGC
GACAGatgcTTCGGCAGCTTCAAAAAGCAACTGCGAAAAACACGTGTTTC
ATCGCTATACGAAATCGCTGACGTGTGCAGCAAGTCAAAGTGCAATTTTC
CCGTTCTTGTTGGCAACCACAACAAGGAAATCAATGTTGTCACATACGAT
TGGACAACATATTTTGAGAAAGACTTGAACTTTCAAGCTATCAAGGACAT
TTTACAATGTCACCATTTTCGTATGACTAAGGAGGAACCTGGTATTGTAA
CCTGCTTGAAATCGCTTGATGATGAACCAGTTAAAGTATCAATTTTCCGT
AAACGTAATCCTCCGAAAGTGACATCTGAGCTACCAACAATTGTAACACC
CAAAGGTTTCACAAAACAAAGAGCAAGTTATCTCCGTAAGGAAATTCGTC
AATTTTGCACGCCTGGAACAGAGGATTTGGTAGCACCGCAATCGTATTGG
TCATTGTGACGAATTTTATGTTCCTTTAATTTTCAAGCATCTTTTACTAC
ATTTAT
Run BLAST on NCBI

protein sequence of TCONS_00051761-protein

>TCONS_00051761-protein ID=TCONS_00051761-protein|Name=TCONS_00051761-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
EKDAYLHADNCSGQNKNNAFVWYLMWRIINGYHESIEYSFMVAGHTKSSC
DRCFGSFKKQLRKTRVSSLYEIADVCSKSKCNFPVLVGNHNKEINVVTYD
WTTYFEKDLNFQAIKDILQCHHFRMTKEEPGIVTCLKSLDDEPVKVSIFR
KRNPPKVTSELPTIVTPKGFTKQRASYLRKEIRQFCTPGTEDLVAPQSYW
SL
Run BLAST on NCBI

transcript from alignment at scaffold_204:128945..132702-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051761 ID=TCONS_00051761|Name=TCONS_00051761|organism=Clytia hemisphaerica|type=transcript|length=3758bp|location=Sequence derived from alignment at scaffold_204:128945..132702- (Clytia hemisphaerica)
GAAAAGGATGCTTATCTACACGCTGATAACTGTTCTGGTATGATTAATTT
GTTTTCGAATTTTACTCTTCTGTGCCTAGTTGGAGGGAGGGGGTATTCTC
AGAAAGAAATTAGTATAAAGTCGGTATAAAGTATTCTCTGTAATTCGAGT
CTTCCTCTAACTCGAAGAAAATTCTCAGCCCTGGAAGATCGAGAGAGTCA
ACTAATAAAACTTTTTTCGGCACTATGAGCATCAAGTTTTTCTGCTTCTT
ATTTTATGTTAGTTAAATTTTGAGTCAATGTAAGGTTTGTTCTTTTAAGA
CTTTTACAATGACAAGATCAATTCTGATTTCAATTTTTTTTTCCTTTTTT
CAGGACAAAACAAAAACAATGCTTTTGTATGGTACCTCATGTGGAGGATT
ATCAATGGATATCACGAATCTATTGAATACTCGTTTATGGTTGCCGGACA
TACCAAGTCTAGTTGCGACAGGTACAGTAGTTTATTTAAAGGTTTTTTTT
TACATAAGTGTTCTTGTCCTCTTTCTGACCAATCTTGCTCCACATTTGTG
TCAATCCAATGTGAATTAAGATTGATGAGTAAGCAAACGATATCACTCTT
GTTTAAAAACAAAACCTTTAAAGTACTAAAAACTAACAGAGGATTCGATC
AAAATCACTTTAAAAATTGTCATTATCGAATCATCCTAATAATGCTAAAG
TTTCCTTAGGTTAACAATAAAAATTATACACATAATTTTTTCTGCAAATC
TTAGCTTAACAGATTCATACAAGTGGGCTTCCATAAATAATATTAAAAAA
CATTTCAAATATTGTTACAACAANAATTCATCCATAAATAATCCTTTGGC
AAGATCTGCGTACGCGGGACGTAAATTTGTATATGTTCGAGAAATGCTAC
CGATTTGGTTCACAAAAAAGCCCCGAGCAAAGTAGACTTTTCTTTATTTC
ATAAAATAAAAGTGTTTTTAAAATTATATCGAGTTTGACCATCCAATCAA
