TCONS_00052254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052254
Unique NameTCONS_00052254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2098

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052254 ID=TCONS_00052254|Name=TCONS_00052254|organism=Clytia hemisphaerica|type=transcript|length=2098bp
ctcaattctccagtggggctggggccccaacgggtctgtgacacaggagt
gTATAATATAATTTGTTTTGCATTCAAAAGTCTAAATAAAAACGATAGTA
TAgataaataacaaaataatgaCATGTGACGAAGGAGAGCCATCATGGTA
AAAGACAGTTATCAGAACATAGCAAACGGTCTAACCAATGATGTACTTTT
GGCGATATCAGCAGGACTTTCCATCCTAGGATGTACACTAATACTCACCA
CGTACATGTGCTACAAAGAAATCAGAACTGTGTCCAGACATATAGTGGTT
TGTATAAGCATCTCAGATATCATCACAACTGCATCCAATTTGTCAGCAAT
CTTCATTTCACCAGAAATAGATTCTGAAACAGATGAAATTGACAATATAT
CCTGTACTGTACAAAGCTTTGTAGGAACCTCAGCTGTTTTATGGTCTTTT
CTATGGACTATGGTACTGGCTATGTATTTGTATCTTGATTTGGTGAAAGA
GAATAAGACTCTTGGGAAACGTTTAATTTGGCCCTGGTCTCATTTAATTT
GCTGGATCGCACCGTTAGGGATCAACATGGTAgctttgtttttacataaa
ctTGGGAATTCAGGTGATCGTAATACTGCTGGTTGGTGCTGGATCAGCGT
CTTTGTGGACAACTATGGCGACGCCAAGCTGTGGATGTTGGTGGATGGTA
AAGGAATCGAACTGTTGACCTACGTTGTGATCGTCATTTTGTACTCACGG
ATGAAATTATGGTCCATCAGACAGATTAAGATACCAAAACAAAATGAAGG
TTCGCACTTATTACAACGTAATTCACTGGATGCTGCAAGATACACGGATA
AGAAGATTATATTGATTCCAATCTTGTTCGTTTTATTGAGGATATGGGGA
ACGATCAGGTTCTTCATGTTGTTGAGGACTGAAACATTAGCCTTCAAAGG
GGATATCACAGTATTTGAGACTGCATTGCTCTACTTACAGACAATTGGTG
ATAATTTACAAGGAGCCATCAattgtattttattttgttgCATGACACCG
GTTGTCCGAAAACGAATCAACAAATCAGTCACGAGCATGCGCAGACAGAG
ATTTCATTTGTATGATCATTTGGACAGTACCTCGGATACTTCTTCCAGAA
TATATCAACCAATTGATTGAGGAACGGGTAAATCACCGATAATCTGTAAT
TTCAGCTTCATACAATTTTCTAGGTTCCCAAATTACAAAAGCAGTGAGTT
TATGCATTTCCCATTTTAACAACTTCTGTCTCTAAAATTTGAGACAGTAA
AAGTGCCGATTAACAGTTGTTTTTTCCCGGACTGGATGTAAATTAATCAA
AAACTAACAGTCGTTAGTAATCATGGGACTAATATAGGTAAGGCTGTTGG
TAGCTGTCGGTGTAAATGAGAATCATTGTAATGTCTTTCAAATATACACt
acagtagactcccggttattcgaagctccAAGGGGGACCGGAAGCTCGAA
TAGCTGAAAAAATTGTTTCCTGCCTGATTTTTAACTTAACCTTAAATGGG
ATGGCATTTTCTGAATTAAGGCATTTTGGGTTCAGGAAAGTTTGCCAAGA
TGACTTTTTACTTTCTGAAAagtttcggtgtttgaagaaaaaaagtaatG
GTATTTCGGTATCAAACATGCCTTGGATCTTAAGCATTTTTCCTGTCGAT
GTTGAATGTGATCCATGAAAAATGCATCGGTATTTTCGGTGCTCGCAGCC
CCCTTTACGTATGTCCATATTTAGGTTTATCTATTTTCAGATGATCGTAA
GCGATTATTAGTTAACAATTATGCGGATTTAGTAATAACGAGTAGAATTT
TAAGCATGTATTATCAGTAATTTATTATTTCCAAGTAAttattaaggaat
aagtgtaaAGAGATTTTAATGAGAATTTAATAAGAAtcatttgtaaattt
