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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052289 ID=TCONS_00052289|Name=TCONS_00052289|organism=Clytia hemisphaerica|type=transcript|length=1096bp
CTTGAAAGTGGAGGAGCCAAAGCAATGTACAAAAAATGTCATCATCGGAA
TCACATATTGTGCAGATAGAGAGCCCATCAGGGAAGAATAGCAAATCATT
TGTCTTCCATTGGAGCCATCGAACAGCAAAAGTATCAGATACCCGTGATA
ATTTTGAACCGAAAATCAATGAAACTCCTCTGATAGATAAATCCCCAAAG
GAGACCAAAAGCAAGCCTGATGCAAGCTATCAATCATTAGCCAATAACGC
ATTTGATAATAGAAGATCTGTTTCACTGCTTCCTCCAAATCAGATTGAAA
ATAATACCCAGCAGCCTCCTTGTGATGGATCCACTTCCAAAGATTTTGCA
GCTCAGAACTCGTCTGACTCTCCAGAATCAACGCAGAATCAACTGTTATC
TCCTATGCTGATTCTAGATAACCAAATTTATCAAGATTCGCCTTTAAGCA
AAGACAAGAGCTCGCTAGCGTcttcttcaaaagaaaacagtGAAAATGGA
GGAGCTAGTGAGATATCAACATCTCAAAATAAGACTCTGAGCAAATATAA
AGGTCCCATCTTAAAAATACCATCTTCAGACACAAAACAGGTCACGCCAT
CTCATATGGAAGATAGTCCAGAAATCTCATCTCCTTTGGTAACCAAAAAG
CAACCTCATTCGCCGTCTCGGTTCCGTAGAAATCAACCAAAAAGTAGGAC
ATTTAATGGAAAGCCTACACTATTACGTGCAATATCACATCTATCAAACC
TTGATGCGAGCGATGTCTCTGAGAGTGAGGATGCGGATGGTCCCAGAAAa
acaaaGATTTTAACACCTGGCTCTTTCCGCCGCTTGAAACACATCCATCA
CCATCGCTCACAAACTATTTGTGTCAATCGAACCGCTTCCCGTGACAATC
AGGAAGATGATAGTGGCTCAGGTGAAGGTTTCGCATCACATTTGAGACAT
AGCTTCAGAGATTATTCAATCAAGAATTTTATTAAACGAAAACGAGCGAA
CAGTGATCCAAGCCATCGGTCAAGGtgaatttctcatttttgtacacgtt
ttcttataagaacaaactatataagaacataaggcttcgatggcca Run BLAST on NCBI transcript from alignment at scaffold_213:1134332..1138050+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052289 ID=TCONS_00052289|Name=TCONS_00052289|organism=Clytia hemisphaerica|type=transcript|length=3719bp|location=Sequence derived from alignment at scaffold_213:1134332..1138050+ (Clytia hemisphaerica)
CTTGAAAGTGGAGGAGCCAAAGGTATAGTGACATTGTTTGCGCCTACtgt
cgggtacctaatagccggggatTTTGgaatttggggggggggggggttgg
aataaaaatgtcctgggtggaaagtttttgaaaaggaggccagtacagca
gaattagggcaaaagaggtaaatgtcaaaaataatttcccgaaaattaat
aaatgggtgggagggttggaataagaatgtcctgggtggaaaattttcaa
gaaattaattagcgggggggacgcttattaggtacctgagaaTGTTAAAG
ACCCTTTGTTAATCTTAGACTGCTTTCGCTCAGAAGCGATTTGTGATGAT
AttttaagaataactttttatatgGGAAAATTGAGGGGGCCATCATGCAT
AATCTGATTTGATTTGCATTGATCGGagactttctttaaaaaaggaGAGG
GGGAGGTACTATGAGGAGGTCATTGAATGATAATTATTTTCCAAGGTATA
GAGAACGTGTCATTTATCATGTCCCTTGTTAGCTGGATTTACGGGGTCAC
ATATCTACTTTGAACCAATGGCGCGCATCCTTCAGACATCATCTGTGCTT
TGTCTGTGtttttatacacgttttttatatgaacaaactatataagaaca
tataaggTTTCGATGCCAgaattgttaagaacaagttaagaacattttaa