GTGCGAGATGTTTGTTTTTATGTCGTTGCTGCTACTTTCACTTTTGCAGA
AGATGGCGATTTTTGTCAAGGCAGGATCCTGCTGATTTTTTAAGCTGGAA
GGCATCTTTTGCTTGTAAAATAACGTTACTGCTGTTCACACTTATTGGAA
ATTTTACTCGAGTATCATTCTTGAGGTTTTTTACCACTTCCTCTGGGAGA
GGAGAGCTGTCCTACCATCCACTTGCTAATGTGACAATGTGTGCAACTTG
AAATTTTTTCGATAAATGCAATGGTTTGACAGATGGTTGTTTACCTTGTG
GCATCCATACTGCATGGCACATTTTTGTGACAATTGATTGGAGTAACCAT
TCCTACTACATCAATTGATCTCATCGAAAACTATTTTTATGGCTTGAGAT
CAAACCAAATATCTGAAACTGTCAAGTCAGATTTAAAGCAACATTTGGAT
TTCGAAATATTTTAACATTTAGACTTTATTATTTTATTGGAATATCATGT
CATGGTTAAACTTTACATTCAGTCGAACAATGATTTTTTTGTCATGTTGT
CTATAAACGGTTCAGCGTATTCGAGTAAACGCTTTTACGACAAAGATCAT
ACATACGCCATCAAATATTTGGTGATTGTGGTCAGTAACATTTGTTGAGG
AGGTATGCTGGGAAGAACAGACACATTATTTATTAATGGACATTATCAGA
GTTTTTGACTTTTCTAAAAAAGCGATGCATTGTGGGATTGTTTCGAGTGT
ATTACAAATAATATTTCTTAGGAACTCCTCGAGGGAATTCTATTGTAATA
AATACAAATCGCTTTTTTAGAAAAATAAAAAACTTCAATAAGGTCTATTA
TTCAACACGACATAAGAAAAACTTTGTTGTAGTTTGAGATCAAGCAAACG
CAAACATTACCAGATTCCCATCAAGATTCAATATTAATATTATGTAGCTA
CGTATAATATAATGCAACACAAGAAGGGGGACAAATTGTGAATTTTTTGG
TGGTACATGCGACGTTTTGTGTGTGACATGTGATGCTTAATGACATTAAA
TTGTACATGTTAACAGTAAGGCAGCAATCAGAAAATACACTTCCATTTTA
TTTTTAATCTTTTTAAAGTCAGTAGTAGAAAATTTCAAATTCACTGCTGC
TGGTGGTCATTATTCAGTTCAAACACTTTAAATAATTTCCAAATAATATA
AGCTCTTTCACAGCATTTTCCTCAAAATTCTTGAACATGTTACTGGCAAA
ATGAAATGCATCCGGAGAGGTTCGTGATCGCTGCCTTATAATATTGGAAT
GTTTCAAGGGGTTCGAAGTCATTGCATGATTTGCTTTTTTGATTGCATGA
ATGTATGAAAACTAGTAGTAAATTTATAAATTAGTGATATTTTTGTAAAA
ATTGATTTTATTCTTTACCACTTTTAGTTATGACATCCTAAACTATCAAA
AAGTCCATATTACAATGTCACATTTACTGTAATATTTTAAAACTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNACTACAGAATCAAAACAATGACGAGAAAGACTACA
TTATTACTAAAACTACACATCAATGTGTTATTGTTTTAATGACTTCATGA
TTGAAATAGGGTCTTTTTTTCAAAGGATAAGTTTGTTGAAAAATTCTAGA
AGGATCTTTTACAACTCATCAAATTATTTTCAGTTTAAAAGCTCTGTATG
AAATACTCTGTGTTACCCTTTTAGTAATCCCCCTATGTTACTAAGTCCAT
GTCCATGCTACGATGTTACTCTTTACAGTTTTATTTTTTTATTTTTGTTA
TTTTACCTTGTGAAAAGTTGTATTGGGCAGATATCTTTATACTTTTTCCA
GGAAGATTTTTTGAAACTACTACAAAAGTATTACAAAATCTAGTACAAAT
GACTTTTTTATCTGTCTTTTTATTTTTTCAACATCCTCTTCTTTGAAATT
ATTGTTATGACTCACTGGCAATAAATTCTTGGTGAAATGTAAAGGTCTTA
TTAGTTTGTTTTTTAAATTCTGTATTAATAATGGAGTCGTCGATTTCTTT
GCTTTGCGAAAACAGAACGCTCGTTCCGCAAGCCCTTTTATGTTGATAAA
AAACATTTCCAGTTTTTTGTTACAACAATATTTAATAACTGTCAAATTTT
ATTTTAGATGCTTCGGCAGCTTCAAAAAGCAACTGCGAAAAACACGTGTT
