TCONS_00051842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051842
Unique NameTCONS_00051842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051842 ID=TCONS_00051842|Name=TCONS_00051842|organism=Clytia hemisphaerica|type=transcript|length=1352bp
GCTATTTTTATGTATTTGAACAAAGTacccaaaaattagaaaaatctgAG
GATATCACTTCCTTGACCTGCCTCATTctacagaaaatggctcttaaaat
ttttaagggTGTACCTCTTTATGTACATGCGACTCTAAAAtttaaagaca
ttgcattgtaTGTCTGAggtctttttatttttcctttaattcgttttttg
cttcattttATTTAGATTGATAGtgatacattttttaataacaAGTAAAA
ATGGCAGATAGTGAGAATTCAGCCAGTAGTGACAATCAAGAAAATCGAAG
TAACAATGCTGCTAATGAAGCAGTTGGAATACAGaactttttgaTGCAAG
ACCGGAGTGCAACTGTGTTATGGTTGATCAGATTGTACATTGTTGTCAGT
ACATTTTTGTACATTGTGCCCTTGATGGGGCCTGACGTTAGTAGGAATTC
TTATAAACGGGTGCTCCTTGGTTCCGCAGCTATTTCGGCATTGAGGCTTC
ATCAGAGATTACCTGGCATTGAATTCAGCATGGTTTTCGCAAGGAGGCTG
ATGGTGGAAGATAGTTTACATTACCTTCTTTACAGTGTCTTATTCCTGAT
GGCAGGTTCTGCTACCATGGTATTATCACCGATATTCCTCTTCGCTCTAA
TGCACGCATCTTCATACACCAAGAAAGTACTGAACGCAAGTGGTAGCAAT
GGCGCTCTAGCCCAAAAACTCCATCAATATATCAACAAATTAACGAATTC
GGAGATGCAGCGTCAAATCTTTTTATTTGTTGCAACAAATGAAATCGTCG
TCTTTGTCGTGTCTATTCTTATGGTCATAAGtGGACAAGCTTCCATGCTG
GTGCCCTTCTTTTACTATCGGTTCTTACAATTACGCTATACTTCGCAAAG
GAACCCATACTCCAGaatGGCGTTTGAACAATTTCGTGTTGCAATCATTC
AATTGTCAAACCATCCAAAATGCCCAGGATTTGCTCGAAATTTATTAATC
AGTATTATTTCATTAGCCGCTCGTTTAGCCCCAGCTGCTGCCCCTGCACA
GTGATTGGTTCTTCTTTTCAATTCTGAATGCTGATTGGACAACAATGCTC
GATTCTGTTCCCTCATTGAAGTAACCTTTCGGCCTTAAGGAATAGTATAA
ATAACTAgctttatttttcacatttcccTCGCACTTGTAGAGTGATTATC
TAAAAATTAGTTTTGTATATATTAAAGAATTTGATGTAAACCAGGAAATA
TACGATAAGAAGAATAAGCTCTTGTTCGTTTGTGATATTATTTCGTTCTC
CTTTTTCTTCCATTCATTTTATTgacttttcttttactttgtcTGAGGCT
TT
Run BLAST on NCBI

protein sequence of TCONS_00051842-protein

>TCONS_00051842-protein ID=TCONS_00051842-protein|Name=TCONS_00051842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MADSENSASSDNQENRSNNAANEAVGIQNFLMQDRSATVLWLIRLYIVVS
TFLYIVPLMGPDVSRNSYKRVLLGSAAISALRLHQRLPGIEFSMVFARRL
MVEDSLHYLLYSVLFLMAGSATMVLSPIFLFALMHASSYTKKVLNASGSN
GALAQKLHQYINKLTNSEMQRQIFLFVATNEIVVFVVSILMVISGQASML
VPFFYYRFLQLRYTSQRNPYSRMAFEQFRVAIIQLSNHPKCPGFARNLLI
SIISLAARLAPAAAPAQ
Run BLAST on NCBI

transcript from alignment at scaffold_205:48016..52165-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051842 ID=TCONS_00051842|Name=TCONS_00051842|organism=Clytia hemisphaerica|type=transcript|length=4150bp|location=Sequence derived from alignment at scaffold_205:48016..52165- (Clytia hemisphaerica)