tgaaatagaCATTTTTTAGAAGAATAAAGATGCCATATATGATAAAGTTA
TGATTTCTTGAATAGGGTTTCCAATGATAAAaggttttgtttctaaataa
gagtgatatcgtttgcttactcatcaattttaattcacaagctttttc
Run BLAST on NCBI

protein sequence of TCONS_00052254-protein

>TCONS_00052254-protein ID=TCONS_00052254-protein|Name=TCONS_00052254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MVKDSYQNIANGLTNDVLLAISAGLSILGCTLILTTYMCYKEIRTVSRHI
VVCISISDIITTASNLSAIFISPEIDSETDEIDNISCTVQSFVGTSAVLW
SFLWTMVLAMYLYLDLVKENKTLGKRLIWPWSHLICWIAPLGINMVALFL
HKLGNSGDRNTAGWCWISVFVDNYGDAKLWMLVDGKGIELLTYVVIVILY
SRMKLWSIRQIKIPKQNEGSHLLQRNSLDAARYTDKKIILIPILFVLLRI
WGTIRFFMLLRTETLAFKGDITVFETALLYLQTIGDNLQGAINCILFCCM
TPVVRKRINKSVTSMRRQRFHLYDHLDSTSDTSSRIYQPID
Run BLAST on NCBI

transcript from alignment at scaffold_213:682839..686901+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052254 ID=TCONS_00052254|Name=TCONS_00052254|organism=Clytia hemisphaerica|type=transcript|length=4063bp|location=Sequence derived from alignment at scaffold_213:682839..686901+ (Clytia hemisphaerica)
ctcaattctccagtggggctggggccccaacgggtctgtgacacaggagt
gTATAATATAATTTGTTTTGCATTCAAAAGTCTAAATAAAAACGATAGTA
TAgataaataacaaaataatgaCATGTGACGAAGGAGAGCCATCATGGTA
AAAGACAGTTATCAGAACATAGCAAACGGTCTAACCAATGATGTACTTTT
GGCGATATCAGCAGGACTTTCCATCCTAGGATGTACACTAATACTCACCA
CGTACATGTGCTACAAAGAAATCAGAACTGTGTCCAGACATATAGTGGTT
TGTATAAGCATCTCAGATATCATCACAACTGCATCCAATTTGTCAGCAAT
CTTCATTTCACCAGAAATAGATTCTGAAACAGATGAAATTGACAATATAT
CCTGTACTGTACAAAGCTTTGTAGGAACCTCAGCTGTTTTATGGTCTTTT
CTATGGACTATGGTACTGGCTATGTATTTGTATCTTGATTTGGTGAAAGA
GAATAAGACTCTTGGGAAACGTTTAATTTGGCCCTGGTCTCATTTAATTT
GCTGGATCGCACCGTTAGGGATCAACATGGTAgctttgtttttacataaa
ctTGGGAATTCAGGTGATCGTAATACTGCTGGTTGGTGCTGGATCAGCGT
CTTTGGTAAAACaacatttctttttgtttttattcaagaaTGTGACGAAT
ATAATTCTAGTTGAGGAGCTATTTTTAAAATGCAAGATCAAGCGTGCCTA
TCCACCCTTAATCTTAAAAACTAGACCAACAGACATTTCTGTCATAGAGA
TTTAGGCTCTATACAGAGTCTTTCTCATAGTTTAAATCAGATCAATAAAT
CTTATTTTTCCCTAGTGTTTACTTTATAGAACGTCCCTGGTTTAAAGCTA
TCTTCTGAAGTCGGTTTTGACTAACATAAATATCATTATAACAATGTTGT
GGCGATTATTCCCGCTAAGTTTGTTTCTCGACTATGGTGTTATGATCGTA
CAGGAAAAAGAGGGCAACGTCTATGtagaaaaatggaaagaaaaatttAG
GCAGAAAAGATCTGTAGAGCTCATTGTAAGAGTGCTGGCCCAAGCTTGTA
GGTTTTGTTTCCGGTAAAAGCTAGAACAAGGTGCGAACTCAAATTGTGTC
AAGACTTAATTTTTTGTAACGACAATAGAGGAAAAATCTATCAATATTTT
TGACAGctcagattttttttattgcttCTACAAACACTGAAATGCTAAAA