TCATCGCTATACGAAATCGCTGACGTGTGCAGCAAGTCAAAGTGCAATTT
TCCCGTTCTTGTTGGCAACCACAACAAGGAAATCAATGTTGTCACATACG
ATTGGACAACATATTTTGAGAAAGACTTGAACTTTCAAGCTATCAAGGAC
ATTTTACAATGTCACCATTTTCGTATGACTAAGGAGGAACCTGGTATTGT
AACCTGCTTGAAATCGCTTGATGATGAACCAGTTAAAGTATCAATTTTCC
GTAAACGTAATCCTCCGAAAGTGACATCTGAGCTACCAACAATTGTAACA
CCCAAAGGTTTCACAAAACAAAGAGCAAGTTATCTCCGTAAGGAAATTCG
TCAATTTTGCACGCCTGGAACAGAGGATTTGGTAGCACCGCAATCGTATT
GGTCATTGTGACGAATTTTATGTTCCTTTAATTTTCAAGCATCTTTTACT
ACATTTAT

Coding sequence (CDS) from alignment at scaffold_204:128945..132702-

>TCONS_00051761 ID=TCONS_00051761|Name=TCONS_00051761|organism=Clytia hemisphaerica|type=CDS|length=1827bp|location=Sequence derived from alignment at scaffold_204:128945..132702- (Clytia hemisphaerica)
ATGCTTCGGCAGCTTCAAAAAGCAACTGCGAAAAACACGTGTTTCATCGC
TATACGAAATCGCTGACGTGTGCAGCAAGTCAAAGTGCAATTTTCCCGTT
CTTGTTGGCAACCACAACAAGGAAATCAATGTTGTCACATACGATTGGAC
AACATATTTTGAGAAAGACTTGAACTTTCAAGCTATCAAGGACATTTTAC
AATGTCACCATTTTCGTATGACTAAGGAGGAACCTGGTATTGTAACCTGC
TTGAAATCGCTTGATGATGAACCAGTTAAAGTATCAATTTTCCGTAAACG
TAATCCTCCGAAAGTGACATCTGAGCTACCAACAATTGTAACACCCAAAG
GTTTCACAAAACAAAGAGCAAGTTATCTCCGTAAGGAAATTCGTCAATTT
TGCACGCCTGGAACAGAGGATTTGGTAGCACCGCAATCGTATTGGTCATT
GTGAGACAAAACAAAAACAATGCTTTTGTATGGTACCTCATGTGGAGGAT
TATCAATGGATATCACGAATCTATTGAATACTCGTTTATGGTTGCCGGAC
ATACCAAGTCTAGTTGCGACAGGAAAAGGATGCTTATCTACACGCTGATA
ACTGTTCTGATGCTTCGGCAGCTTCAAAAAGCAACTGCGAAAAACACGTG
TTTCATCGCTATACGAAATCGCTGACGTGTGCAGCAAGTCAAAGTGCAAT
TTTCCCGTTCTTGTTGGCAACCACAACAAGGAAATCAATGTTGTCACATA
CGATTGGACAACATATTTTGAGAAAGACTTGAACTTTCAAGCTATCAAGG
ACATTTTACAATGTCACCATTTTCGTATGACTAAGGAGGAACCTGGTATT
GTAACCTGCTTGAAATCGCTTGATGATGAACCAGTTAAAGTATCAATTTT
CCGTAAACGTAATCCTCCGAAAGTGACATCTGAGCTACCAACAATTGTAA
CACCCAAAGGTTTCACAAAACAAAGAGCAAGTTATCTCCGTAAGGAAATT
CGTCAATTTTGCACGCCTGGAACAGAGGATTTGGTAGCACCGCAATCGTA
TTGGTCATTGTGAGACAAAACAAAAACAATGCTTTTGTATGGTACCTCAT
GTGGAGGATTATCAATGGATATCACGAATCTATTGAATACTCGTTTATGG
TTGCCGGACATACCAAGTCTAGTTGCGACAGGAAAAGGATGCTTATCTAC
ACGCTGATAACTGTTCTGATGCTTCGGCAGCTTCAAAAAGCAACTGCGAA
AAACACGTGTTTCATCGCTATACGAAATCGCTGACGTGTGCAGCAAGTCA
AAGTGCAATTTTCCCGTTCTTGTTGGCAACCACAACAAGGAAATCAATGT
TGTCACATACGATTGGACAACATATTTTGAGAAAGACTTGAACTTTCAAG
CTATCAAGGACATTTTACAATGTCACCATTTTCGTATGACTAAGGAGGAA