GCTATTTTTATGTATTTGAACAAAGTACCCAAAAATTAGAAAAATCTGAG
GATATCACTTCCTTGACCTGCCTCATTCTACAGAAAATGGCTCTTAAAAT
TTTTAAGGGTGTACCTCTTTATGTACATGCGACTCTAAAATTTAAAGACA
TTGCATTGTATGTCTGAGGTCTTTTTATTTTTCCTTTAATTCGTTTTTTG
CTTCATTTTATTTAGATTGATAGTGATACATTTTTTAATAACAAGTAAAA
ATGGCAGATAGTGAGAATTCAGCCAGTAGTGACAATCAAGAAAATCGAAG
TAACAATGCTGCTAATGAAGCAGTTGGAATACAGGTTTTAAAACATTATA
TATCTTATGATGAACAGAAAAAACAACTAAAATTTTTCTTATGAAAATTT
CATATGTATTGTATTATTAACATTTAATCCGGGGGGGGGGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTCCCAAAATCAC
CAAAATTTTGTCTCTCAAAGGGTCGATTTTCGATTTTCGGCTCGGACATA
CCCGTCACCTCGCAAACCTAGTACCCCCCGGGCATTTAATGTTAATCTTA
TAAAAAAGCTGTTTCACTCTGATAATGAACATTATTGAATTTATGGACAG
AGGATTTATTATTGGGCAACTACTGGAAGCCTAGCTTAAATGTTGATGTA
TTACTTTTTAATTTTACTTGATTAGTTCTATAGTTATGCCCAAAAAACGT
CAATTTTGAAGAATTTTTAAAAAGCGAAAAATGAGGGTGACATATGCAGT
ATGAATTTTTTTTAGAACTTTTTGATGCAAGACCGGAGTGCAACTGTGTT
ATGGTTGATCAGATTGTACATTGTTGTCAGTACATTTTTGTACATTGTGC
CCTTGATGGGGTAAGTGCTAATATTTTCTAAAATTTGTATTGACTAAATA
GACAACACTCTAGACTTAATACTTCATCTATTCAGTAGAACCATAGCTAT
TTGAGGCAGGCCACTGATATTCATTTAATCGAGTAGCCTGAGCAAATTCA
TTTTAATCAAGACTTTTTCAAGGTCGTGTAAAATTACTACTTTTTCAACC
TGCCAGATTAATATATTTTATTCTTTCAGGCCTGACGTTAGTAGGAATTC
TTATAAACGGGTGCTCCTTGGTTCCGCAGCTATTTCGGCATTGAGGCTTC
ATCAGAGATTACCTGTGAGTTACATTAAAAATGATTAAAAATGAAGATGC
AGCCATAATCGTTTAGTTAATTGAGTACCTTTTGAAAAATGTGCTCATTG
TTAGTGACCCATTTAAACTTAGATCTCTTGTTTTCAGACTTACCAATTAT
ACAACCCTGTGTCACATAACCGGTAGGACTCCGTCCCACTAGAAAAATTG
TCAAAAATTTCGTCCTTGGTGGGAAAAATAACTTACAAGTTCATCCCCGC
TGGGAAATTGGCTTTGTTTTCTTTGTTTTCACCCCCATTTTAGAATTCAA
TGGAAATCCCCATTGGGATTTCGACAGAGTTTTTCATTCCCACTTTCGGA
AGTTGTTCCACCGAGGCTGTCAGACAGGTGCGTAATAACGTTTATGTTTT
ACAGGGCATTGAATTCAGCATGGTTTTCGCAAGGAGGCTGATGGTGGAAG
ATAGTTTACATTACCTTCTTTACAGTGTCTTATTCCTGATGGCAGGTTCT
GCTACCAGTATCTTTTCAAATACTTTTTTGTTCACTTTTGGTTCTGTCTT
ATTTATATTAGAATCTCAGATTTTGGAATTTTTTTTTCACACAATGTATT
CATTTTATTTGACTGTGTATTTTTCCTTGACAAAGACTTGCAGTGGTATT
ATCACCGATATTCCTCTTCGCTCTAATGCACGCATCTTCATACACCAAGA
AAGTACTGAACGTAAGTTTGCTATTCCTTTTTGAAACTCGGTTTCTTCGA
ATTACTGAAAATCTTGTTGGCAATCTAACAATGGGCTTGGTTTATGTATT
TATTAATTTCATTTTAATTTTCACTTTCCCTTTCACTTTCACTTTCACTT
TTTAGGCAAGTGGTAGCAATGGCGCTCTAGCCCAAAAGTAAATATTACCT
CTTCTTGTAATTTATTAAATTTTTATCTCAGTTCATTTCATTCAATTCAT
TGGCCATTCCTGTGAAATTATTAACTAGAGCAAACCGAATGAACTGCCCC
TAAATATGATATTTAATACATGATGCGTTTTGGGTTTTGCGGTGCTCTTA
GCGTCTTAGATACACATTGGTAATATTCAGTCTACGAAGAGCTTGACGTA
ATATTCACCTTTCCCTAACTTAATTCGATATATATTTATTAGTTAATTCA