gtcttTGTTAACTCTAAAAcatcgatttcttaggaaaatggacaaaaaat
gctcaaaaagtggtgaaaataagaacatccgaagaacACTTTTgggctca
aaaagttaagagcatccgaaggcatcaaatttttggatattcttataaaa
aaaggtgtatttcgATAATTTAATCAAATATCTTATCTGTGCGAGTGACA
TTGGAGATATATTTCATGAGCGAATCAAACTTATGATTTGCCTTAAAGAC
ATAGTGTTTCAGGTATTAAAACAGTGCAATGAGTAATGATTGGATAGTGA
GATATTTATCAGTATTCTTCgaaaaaaactagaaaattttttgatcctaa
taaattttcaaagaagagGATCGAGTTCTTGTCCTGTGAAGAAGTTTTTT
CTGTATTTGTCAGTATTTGTAAAGTGCAATTAGACCCAAAATTACAAACT
CGTCTCCAATTTTACTgacaattttattgatttttttccacAACAGTTTt
gttatttcttaaaaaatgcAAATCTTTGGAATTGAAGTTATCAAGAAATG
GAAGTGTCATTTAAGAAGGTGCTTTATCAGCCTCTCTTCCACACCTCACT
GtgataacacccctgtgtcacagacctggtTGGACTCacgccccactgga
aaatctagATAAAATTTCTTCCCGGAAGCAAAATACCCTATAATTTTCAG
CCCtattgggaaattgactttgatttcatctatattgaaaattcaatgaa
aaaaattgctcTATTTTCTATCCCCTACacttcgatagaaatttttattc
acGCTGTAGGAAAAAGTTCCTCTTGGgctctgagacaggggtgttgtgTG
AGTGTATCAataattattcattattttctctCCATATAGCAATGTACAAA
AAATGTCATCATCGGAATCACATATTGTGCAGATAGAGAGCCCATCAGGG
AAGAATAGCAAATCATTTGTCTTCCATTGGAGCCATCGAACAGCAAAAGT
ATCAGATACCCGTGATAATTTTGAACCGAAAATCAATGAAACTCCTCTGA
TAGATAAATCCCCAAAGGAGACCAAAAGCAAGCCTGATGCAAGCTATCAA
TCATTAGCCAATAACGCATTTGATAATAGAAGATCTGTTTCACTGCTTCC
TCCAAATCAGATTGAAAATAATACCCAGCAGCCTCCTTGTGATGGATCCA
CTTCCAAAGATTTTGCAGCTCAGAACTCGTCTGACTCTCCAGAATCAACG
CAGAATCAACTGTTATCTCCTATGCTGATTCTAGATAACCAAATTTATCA
AGATTCGCCTTTAAGCAAAGACAAGAGCTCGCTAGCGTcttcttcaaaag
aaaacagtGAAAATGGAGGAGCTAGTGAGATATCAACATCTCAAAATAAG
ACTCTGAGCAAATATAAAGGTCCCATCTTAAAAATACCATCTTCAGACAC
AAAACAGGTCACGCCATCTCATATGGAAGATAGTCCAGAAATCTCATCTC
CTTTGGTAACCAAAAAGCAACCTCATTCGCCGTCTCGGTTCCGTAGAAAT
CAACCAAAAAGTAGGACATTTAATGGAAAGCCTACACTATTACGTGCAAT
ATCACATCTATCAAACCTTGATGCGAGCGATGTCTCTGAGAGTGAGGATG
CGGATGGTCCCAGAAAaacaaagtaaattttttgACATTGCGCTCAGTGA
GATGATGTAAAAACTTAAAGCGTAGTctagtggtagagcatccggatACG
GTGCACAAGGTtctgggttcaacccccaggtTATACCAAATATTCCAAAA
ATGgaacttgatgcctctctgcttaatactcagcaattaagagaaggatc
caggtggagcaatccagggagaaagagtggcaccctctCCTACCTtgagg
tagatagctatcgaaagaggagccttcgggtcgcctccgactgaggttac
ttacttacttataaaCCTAAATGACAAGAATGAATTACCTGAATGCTAAG
CTGTGCGCCTTCCCTCTGATATGTTTAGATAGGGGAAAATTCAGGCTAAC
CTGTTATTCAGAAATCCAATATATTATTAATCTCTAGCCactcaaatttt
taattcaaacttAATGAAAACTAAAGATCTCACAAGATGACTAGCTTCAA
ATCCTTCAAAAGAGATTCGCTCTTAGCCTTTGGGCTTAAACTCGATTGAA
GCCACCAGCCTACTTATATTATACTTCCCTGTGTTATTTTGGAGATTAAT
TGCAGACATCAGCTCTTCGTCGTGATAAGAATGTTCTCCTGATAATTAGC
