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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052364 ID=TCONS_00052364|Name=TCONS_00052364|organism=Clytia hemisphaerica|type=transcript|length=1115bp
GAATTATTTTGCTAATTACCACTGATATAAGGAGATAAAGATCTTTCTTG
TGAGATATTTTATGTGTTGGTTTTATCGTTGCTGCGAAAAATGTCTGAAG
AAACTGATCTGTTTCTATCCCATGATTGGGGTGAAGATGGAAAAACGAAC
CATGATCGAGTGAAAAAAATCAACGAAGCCATCAAAGAGTTGGGTTATAT
CACGTGGTTTGACAATGAGCGAATGGTCGGCAACATGAGAGAACAAATGG
CAAAAGGAATTGATAATACCAAATGTTTTATCGCATTTCTGACGAAGAGA
TATCATGATAAAGTAGTCTTAGGTTCGGATACCGATAATTGTCGAACAGA
GTTCGATTACGCTAGCTCGACGGTTCCCATGGTGGCTGTAGTTCTTGATG
CCTCGATGAGAAACCCTGGAGAGTGGAAAGGAAACATTGGTTTAACACTG
AAGAAGTTTATGTATATTGACATGTCAGGCGATATTGAGACCCCTCTTAC
CTGTCTAAACAACTCAAACTTCTTACAAATAATTTGGATGTCAAGGGTAT
CTTCCCAAATAATCAAGTGCAAAACTCTGGTGCTACCTCGCAGTCGATTT
CCAGTTCAAAGCAAGCCTTGGCaccaaatctaaaaaaaataagttatAAT
TCAAAACCAGCTACGCAGCAACTTACGGCTTCGAGCTTGAATGGTGCCAC
CTGTTCATCTGATTGTGTAATTCAGCCTCAAGATGAACCTTTGATGGAAA
GCACTCATCTTTTGTCGTAAGCTCAAGTAAAATACCTCTAGAGATAATAG
AGGAAGACCTTGGACTTTCCTCGGCTCAGTACTATTTGACCTACCAAGAC
AAGGAGTTAAAATACAAAGATATATTGTTAGAACAAATACTAATTGAATC
GAATTTTCGTTTAGTTTTGCGAAAACGATCTTTTTCAATCTTcgtcaaat
tcaaaatgaaagcCATCACTTTGGAAGTCGAACCAAATGATACTATCGAC
AACgtcaaagccaaaattcaaGATAAAGAAGGAATCCCACCAGATCAACA
ACGTTTGATCTTCGCTGGCAAAGAATTAGAGGATGGCCGAACCCTTTCCG
ACTACAACATCCAAA Run BLAST on NCBI protein sequence of TCONS_00052364-protein >TCONS_00052364-protein ID=TCONS_00052364-protein|Name=TCONS_00052364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MSEETDLFLSHDWGEDGKTNHDRVKKINEAIKELGYITWFDNERMVGNMR
EQMAKGIDNTKCFIAFLTKRYHDKVVLGSDTDNCRTEFDYASSTVPMVAV
VLDASMRNPGEWKGNIGLTLKKFMYIDMSGDIETPLTCLNNSNFLQIIWM
SRVSSQIIKCKTLVLPRSRFPVQSKPWHQI Run BLAST on NCBI transcript from alignment at scaffold_213:712238..714203- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052364 ID=TCONS_00052364|Name=TCONS_00052364|organism=Clytia hemisphaerica|type=transcript|length=1966bp|location=Sequence derived from alignment at scaffold_213:712238..714203- (Clytia hemisphaerica)
GAATTATTTTGCTAATTACCACTGATATAAGGAGATAAAGATCTTTCTTG
TGAGATATTTTATGTGTTGGTTTTATCGTTGCTGCGAAAAATGTCTGAAG
AAACTGATCTGTTTCTATCCCATGATTGGGGTGAAGATGGAAAAACGAAC
CATGATCGAGTGAAAAAAATCAACGAAGCCATCAAAGAGTTGGGTTATAT
CACGTGGTTTGACAATGAGCGAATGGTCGGCAACATGAGAGAACAAATGG
CAAAAGGAATTGATAATACCAAATGTTTTATCGCATTTCTGACGAAGAGA
TATCATGATAAAGTAGTCTTAGGTTCGGATACCGATAATTGTCGAACAGA
GTTCGATTACGCTAGCTCGACGGTTCCCATGGTGGCTGTAGTTCTTGATG
CCTCGATGAGAAACCCTGGAGAGTGGAAAGGAAACATTGGTTTAACACTG
AAGAAGTTTATGTATATTGACATGTCAGGCGATATTGAGACCCCTCTTAC
CTGTCTAAACAACTCAAACTTCTTACAAATAATTTGGATGTCAAGGGTAT
CTTCCCAAATAATCAAGGTATGTGTTTTTGTACGACAATATTATTTGCTT
TGCTATTTTGTTACAATGGTCTCTTTGAGTTTTACGATTGACTTTCAAGC
GGGGCGTGGAATTTCCGAGTTATTCTTTTCTGAGTTATTTTGCGCATGAC