AAATATAGGGTTGACGTTGTTGTGTGTTTCATTTTCAGACTCCATCAATA
TATCAACAAATTAACGAATTCGGAGATGCAGCGTCAAATCTTTTTATTTG
TTGCAACAAATGAAATCGTCGTCTTTGTCGTGTCTATTCTTATGGTCATA
AGGTAGGTTTAAATTCGTGAGAAAAAGTCACTATTTGCAGCCTTTTTCTG
TCCATGTTCGGATTTTACACAGAGTTTTAAAGTGCTCCCTGCCTTTTTAA
AAACTCGGGACATGCTTTAGCGGACAGTAGTCAACCAAAAAGAAGCCTGG
GGCCAAAATAACTTTAAATTGGGGCTTGACTTCATGAACTTTATTTGATC
TTTTTTTAGTATTGGATTGGTCAAAAACTGTTTAGACTTACCTAGGTCAG
CCTGTTCACATGAGCTGTCTACTATGCATAACATAGTAATTTTAATGTTG
TTTGGTCTTTTTTTTTTTCCTTTTCTAGTGGACAAGCTTCCATGCTGGTG
CCCTTCTTTTACTATCGGTTCTTACAATTACGCTATACTTCGCAAAGGAA
CCCATACTCCAGGTAAAATTATTGTCACTGATTTATCAATACACATAAAA
TCCTCCCTCACAGGGCATTTTGAAAATGAATGTGGTGTTTGTGTTATGTT
ACAAAAATTGAGCTATTTTGAGAAGAATAAAATGTAAAAGAGCTCATTTA
AAGAATGTGCGGAAATATTGTACCAGACAATCTACACTGTAGTACTTTGA
AAAGGTAAGCTTTTTGTCAGTGTCTGACCCTAAGATTTCCTAAAAGAATG
TTCTTATTTTTAGAATGGCGTTTGAACAATTTCGTGTTGCAATCATTCAA
TTGTCAAACCATCCAAAATGCCCAGGATTTGCTCGAAATTTATTAATCAG
TATTATTTCATTAGCCGCTCGTTTAGCCCCAGCTGCTGCCCCTGCACAGT
GATTGGTTCTTCTTTTCAATTCTGAATGCTGATTGGACAACAATGCTCGA
TTCTGTTCCCTCATTGAAGTAACCTTTCGGCCTTAAGGAATAGTATAAAT
AACTAGCTTTATTTTTCACATTTCCCTCGCACTTGTAGAGTGATTATCTA
AAAATTAGTTTTGTATATATTAAAGAATTTGATGTAAACCAGGAAATATA
CGATAAGAAGAATAAGCTCTTGTTCGTTTGTGATATTATTTCGTTCTCCT
TTTTCTTCCATTCATTTTATTGACTTTTCTTTTACTTTGTCTGAGGCTTT

Coding sequence (CDS) from alignment at scaffold_205:48016..52165-

>TCONS_00051842 ID=TCONS_00051842|Name=TCONS_00051842|organism=Clytia hemisphaerica|type=CDS|length=7236bp|location=Sequence derived from alignment at scaffold_205:48016..52165- (Clytia hemisphaerica)
AATGGCGTTTGAACAATTTCGTGTTGCAATCATTCAATTGTCAAACCATC
CAAAATGCCCAGGATTTGCTCGAAATTTATTAATCAGTATTATTTCATTA
GCCGCTCGTTTAGCCCCAGCTGCTGCCCCTGCACAGTGATGGACAAGCTT
CCATGCTGGTGCCCTTCTTTTACTATCGGTTCTTACAATTACGCTATACT
TCGCAAAGGAACCCATACTCCAGACTCCATCAATATATCAACAAATTAAC
GAATTCGGAGATGCAGCGTCAAATCTTTTTATTTGTTGCAACAAATGAAA
TCGTCGTCTTTGTCGTGTCTATTCTTATGGTCATAAGGCAAGTGGTAGCA
ATGGCGCTCTAGCCCAAAATGGTATTATCACCGATATTCCTCTTCGCTCT
AATGCACGCATCTTCATACACCAAGAAAGTACTGAACGGCATTGAATTCA
GCATGGTTTTCGCAAGGAGGCTGATGGTGGAAGATAGTTTACATTACCTT
CTTTACAGTGTCTTATTCCTGATGGCAGGTTCTGCTACCAGCCTGACGTT
AGTAGGAATTCTTATAAACGGGTGCTCCTTGGTTCCGCAGCTATTTCGGC
ATTGAGGCTTCATCAGAGATTACCTAACTTTTTGATGCAAGACCGGAGTG
CAACTGTGTTATGGTTGATCAGATTGTACATTGTTGTCAGTACATTTTTG
TACATTGTGCCCTTGATGGGATGGCAGATAGTGAGAATTCAGCCAGTAGT
GACAATCAAGAAAATCGAAGTAACAATGCTGCTAATGAAGCAGTTGGAAT
ACAGAATGGCGTTTGAACAATTTCGTGTTGCAATCATTCAATTGTCAAAC