AGGTCATAAGATGACAATAGGGAAAGCTTGTGTGTGTGAGGTTGAATTAC
AGGATTTGTTTTTCATTTGCATGGTCTTTGAATCTCTTGAGAGGCTAAGA
GGAAAACAAGCAAAGGATAAGATATGGTATGGCTGTGATAAACGGTTCTG
CAGATAAGAAGTGGGCTTTGTGCAGGCAGTGTAGATGAACTTGTATAGGA
TAGAACAGCCAGAACTTCAAAATAGGTTtatatatatatgtgaagaaata
agaatttctgtccaactatattcactcaggagatttgggtggcagagcag
catatatATTAACTTGGAAACGGTTGGTTAAATATCAATTTTAAGATCAg
cagcttttgaaaaaaattacattttgatATAATTTACGAAAATACAATAA
GGCGAGGGCTGAGAAAATACCGTCACATTTTCTTATTCTAGTGGACAACT
ATGGCGACGCCAAGCTGTGGATGTTGGTGGATGGTAAAGGAATCGAACTG
TTGACCTACGTTGTGATCGTCATTTTGTACTCACGGATGAAATTATGGTC
CATCAGACAGATTAAGGTATGACAAGATTTAATCAGAGTTTATCCAAGTC
AAACCGAGTTAGGTCAAGTAGATCATAATGCCATAACTCGTTTACTTTGT
TAATTTGATATGAATTacactaatttttttttatctttttattgtGAATT
CAAACTGATTATGTCGAGTTGATCCGAGTTAACCCTAAACATAATATCCA
CGCATCTAACACTAGATACCAAAACAAAATGAAGGTTCGCACTTATTACA
ACGTAATTCACTGGATGCTGCAAGATACACGGATAAGAAGATTATATTGA
TTCCAATCTTGTTCGTTTTATTGAGGATATGGGGAACGATCAGGTTCTTC
ATGTTGTTGAGGACTGAAACATTAGCCTTCAAAGGGGATATCACAGTATT
TGAGACTGCATTGCTCTACTTACAGGTAAGTTATAATCATTGATAGAACA
ATTTTCATTGCTGTAATGTTTGCTCCTACTATAGTACtattttaattttc
tgatttataAGCTTTCTTGCTCTTCTATTACAATTCATAATAGCATACCG
CAGTGAATCTAAAAATAGACATTGATTTTTCTGTTTGACCGAAATTCAAT
CCCATCACCCTTCGCGTTAACTACGCCTGCATGCAAATTACACTCaacta
caaagaaaaagtaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNtgactttcacgactttttaattaagacgaaaaggattgtg
ggattgattttcggtcaagtgttaaaagtaataattatgacgtttgcata
acggTGTGCTATTCACATCAGAATATTTTGAGACTCATTTGGATTTTTCA
ATTCCTAAATGCTGAGTATACTATCAAGGTAACAGCTTTGAAATTGTAGC
AAAGGTACCATTGTctaggctgcgcgcatccccagaatttattttgatat
attatatcaaatcatatcagagtgGATATATGCAGCCTAACCATTGTCCA
GAAAGTAAAGACACAAAGCAATGGACAAACTTAGTTGCGTCGAACATGAA
AAAATCTTACTAAAATCTTTCTGGCCACTGATTAGAACAAGCCAAAACCG
TATTCCTTTCTGCATTTCCTTTTTTTACGGGCAGAAGTTTCCCATTTTAT
TTCAGACAATTGGTGATAATTTACAAGGAGCCATCAattgtattttattt
tgttgCATGACACCGGTTGTCCGAAAACGAATCAACAAATCAGTCACGAG
CATGCGCAGACAGAGATTTCATTTGTATGATCATTTGGACAGTACCTCGG
ATACTTCTTCCAGAATATATCAACCAATTGATTGAGGAACGGGTAAATCA
CCGATAATCTGTAATTTCAGCTTCATACAATTTTCTAGGTTCCCAAATTA
CAAAAGCAGTGAGTTTATGCATTTCCCATTTTAACAACTTCTGTCTCTAA
AATTTGAGACAGTAAAAGTGCCGATTAACAGTTGTTTTTTCCCGGACTGG
ATGTAAATTAATCAAAAACTAACAGTCGTTAGTAATCATGGGACTAATAT
AGGTAAGGCTGTTGGTAGCTGTCGGTGTAAATGAGAATCATTGTAATGTC
TTTCAAATATACACtacagtagactcccggttattcgaagctccAAGGGG