AGGTTAATTTGATTACCTTAATCAGGTTATCACTTTATTGATGGTCTGTA
TAGATAAGATTAAAAGTGTACAAAAAGTTCCCAACCGTAAACTTCAATAT
CAGCAATTATTGTTTGAGATTCCCATCACATAGGGAAAGAATGACGTTCT
GGTacagcactgtaagcttacagcgtaatccctGGATTTCGATGGATCTA
ATCCTTTGCATCGGAGTGCCGCACGaagtttaggactattgggaaacAGC
TCAGTTCCGTGTGGTGTTCAAAATAAGCTTAGCTAACactccagtacagc
gctgtaagcttacagcgtaagcccaggcggtggTTCTGGAGGCCATTCTC
TCTATATGTTTTTAAACcagaatttactggttcttataaaaaggacCGCC
TATAATAATATCCGCTTTTTCTCCATAGGATTTTAACACCTGGCTCTTTC
CGCCGCTTGAAACACATCCATCACCATCGCTCACAAACTATTTGTGTCAA
TCGAACCGCTTCCCGTGACAATCAGGAAGATGATAGTGGCTCAGGTGAAG
GTTTCGCATCACATTTGAGACATAGCTTCAGAGATTATTCAATCAAGAAT
TTTATTAAACGAAAACGAGCGAACAGTGATCCAAGCCATCGGTCAAGGtg
aatttctcatttttgtacacgttttcttataagaacaaactatataagaa
cataaggcttcgatggcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052289-exon-scaffold_213-1491911889:1134332..1134353 | TCONS_00052289-exon-scaffold_213-1491911889:1134332..1134353 | Clytia hemisphaerica | exon |
| TCONS_00052289-exon-scaffold_213-1510915933:1134332..1134353 | TCONS_00052289-exon-scaffold_213-1510915933:1134332..1134353 | Clytia hemisphaerica | exon |
| TCONS_00052289-exon-scaffold_213-1575043694:1134332..1134353 | TCONS_00052289-exon-scaffold_213-1575043694:1134332..1134353 | Clytia hemisphaerica | exon |
| TCONS_00052289-exon-scaffold_213-1491911889:1135921..1136703 | TCONS_00052289-exon-scaffold_213-1491911889:1135921..1136703 | Clytia hemisphaerica | exon |
| TCONS_00052289-exon-scaffold_213-1510915933:1135921..1136703 | TCONS_00052289-exon-scaffold_213-1510915933:1135921..1136703 | Clytia hemisphaerica | exon |
| TCONS_00052289-exon-scaffold_213-1575043694:1135921..1136703 | TCONS_00052289-exon-scaffold_213-1575043694:1135921..1136703 | Clytia hemisphaerica | exon |
| TCONS_00052289-exon-scaffold_213-1491911889:1137760..1138050 | TCONS_00052289-exon-scaffold_213-1491911889:1137760..1138050 | Clytia hemisphaerica | exon |
| TCONS_00052289-exon-scaffold_213-1510915933:1137760..1138050 | TCONS_00052289-exon-scaffold_213-1510915933:1137760..1138050 | Clytia hemisphaerica | exon |
| TCONS_00052289-exon-scaffold_213-1575043694:1137760..1138050 | TCONS_00052289-exon-scaffold_213-1575043694:1137760..1138050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:1134332..1138050 + |
Blast
The following BLAST results are available for this feature:
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