CATCCAAAATGCCCAGGATTTGCTCGAAATTTATTAATCAGTATTATTTC
ATTAGCCGCTCGTTTAGCCCCAGCTGCTGCCCCTGCACAGTGATGGACAA
GCTTCCATGCTGGTGCCCTTCTTTTACTATCGGTTCTTACAATTACGCTA
TACTTCGCAAAGGAACCCATACTCCAGACTCCATCAATATATCAACAAAT
TAACGAATTCGGAGATGCAGCGTCAAATCTTTTTATTTGTTGCAACAAAT
GAAATCGTCGTCTTTGTCGTGTCTATTCTTATGGTCATAAGGCAAGTGGT
AGCAATGGCGCTCTAGCCCAAAATGGTATTATCACCGATATTCCTCTTCG
CTCTAATGCACGCATCTTCATACACCAAGAAAGTACTGAACGGCATTGAA
TTCAGCATGGTTTTCGCAAGGAGGCTGATGGTGGAAGATAGTTTACATTA
CCTTCTTTACAGTGTCTTATTCCTGATGGCAGGTTCTGCTACCAGCCTGA
CGTTAGTAGGAATTCTTATAAACGGGTGCTCCTTGGTTCCGCAGCTATTT
CGGCATTGAGGCTTCATCAGAGATTACCTAACTTTTTGATGCAAGACCGG
AGTGCAACTGTGTTATGGTTGATCAGATTGTACATTGTTGTCAGTACATT
TTTGTACATTGTGCCCTTGATGGGATGGCAGATAGTGAGAATTCAGCCAG
TAGTGACAATCAAGAAAATCGAAGTAACAATGCTGCTAATGAAGCAGTTG
GAATACAGAATGGCGTTTGAACAATTTCGTGTTGCAATCATTCAATTGTC
AAACCATCCAAAATGCCCAGGATTTGCTCGAAATTTATTAATCAGTATTA
TTTCATTAGCCGCTCGTTTAGCCCCAGCTGCTGCCCCTGCACAGTGATGG
ACAAGCTTCCATGCTGGTGCCCTTCTTTTACTATCGGTTCTTACAATTAC
GCTATACTTCGCAAAGGAACCCATACTCCAGACTCCATCAATATATCAAC
AAATTAACGAATTCGGAGATGCAGCGTCAAATCTTTTTATTTGTTGCAAC
AAATGAAATCGTCGTCTTTGTCGTGTCTATTCTTATGGTCATAAGGCAAG
TGGTAGCAATGGCGCTCTAGCCCAAAATGGTATTATCACCGATATTCCTC
TTCGCTCTAATGCACGCATCTTCATACACCAAGAAAGTACTGAACGGCAT
TGAATTCAGCATGGTTTTCGCAAGGAGGCTGATGGTGGAAGATAGTTTAC
ATTACCTTCTTTACAGTGTCTTATTCCTGATGGCAGGTTCTGCTACCAGC
CTGACGTTAGTAGGAATTCTTATAAACGGGTGCTCCTTGGTTCCGCAGCT
ATTTCGGCATTGAGGCTTCATCAGAGATTACCTAACTTTTTGATGCAAGA
CCGGAGTGCAACTGTGTTATGGTTGATCAGATTGTACATTGTTGTCAGTA
CATTTTTGTACATTGTGCCCTTGATGGGATGGCAGATAGTGAGAATTCAG
CCAGTAGTGACAATCAAGAAAATCGAAGTAACAATGCTGCTAATGAAGCA
GTTGGAATACAGAATGGCGTTTGAACAATTTCGTGTTGCAATCATTCAAT
TGTCAAACCATCCAAAATGCCCAGGATTTGCTCGAAATTTATTAATCAGT
ATTATTTCATTAGCCGCTCGTTTAGCCCCAGCTGCTGCCCCTGCACAGTG
ATGGACAAGCTTCCATGCTGGTGCCCTTCTTTTACTATCGGTTCTTACAA
TTACGCTATACTTCGCAAAGGAACCCATACTCCAGACTCCATCAATATAT
CAACAAATTAACGAATTCGGAGATGCAGCGTCAAATCTTTTTATTTGTTG
CAACAAATGAAATCGTCGTCTTTGTCGTGTCTATTCTTATGGTCATAAGG
CAAGTGGTAGCAATGGCGCTCTAGCCCAAAATGGTATTATCACCGATATT
CCTCTTCGCTCTAATGCACGCATCTTCATACACCAAGAAAGTACTGAACG
GCATTGAATTCAGCATGGTTTTCGCAAGGAGGCTGATGGTGGAAGATAGT
TTACATTACCTTCTTTACAGTGTCTTATTCCTGATGGCAGGTTCTGCTAC
CAGCCTGACGTTAGTAGGAATTCTTATAAACGGGTGCTCCTTGGTTCCGC
AGCTATTTCGGCATTGAGGCTTCATCAGAGATTACCTAACTTTTTGATGC
AAGACCGGAGTGCAACTGTGTTATGGTTGATCAGATTGTACATTGTTGTC
AGTACATTTTTGTACATTGTGCCCTTGATGGGATGGCAGATAGTGAGAAT
TCAGCCAGTAGTGACAATCAAGAAAATCGAAGTAACAATGCTGCTAATGA