GACCGGAAGCTCGAATAGCTGAAAAAATTGTTTCCTGCCTGATTTTTAAC
TTAACCTTAAATGGGATGGCATTTTCTGAATTAAGGCATTTTGGGTTCAG
GAAAGTTTGCCAAGATGACTTTTTACTTTCTGAAAagtttcggtgtttga
agaaaaaaagtaatGGTATTTCGGTATCAAACATGCCTTGGATCTTAAGC
ATTTTTCCTGTCGATGTTGAATGTGATCCATGAAAAATGCATCGGTATTT
TCGGTGCTCGCAGCCCCCTTTACGTATGTCCATATTTAGGTTTATCTATT
TTCAGATGATCGTAAGCGATTATTAGTTAACAATTATGCGGATTTAGTAA
TAACGAGTAGAATTTTAAGCATGTATTATCAGTAATTTATTATTTCCAAG
TAAttattaaggaataagtgtaaAGAGATTTTAATGAGAATTTAATAAGA
AtcatttgtaaattttgaaatagaCATTTTTTAGAAGAATAAAGATGCCA
TATATGATAAAGTTATGATTTCTTGAATAGGGTTTCCAATGATAAAaggt
tttgtttctaaataagagtgatatcgtttgcttactcatcaattttaatt
cacaagctttttc

Coding sequence (CDS) from alignment at scaffold_213:682839..686901+

>TCONS_00052254 ID=TCONS_00052254|Name=TCONS_00052254|organism=Clytia hemisphaerica|type=CDS|length=4104bp|location=Sequence derived from alignment at scaffold_213:682839..686901+ (Clytia hemisphaerica)
ATGGTAAAAGACAGTTATCAGAACATAGCAAACGGTCTAACCAATGATGT
ACTTTTGGCGATATCAGCAGGACTTTCCATCCTAGGATGTACACTAATAC
TCACCACGTACATGTGCTACAAAGAAATCAGAACTGTGTCCAGACATATA
GTGGTTTGTATAAGCATCTCAGATATCATCACAACTGCATCCAATTTGTC
AGCAATCTTCATTTCACCAGAAATAGATTCTGAAACAGATGAAATTGACA
ATATATCCTGTACTGTACAAAGCTTTGTAGGAACCTCAGCTGTTTTATGG
TCTTTTCTATGGACTATGGTACTGGCTATGTATTTGTATCTTGATTTGGT
GAAAGAGAATAAGACTCTTGGGAAACGTTTAATTTGGCCCTGGTCTCATT
TAATTTGCTGGATCGCACCGTTAGGGATCAACATGGTAgctttgttttta
cataaactTGGGAATTCAGGTGATCGTAATACTGCTGGTTGGTGCTGGAT
CAGCGTCTTTGTGGACAACTATGGCGACGCCAAGCTGTGGATGTTGGTGG
ATGGTAAAGGAATCGAACTGTTGACCTACGTTGTGATCGTCATTTTGTAC
TCACGGATGAAATTATGGTCCATCAGACAGATTAAGATACCAAAACAAAA
TGAAGGTTCGCACTTATTACAACGTAATTCACTGGATGCTGCAAGATACA
CGGATAAGAAGATTATATTGATTCCAATCTTGTTCGTTTTATTGAGGATA
TGGGGAACGATCAGGTTCTTCATGTTGTTGAGGACTGAAACATTAGCCTT
CAAAGGGGATATCACAGTATTTGAGACTGCATTGCTCTACTTACAGACAA
TTGGTGATAATTTACAAGGAGCCATCAattgtattttattttgttgCATG
ACACCGGTTGTCCGAAAACGAATCAACAAATCAGTCACGAGCATGCGCAG
ACAGAGATTTCATTTGTATGATCATTTGGACAGTACCTCGGATACTTCTT
CCAGAATATATCAACCAATTGATTGAATGGTAAAAGACAGTTATCAGAAC
ATAGCAAACGGTCTAACCAATGATGTACTTTTGGCGATATCAGCAGGACT
TTCCATCCTAGGATGTACACTAATACTCACCACGTACATGTGCTACAAAG
AAATCAGAACTGTGTCCAGACATATAGTGGTTTGTATAAGCATCTCAGAT
ATCATCACAACTGCATCCAATTTGTCAGCAATCTTCATTTCACCAGAAAT
AGATTCTGAAACAGATGAAATTGACAATATATCCTGTACTGTACAAAGCT
TTGTAGGAACCTCAGCTGTTTTATGGTCTTTTCTATGGACTATGGTACTG