GTCATAATTTTATTTTTGTGACGTCATTATGACGTAATCTCAAGAATCAT
AACTTTTTTCGAGCTTTTAACTTTTCGAATTATTTGGTGTTATTTAAGTA
ATAAGGTTTTTTTCGTGCCTTTAACTTGACGCCATTTATTAACTCGCAAA
TTAACTCGGGAATTCCAGGCCCCCTTTCAAGCTTTATGTGAACTTCGTCG
GCTATATTTATATTGTTTGATATCATATACTCCTTTTTTTTCTTTAACAG
TGCAAAACTCTGGTGCTACCTCGCAGTCGATTTCCAGTTCAAAGCAAGCC
TTGGCACCAAATCTAAAAAAAATAAGTTATAATTCAAAACCAGCTACGCA
GCAACTTACGGCTTCGAGCTTGAATGGTGCCACCTGTTCATCTGATTGTG
TAATTCAGCCTCAAGATGAACCTTTGATGGAAAGCACTCATCTTTTGTCG
TAAGCTCAAGTAAAATACCTCTAGAGATAATAGAGGAAGACCTTGGACTT
TCCTCGGCTCAGTACTATTTGACCTACCAAGACAAGGAGTTAAAATACAA
AGATATATTGTTAGAACAAATACTAATTGAATCGAATTTTCGTTTAGTTT
TGCGAAAACGATCTTTTTCAATCTTCGTCAAATTCAAAATGAAAGCCATC
ACTTTGGAAGTCGAACCAAATGATACTATCGACAACGTCAAAGCCAAAAT
TCAAGATAAAGAAGGAATCCCACCAGATCAACAACGTTTGATCTTCGCTG
GCAAAGAATTAGAGGATGGCCGAACCCTTTCCGACTACAACATCCAAAAG
GAATCCACCCTTAACTTGGTCTTGCCTTCCGTTCCCATTCGGTCACTGAC
AATCTTTGTCAAAACTTTATCTGGTAAAACCATTACTTTAAAAGTCGAAC
CAAATGATACTATCAACAACTTCAAAGCCAAAATTCAAGATAAAGAAGGA
ATCCCTCCAGATCAACAACGTTTGATCTTCTCTGGCAGAAAATTAGAGGA
TGGCCGAACCCTTTCCGACTACAACATCCAAAAAGAATCAACCCTTCACT
TGGTCTTACCTTCCGTTCGCATTTGGTCAATGACAATCTTTGTCAAAACC
TTATCTGGTAAAACCATTACTTTAGAAGTCGAACCAAATGATACTATCGA
CAACGTCAAAGCCAAAATTCAAAATAAAGAAGGAATCCCTCCAGATCAAC
AACGTTTGATCTTCTCTGGCAGAAAATTAGAGGATGGCCGAACCCTTTCC
GACTACAACATCCAAA Coding sequence (CDS) from alignment at scaffold_213:712238..714203- >TCONS_00052364 ID=TCONS_00052364|Name=TCONS_00052364|organism=Clytia hemisphaerica|type=CDS|length=1086bp|location=Sequence derived from alignment at scaffold_213:712238..714203- (Clytia hemisphaerica)
TGCAAAACTCTGGTGCTACCTCGCAGTCGATTTCCAGTTCAAAGCAAGCC
TTGGCACCAAATCTAAATGTCTGAAGAAACTGATCTGTTTCTATCCCATG
ATTGGGGTGAAGATGGAAAAACGAACCATGATCGAGTGAAAAAAATCAAC
GAAGCCATCAAAGAGTTGGGTTATATCACGTGGTTTGACAATGAGCGAAT
GGTCGGCAACATGAGAGAACAAATGGCAAAAGGAATTGATAATACCAAAT
GTTTTATCGCATTTCTGACGAAGAGATATCATGATAAAGTAGTCTTAGGT
TCGGATACCGATAATTGTCGAACAGAGTTCGATTACGCTAGCTCGACGGT
TCCCATGGTGGCTGTAGTTCTTGATGCCTCGATGAGAAACCCTGGAGAGT
GGAAAGGAAACATTGGTTTAACACTGAAGAAGTTTATGTATATTGACATG
TCAGGCGATATTGAGACCCCTCTTACCTGTCTAAACAACTCAAACTTCTT
ACAAATAATTTGGATGTCAAGGGTATCTTCCCAAATAATCAAGTGCAAAA
CTCTGGTGCTACCTCGCAGTCGATTTCCAGTTCAAAGCAAGCCTTGGCAC
CAAATCTAAATGTCTGAAGAAACTGATCTGTTTCTATCCCATGATTGGGG
TGAAGATGGAAAAACGAACCATGATCGAGTGAAAAAAATCAACGAAGCCA
TCAAAGAGTTGGGTTATATCACGTGGTTTGACAATGAGCGAATGGTCGGC
AACATGAGAGAACAAATGGCAAAAGGAATTGATAATACCAAATGTTTTAT
CGCATTTCTGACGAAGAGATATCATGATAAAGTAGTCTTAGGTTCGGATA
CCGATAATTGTCGAACAGAGTTCGATTACGCTAGCTCGACGGTTCCCATG
GTGGCTGTAGTTCTTGATGCCTCGATGAGAAACCCTGGAGAGTGGAAAGG
AAACATTGGTTTAACACTGAAGAAGTTTATGTATATTGACATGTCAGGCG
ATATTGAGACCCCTCTTACCTGTCTAAACAACTCAAACTTCTTACAAATA