AGCAGTTGGAATACAGAATGGCGTTTGAACAATTTCGTGTTGCAATCATT
CAATTGTCAAACCATCCAAAATGCCCAGGATTTGCTCGAAATTTATTAAT
CAGTATTATTTCATTAGCCGCTCGTTTAGCCCCAGCTGCTGCCCCTGCAC
AGTGATGGACAAGCTTCCATGCTGGTGCCCTTCTTTTACTATCGGTTCTT
ACAATTACGCTATACTTCGCAAAGGAACCCATACTCCAGACTCCATCAAT
ATATCAACAAATTAACGAATTCGGAGATGCAGCGTCAAATCTTTTTATTT
GTTGCAACAAATGAAATCGTCGTCTTTGTCGTGTCTATTCTTATGGTCAT
AAGGCAAGTGGTAGCAATGGCGCTCTAGCCCAAAATGGTATTATCACCGA
TATTCCTCTTCGCTCTAATGCACGCATCTTCATACACCAAGAAAGTACTG
AACGGCATTGAATTCAGCATGGTTTTCGCAAGGAGGCTGATGGTGGAAGA
TAGTTTACATTACCTTCTTTACAGTGTCTTATTCCTGATGGCAGGTTCTG
CTACCAGCCTGACGTTAGTAGGAATTCTTATAAACGGGTGCTCCTTGGTT
CCGCAGCTATTTCGGCATTGAGGCTTCATCAGAGATTACCTAACTTTTTG
ATGCAAGACCGGAGTGCAACTGTGTTATGGTTGATCAGATTGTACATTGT
TGTCAGTACATTTTTGTACATTGTGCCCTTGATGGGATGGCAGATAGTGA
GAATTCAGCCAGTAGTGACAATCAAGAAAATCGAAGTAACAATGCTGCTA
ATGAAGCAGTTGGAATACAGAATGGCGTTTGAACAATTTCGTGTTGCAAT
CATTCAATTGTCAAACCATCCAAAATGCCCAGGATTTGCTCGAAATTTAT
TAATCAGTATTATTTCATTAGCCGCTCGTTTAGCCCCAGCTGCTGCCCCT
GCACAGTGATGGACAAGCTTCCATGCTGGTGCCCTTCTTTTACTATCGGT
TCTTACAATTACGCTATACTTCGCAAAGGAACCCATACTCCAGACTCCAT
CAATATATCAACAAATTAACGAATTCGGAGATGCAGCGTCAAATCTTTTT
ATTTGTTGCAACAAATGAAATCGTCGTCTTTGTCGTGTCTATTCTTATGG
TCATAAGGCAAGTGGTAGCAATGGCGCTCTAGCCCAAAATGGTATTATCA
CCGATATTCCTCTTCGCTCTAATGCACGCATCTTCATACACCAAGAAAGT
ACTGAACGGCATTGAATTCAGCATGGTTTTCGCAAGGAGGCTGATGGTGG
AAGATAGTTTACATTACCTTCTTTACAGTGTCTTATTCCTGATGGCAGGT
TCTGCTACCAGCCTGACGTTAGTAGGAATTCTTATAAACGGGTGCTCCTT
GGTTCCGCAGCTATTTCGGCATTGAGGCTTCATCAGAGATTACCTAACTT
TTTGATGCAAGACCGGAGTGCAACTGTGTTATGGTTGATCAGATTGTACA
TTGTTGTCAGTACATTTTTGTACATTGTGCCCTTGATGGGATGGCAGATA
GTGAGAATTCAGCCAGTAGTGACAATCAAGAAAATCGAAGTAACAATGCT
GCTAATGAAGCAGTTGGAATACAGAATGGCGTTTGAACAATTTCGTGTTG
CAATCATTCAATTGTCAAACCATCCAAAATGCCCAGGATTTGCTCGAAAT
TTATTAATCAGTATTATTTCATTAGCCGCTCGTTTAGCCCCAGCTGCTGC
CCCTGCACAGTGATGGACAAGCTTCCATGCTGGTGCCCTTCTTTTACTAT
CGGTTCTTACAATTACGCTATACTTCGCAAAGGAACCCATACTCCAGACT
CCATCAATATATCAACAAATTAACGAATTCGGAGATGCAGCGTCAAATCT
TTTTATTTGTTGCAACAAATGAAATCGTCGTCTTTGTCGTGTCTATTCTT
ATGGTCATAAGGCAAGTGGTAGCAATGGCGCTCTAGCCCAAAATGGTATT
ATCACCGATATTCCTCTTCGCTCTAATGCACGCATCTTCATACACCAAGA
AAGTACTGAACGGCATTGAATTCAGCATGGTTTTCGCAAGGAGGCTGATG
GTGGAAGATAGTTTACATTACCTTCTTTACAGTGTCTTATTCCTGATGGC
AGGTTCTGCTACCAGCCTGACGTTAGTAGGAATTCTTATAAACGGGTGCT
CCTTGGTTCCGCAGCTATTTCGGCATTGAGGCTTCATCAGAGATTACCTA
ACTTTTTGATGCAAGACCGGAGTGCAACTGTGTTATGGTTGATCAGATTG
TACATTGTTGTCAGTACATTTTTGTACATTGTGCCCTTGATGGGATGGCA