GCTATGTATTTGTATCTTGATTTGGTGAAAGAGAATAAGACTCTTGGGAA
ACGTTTAATTTGGCCCTGGTCTCATTTAATTTGCTGGATCGCACCGTTAG
GGATCAACATGGTAgctttgtttttacataaactTGGGAATTCAGGTGAT
CGTAATACTGCTGGTTGGTGCTGGATCAGCGTCTTTGTGGACAACTATGG
CGACGCCAAGCTGTGGATGTTGGTGGATGGTAAAGGAATCGAACTGTTGA
CCTACGTTGTGATCGTCATTTTGTACTCACGGATGAAATTATGGTCCATC
AGACAGATTAAGATACCAAAACAAAATGAAGGTTCGCACTTATTACAACG
TAATTCACTGGATGCTGCAAGATACACGGATAAGAAGATTATATTGATTC
CAATCTTGTTCGTTTTATTGAGGATATGGGGAACGATCAGGTTCTTCATG
TTGTTGAGGACTGAAACATTAGCCTTCAAAGGGGATATCACAGTATTTGA
GACTGCATTGCTCTACTTACAGACAATTGGTGATAATTTACAAGGAGCCA
TCAattgtattttattttgttgCATGACACCGGTTGTCCGAAAACGAATC
AACAAATCAGTCACGAGCATGCGCAGACAGAGATTTCATTTGTATGATCA
TTTGGACAGTACCTCGGATACTTCTTCCAGAATATATCAACCAATTGATT
GAATGGTAAAAGACAGTTATCAGAACATAGCAAACGGTCTAACCAATGAT
GTACTTTTGGCGATATCAGCAGGACTTTCCATCCTAGGATGTACACTAAT
ACTCACCACGTACATGTGCTACAAAGAAATCAGAACTGTGTCCAGACATA
TAGTGGTTTGTATAAGCATCTCAGATATCATCACAACTGCATCCAATTTG
TCAGCAATCTTCATTTCACCAGAAATAGATTCTGAAACAGATGAAATTGA
CAATATATCCTGTACTGTACAAAGCTTTGTAGGAACCTCAGCTGTTTTAT
GGTCTTTTCTATGGACTATGGTACTGGCTATGTATTTGTATCTTGATTTG
GTGAAAGAGAATAAGACTCTTGGGAAACGTTTAATTTGGCCCTGGTCTCA
TTTAATTTGCTGGATCGCACCGTTAGGGATCAACATGGTAgctttgtttt
tacataaactTGGGAATTCAGGTGATCGTAATACTGCTGGTTGGTGCTGG
ATCAGCGTCTTTGTGGACAACTATGGCGACGCCAAGCTGTGGATGTTGGT
GGATGGTAAAGGAATCGAACTGTTGACCTACGTTGTGATCGTCATTTTGT
ACTCACGGATGAAATTATGGTCCATCAGACAGATTAAGATACCAAAACAA
AATGAAGGTTCGCACTTATTACAACGTAATTCACTGGATGCTGCAAGATA
CACGGATAAGAAGATTATATTGATTCCAATCTTGTTCGTTTTATTGAGGA
TATGGGGAACGATCAGGTTCTTCATGTTGTTGAGGACTGAAACATTAGCC
TTCAAAGGGGATATCACAGTATTTGAGACTGCATTGCTCTACTTACAGAC
AATTGGTGATAATTTACAAGGAGCCATCAattgtattttattttgttgCA
TGACACCGGTTGTCCGAAAACGAATCAACAAATCAGTCACGAGCATGCGC
AGACAGAGATTTCATTTGTATGATCATTTGGACAGTACCTCGGATACTTC
TTCCAGAATATATCAACCAATTGATTGAATGGTAAAAGACAGTTATCAGA
ACATAGCAAACGGTCTAACCAATGATGTACTTTTGGCGATATCAGCAGGA
CTTTCCATCCTAGGATGTACACTAATACTCACCACGTACATGTGCTACAA
AGAAATCAGAACTGTGTCCAGACATATAGTGGTTTGTATAAGCATCTCAG
ATATCATCACAACTGCATCCAATTTGTCAGCAATCTTCATTTCACCAGAA
ATAGATTCTGAAACAGATGAAATTGACAATATATCCTGTACTGTACAAAG
CTTTGTAGGAACCTCAGCTGTTTTATGGTCTTTTCTATGGACTATGGTAC
TGGCTATGTATTTGTATCTTGATTTGGTGAAAGAGAATAAGACTCTTGGG
AAACGTTTAATTTGGCCCTGGTCTCATTTAATTTGCTGGATCGCACCGTT
AGGGATCAACATGGTAgctttgtttttacataaactTGGGAATTCAGGTG
ATCGTAATACTGCTGGTTGGTGCTGGATCAGCGTCTTTGTGGACAACTAT