ATTTGGATGTCAAGGGTATCTTCCCAAATAATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052364-exon-scaffold_213-1575043694:713637..714203 | TCONS_00052364-exon-scaffold_213-1575043694:713637..714203 | Clytia hemisphaerica | exon |
| TCONS_00052364-exon-scaffold_213-1575043694:712713..713253 | TCONS_00052364-exon-scaffold_213-1575043694:712713..713253 | Clytia hemisphaerica | exon |
| TCONS_00052364-exon-scaffold_213-1575043694:712238..712244 | TCONS_00052364-exon-scaffold_213-1575043694:712238..712244 | Clytia hemisphaerica | exon |
| TCONS_00052364-exon-scaffold_213-1510915933:713637..714203 | TCONS_00052364-exon-scaffold_213-1510915933:713637..714203 | Clytia hemisphaerica | exon |
| TCONS_00052364-exon-scaffold_213-1510915933:712713..713253 | TCONS_00052364-exon-scaffold_213-1510915933:712713..713253 | Clytia hemisphaerica | exon |
| TCONS_00052364-exon-scaffold_213-1510915933:712238..712244 | TCONS_00052364-exon-scaffold_213-1510915933:712238..712244 | Clytia hemisphaerica | exon |
| TCONS_00052364-exon-scaffold_213-1491911889:713637..714203 | TCONS_00052364-exon-scaffold_213-1491911889:713637..714203 | Clytia hemisphaerica | exon |
| TCONS_00052364-exon-scaffold_213-1491911889:712713..713253 | TCONS_00052364-exon-scaffold_213-1491911889:712713..713253 | Clytia hemisphaerica | exon |
| TCONS_00052364-exon-scaffold_213-1491911889:712238..712244 | TCONS_00052364-exon-scaffold_213-1491911889:712238..712244 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:712238..714203 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000157 | TIR_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00052364 vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.556e-29 Identity = 67/109 (61.47%), Postives = 77/109 (70.64%), Query Frame = 2
Query: 797 IEEDLGLSSAQYYLTYQDKELKYKDILLE-QILIESNFRLVLRKRS-FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQ 1114
I++ G+ Q L + K+L+ L + I ES LVLR R IFVK K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQ
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 138 HSP 2 Score: 115.161 bits (287), Expect = 1.556e-29 Identity = 67/109 (61.47%), Postives = 77/109 (70.64%), Query Frame = 2
Query: 797 IEEDLGLSSAQYYLTYQDKELKYKDILLE-QILIESNFRLVLRKRS-FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQ 1114
I++ G+ Q L + K+L+ L + I ES LVLR R IFVK K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQ
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 214 HSP 3 Score: 105.531 bits (262), Expect = 3.869e-26 Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 2
Query: 932 FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQ 1114
IFVK K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQ
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
The following BLAST results are available for this feature:
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