GATAGTGAGAATTCAGCCAGTAGTGACAATCAAGAAAATCGAAGTAACAA
TGCTGCTAATGAAGCAGTTGGAATACAGAATGGCGTTTGAACAATTTCGT
GTTGCAATCATTCAATTGTCAAACCATCCAAAATGCCCAGGATTTGCTCG
AAATTTATTAATCAGTATTATTTCATTAGCCGCTCGTTTAGCCCCAGCTG
CTGCCCCTGCACAGTGATGGACAAGCTTCCATGCTGGTGCCCTTCTTTTA
CTATCGGTTCTTACAATTACGCTATACTTCGCAAAGGAACCCATACTCCA
GACTCCATCAATATATCAACAAATTAACGAATTCGGAGATGCAGCGTCAA
ATCTTTTTATTTGTTGCAACAAATGAAATCGTCGTCTTTGTCGTGTCTAT
TCTTATGGTCATAAGGCAAGTGGTAGCAATGGCGCTCTAGCCCAAAATGG
TATTATCACCGATATTCCTCTTCGCTCTAATGCACGCATCTTCATACACC
AAGAAAGTACTGAACGGCATTGAATTCAGCATGGTTTTCGCAAGGAGGCT
GATGGTGGAAGATAGTTTACATTACCTTCTTTACAGTGTCTTATTCCTGA
TGGCAGGTTCTGCTACCAGCCTGACGTTAGTAGGAATTCTTATAAACGGG
TGCTCCTTGGTTCCGCAGCTATTTCGGCATTGAGGCTTCATCAGAGATTA
CCTAACTTTTTGATGCAAGACCGGAGTGCAACTGTGTTATGGTTGATCAG
ATTGTACATTGTTGTCAGTACATTTTTGTACATTGTGCCCTTGATGGGAT
GGCAGATAGTGAGAATTCAGCCAGTAGTGACAATCAAGAAAATCGAAGTA
ACAATGCTGCTAATGAAGCAGTTGGAATACAGAATGGCGTTTGAACAATT
TCGTGTTGCAATCATTCAATTGTCAAACCATCCAAAATGCCCAGGATTTG
CTCGAAATTTATTAATCAGTATTATTTCATTAGCCGCTCGTTTAGCCCCA
GCTGCTGCCCCTGCACAGTGATGGACAAGCTTCCATGCTGGTGCCCTTCT
TTTACTATCGGTTCTTACAATTACGCTATACTTCGCAAAGGAACCCATAC
TCCAGACTCCATCAATATATCAACAAATTAACGAATTCGGAGATGCAGCG
TCAAATCTTTTTATTTGTTGCAACAAATGAAATCGTCGTCTTTGTCGTGT
CTATTCTTATGGTCATAAGGCAAGTGGTAGCAATGGCGCTCTAGCCCAAA
ATGGTATTATCACCGATATTCCTCTTCGCTCTAATGCACGCATCTTCATA
CACCAAGAAAGTACTGAACGGCATTGAATTCAGCATGGTTTTCGCAAGGA
GGCTGATGGTGGAAGATAGTTTACATTACCTTCTTTACAGTGTCTTATTC
CTGATGGCAGGTTCTGCTACCAGCCTGACGTTAGTAGGAATTCTTATAAA
CGGGTGCTCCTTGGTTCCGCAGCTATTTCGGCATTGAGGCTTCATCAGAG
ATTACCTAACTTTTTGATGCAAGACCGGAGTGCAACTGTGTTATGGTTGA
TCAGATTGTACATTGTTGTCAGTACATTTTTGTACATTGTGCCCTTGATG
GGATGGCAGATAGTGAGAATTCAGCCAGTAGTGACAATCAAGAAAATCGA
AGTAACAATGCTGCTAATGAAGCAGTTGGAATACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032814XLOC_032814Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051842-exon-scaffold_205-1575043694:51832..52165TCONS_00051842-exon-scaffold_205-1575043694:51832..52165Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1575043694:50706..50800TCONS_00051842-exon-scaffold_205-1575043694:50706..50800Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1575043694:50402..50486TCONS_00051842-exon-scaffold_205-1575043694:50402..50486Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1575043694:49909..50011TCONS_00051842-exon-scaffold_205-1575043694:49909..50011Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1575043