GGCGACGCCAAGCTGTGGATGTTGGTGGATGGTAAAGGAATCGAACTGTT
GACCTACGTTGTGATCGTCATTTTGTACTCACGGATGAAATTATGGTCCA
TCAGACAGATTAAGATACCAAAACAAAATGAAGGTTCGCACTTATTACAA
CGTAATTCACTGGATGCTGCAAGATACACGGATAAGAAGATTATATTGAT
TCCAATCTTGTTCGTTTTATTGAGGATATGGGGAACGATCAGGTTCTTCA
TGTTGTTGAGGACTGAAACATTAGCCTTCAAAGGGGATATCACAGTATTT
GAGACTGCATTGCTCTACTTACAGACAATTGGTGATAATTTACAAGGAGC
CATCAattgtattttattttgttgCATGACACCGGTTGTCCGAAAACGAA
TCAACAAATCAGTCACGAGCATGCGCAGACAGAGATTTCATTTGTATGAT
CATTTGGACAGTACCTCGGATACTTCTTCCAGAATATATCAACCAATTGA
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033069XLOC_033069Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052254-exon-scaffold_213-1491911889:682839..683493TCONS_00052254-exon-scaffold_213-1491911889:682839..683493Clytia hemisphaericaexon
TCONS_00052254-exon-scaffold_213-1510915933:682839..683493TCONS_00052254-exon-scaffold_213-1510915933:682839..683493Clytia hemisphaericaexon
TCONS_00052254-exon-scaffold_213-1575043694:682839..683493TCONS_00052254-exon-scaffold_213-1575043694:682839..683493Clytia hemisphaericaexon
TCONS_00052254-exon-scaffold_213-1491911889:684530..684654TCONS_00052254-exon-scaffold_213-1491911889:684530..684654Clytia hemisphaericaexon
TCONS_00052254-exon-scaffold_213-1510915933:684530..684654TCONS_00052254-exon-scaffold_213-1510915933:684530..684654Clytia hemisphaericaexon
TCONS_00052254-exon-scaffold_213-1575043694:684530..684654TCONS_00052254-exon-scaffold_213-1575043694:684530..684654Clytia hemisphaericaexon
TCONS_00052254-exon-scaffold_213-1491911889:684854..685063TCONS_00052254-exon-scaffold_213-1491911889:684854..685063Clytia hemisphaericaexon
TCONS_00052254-exon-scaffold_213-1510915933:684854..685063TCONS_00052254-exon-scaffold_213-1510915933:684854..685063Clytia hemisphaericaexon
TCONS_00052254-exon-scaffold_213-1575043694:684854..685063TCONS_00052254-exon-scaffold_213-1575043694:684854..685063Clytia hemisphaericaexon
TCONS_00052254-exon-scaffold_213-1491911889:685794..686901TCONS_00052254-exon-scaffold_213-1491911889:685794..686901Clytia hemisphaericaexon
TCONS_00052254-exon-scaffold_213-1510915933:685794..686901TCONS_00052254-exon-scaffold_213-1510915933:685794..686901Clytia hemisphaericaexon