CCTGGTATTGTAACCTGCTTGAAATCGCTTGATGATGAACCAGTTAAAGT
ATCAATTTTCCGTAAACGTAATCCTCCGAAAGTGACATCTGAGCTACCAA
CAATTGTAACACCCAAAGGTTTCACAAAACAAAGAGCAAGTTATCTCCGT
AAGGAAATTCGTCAATTTTGCACGCCTGGAACAGAGGATTTGGTAGCACC
GCAATCGTATTGGTCATTGTGAGACAAAACAAAAACAATGCTTTTGTATG
GTACCTCATGTGGAGGATTATCAATGGATATCACGAATCTATTGAATACT
CGTTTATGGTTGCCGGACATACCAAGTCTAGTTGCGACAGGAAAAGGATG
CTTATCTACACGCTGATAACTGTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032769XLOC_032769Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051761-proteinTCONS_00051761-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051761-exon-scaffold_204-1575043694:132666..132702TCONS_00051761-exon-scaffold_204-1575043694:132666..132702Clytia hemisphaericaexon
TCONS_00051761-exon-scaffold_204-1575043694:132232..132349TCONS_00051761-exon-scaffold_204-1575043694:132232..132349Clytia hemisphaericaexon
TCONS_00051761-exon-scaffold_204-1575043694:128945..129445TCONS_00051761-exon-scaffold_204-1575043694:128945..129445Clytia hemisphaericaexon
TCONS_00051761-exon-scaffold_204-1510915933:132666..132702TCONS_00051761-exon-scaffold_204-1510915933:132666..132702Clytia hemisphaericaexon
TCONS_00051761-exon-scaffold_204-1510915933:132232..132349TCONS_00051761-exon-scaffold_204-1510915933:132232..132349Clytia hemisphaericaexon
TCONS_00051761-exon-scaffold_204-1510915933:128945..129445TCONS_00051761-exon-scaffold_204-1510915933:128945..129445Clytia hemisphaericaexon
TCONS_00051761-exon-scaffold_204-1491911889:132666..132702TCONS_00051761-exon-scaffold_204-1491911889:132666..132702Clytia hemisphaericaexon
TCONS_00051761-exon-scaffold_204-1491911889:132232..132349TCONS_00051761-exon-scaffold_204-1491911889:132232..132349Clytia hemisphaericaexon
TCONS_00051761-exon-scaffold_204-1491911889:128945..129445TCONS_00051761-exon-scaffold_204-1491911889:128945..129445Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:128945..132702 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.632662	0.597359	0.345603	0	24.4405	13.7686	8.55571	9.94561	6.38774	9.83351	8.62408	6.00151	5.90194	3.3914	5.43869	5.8531	3.99404	4.18331	3.84726	11.3208	4.41502	5.63707	4.02748	4.27358	1.71154	3.53658	14.7143	9.96415	7.10603	5.98673
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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