694:49705..49772TCONS_00051842-exon-scaffold_205-1575043694:49705..49772Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1575043694:49529..49560TCONS_00051842-exon-scaffold_205-1575043694:49529..49560Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1575043694:49114..49227TCONS_00051842-exon-scaffold_205-1575043694:49114..49227Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1575043694:48704..48787TCONS_00051842-exon-scaffold_205-1575043694:48704..48787Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1575043694:48016..48452TCONS_00051842-exon-scaffold_205-1575043694:48016..48452Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1510915933:51832..52165TCONS_00051842-exon-scaffold_205-1510915933:51832..52165Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1510915933:50706..50800TCONS_00051842-exon-scaffold_205-1510915933:50706..50800Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1510915933:50402..50486TCONS_00051842-exon-scaffold_205-1510915933:50402..50486Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1510915933:49909..50011TCONS_00051842-exon-scaffold_205-1510915933:49909..50011Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1510915933:49705..49772TCONS_00051842-exon-scaffold_205-1510915933:49705..49772Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1510915933:49529..49560TCONS_00051842-exon-scaffold_205-1510915933:49529..49560Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1510915933:49114..49227TCONS_00051842-exon-scaffold_205-1510915933:49114..49227Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1510915933:48704..48787TCONS_00051842-exon-scaffold_205-1510915933:48704..48787Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1510915933:48016..48452TCONS_00051842-exon-scaffold_205-1510915933:48016..48452Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1491911889:51832..52165TCONS_00051842-exon-scaffold_205-1491911889:51832..52165Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1491911889:50706..50800TCONS_00051842-exon-scaffold_205-1491911889:50706..50800Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1491911889:50402..50486TCONS_00051842-exon-scaffold_205-1491911889:50402..50486Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1491911889:49909..50011TCONS_00051842-exon-scaffold_205-1491911889:49909..50011Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1491911889:49705..49772TCONS_00051842