TCONS_00052254-exon-scaffold_213-1575043694:685794..686901TCONS_00052254-exon-scaffold_213-1575043694:685794..686901Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052254-proteinTCONS_00052254-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:682839..686901 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.117896	0.124002	0.170752	0.241417	0	0.0845422	11.633	12.4465	11.1832	7.8031	9.28182	9.17258	7.10788	6.33756	14.8688	18.0892	6.94295	10.3531	14.6638	15.7198	13.0997	11.6225	10.1486	9.3683	8.75382	7.55268	4.96163	3.17849	17.1217	10.6896
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022343GCR1-cAMP_receptor
IPR017981GPCR_2-like
Vocabulary: Molecular Function
TermDefinition
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007166cell surface receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004888 transmembrane signaling receptor activity
Blast
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BLAST of TCONS_00052254 vs. Swiss-Prot (Human)
Match: GP157 (G-protein coupled receptor 157 OS=Homo sapiens GN=GPR157 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 8.418e-27
Identity = 95/297 (31.99%), Postives = 155/297 (52.19%), Query Frame = 1 
Query:  205 ISAGLSILGCTLILTTYMCYKEIRTVSRHIVVCISISDIITTASNLSAI---FISPEIDSETDEIDNISCTVQSFVGTSAVLWSFLWTMVLAMYLYLDLVKENK-TLGKRLIWPWSHLICWIAPLGINMVALFLHKLGNSGDRNTAGWCWISVFVDNYGDAKLWMLVDGKGIELLTYVVIVILYSRMKLWSIRQIKI-----PKQNEGSHLLQRNSLDAARYTDKKIILIPILFVLLRIWGTIRFFMLLRTETLAFKGDITVFETALLYLQTIGDNLQGAINCILFCCMTPVVRKRI 1068
            +S  LS LG  L++ T+  + ++R+ +R +++ +S++D+++ AS    +   F  P  D          C +Q  + T A   SF WT+ +A+YLYL +V+  +     RL+W + H++ W  PL I + A+ L K+G      + GWCWI +      D  LWML+ GK  E+L YV++ +LY  ++    R         P  ++   LL+ +S+      DKK++LIP++F+ LR+W T+RF + L        G   V    L+ L  IG+  QG  NCI+F   T  VR R+
Sbjct:   20 LSCALSALGSGLLVATHALWPDLRSRARRLLLFLSLADLLSAASYFYGVLQNFAGPSWD----------CVLQGALSTFANTSSFFWTVAIALYLYLSIVRAARGPRTDRLLWAF-HVVSWGVPLVITVAAVALKKIGYDASDVSVGWCWIDL---EAKDHVLWMLLTGKLWEMLAYVLLPLLYLLVRKHINRAHTALSEYRPILSQEHRLLRHSSM-----ADKKLVLIPLIFIGLRVWSTVRFVLTL-------CGSPAVQTPVLVVLHGIGNTFQGGANCIMFVLCTRAVRTRL 290
The following BLAST results are available for this feature:
BLAST of TCONS_00052254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GP1578.418e-2731.99G-protein coupled receptor 157 OS=Homo sapiens GN=... [more]
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