-exon-scaffold_205-1491911889:49705..49772Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1491911889:49529..49560TCONS_00051842-exon-scaffold_205-1491911889:49529..49560Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1491911889:49114..49227TCONS_00051842-exon-scaffold_205-1491911889:49114..49227Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1491911889:48704..48787TCONS_00051842-exon-scaffold_205-1491911889:48704..48787Clytia hemisphaericaexon
TCONS_00051842-exon-scaffold_205-1491911889:48016..48452TCONS_00051842-exon-scaffold_205-1491911889:48016..48452Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051842-proteinTCONS_00051842-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:48016..52165 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
145.168	132.001	54.4299	39.7084	31.175	24.7795	20.0357	19.6714	23.7921	29.9944	21.9949	14.4958	20.6078	15.2461	17.289	21.8152	31.2364	27.7384	12.7122	22.1121	23.5728	24.6429	69.1819	60.5817	26.1514	25.0156	32.6801	35.6369	50.1735	52.931
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005344TMEM33/Pom33
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00051842 vs. Swiss-Prot (Human)
Match: TMM33 (Transmembrane protein 33 OS=Homo sapiens GN=TMEM33 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 2.824e-58
Identity = 98/224 (43.75%), Postives = 143/224 (63.84%), Query Frame = 2 
Query:  317 EAVGIQNFLMQDRSATVLWLIRLYIVVSTFLYIVPLMGPDVSRNSYKRVLLGSAAISALRLHQRLPGIEFSMVFARRLMVEDSLHYLLYSVLFLMAGSATMVLSPIFLFALMHASSYTKKVLNASGSNGALAQKLHQYINKLTNSEMQRQIFLFVATNEIVVFVVSILMVISGQASMLVPFFYYRFLQLRYTSQRNPYSRMAFEQFRVAIIQLSNHPKCPGFAR 988
            +  G   F+M ++  T +WL RL+ V  + L+++PL+G   + + Y+R LL +A  SALRLHQRLP  + S  F  + ++EDS HYLLYS++F+ +   TM + P+ LF+L+HA++YTKKVL+A GSN      L   ++KL  S  Q+ I  F+A NEI +   ++ M+ SGQ S+L PF YYRFL LRY+S+RNPY R  F + R+ +  +   P CP F R
Sbjct:   10 QGAGAVQFMMTNKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQRALLANALTSALRLHQRLPHFQLSRAFLAQALLEDSCHYLLYSLIFVNSYPVTMSIFPVLLFSLLHAATYTKKVLDARGSNS--LPLLRSVLDKL--SANQQNILKFIACNEIFLMPATVFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRTLFNELRIVVEHIIMKPACPLFVR 229
The following BLAST results are available for this feature:
BLAST of TCONS_00051842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMM332.824e-5843.75Transmembrane protein 33 OS=Homo sapiens GN=TMEM33... [more]
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