TCONS_00052375 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052375
Unique NameTCONS_00052375
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052375 ID=TCONS_00052375|Name=TCONS_00052375|organism=Clytia hemisphaerica|type=transcript|length=1328bp
tttagcttaaaaaggAAATGAAAACACATAAGGTAGCATatatgaaagat
tatttttaaaattatgcTAAATTCGAATAAAACAATCAAGGACAATGGAA
TCATATTTGGGAGATCATAAAGTAGCAATTGATTTCATCAAGTCATGTGG
TagccatctttgtttatctgCGTCACCCATAGCAACGGGTTGTGTTTTGT
ATCATCGCATCGTGCGCAAGCAGCTGGAATTGAAAGAACGGGATGTGGAC
ATTGAAAAATATCTATTAGCGACAACCTGTTTGTATTTGGGAGCAAAAAT
CGAAGAAGAACCCCAAAAAATTCGTGATGTCATCAACGTTGCACACAgat
tactCCATCAAGACGAGAAAGCTTTGGAGATTGGAGACGATTATTGGAAA
CTCCATGACAGCGTGACAGCTTGTGAACTGATAGTTTTGagatatttgaa
atttcaagtaACTTTCGATTCACCAATCAAGTACATTTTAATGTTTTGTA
AATCCTTGGAGGATTGGTTACCAGATTCGAACATTCTCCACCAATCAAAA
CTTCCACAGATTTGTTGGAACATGGTGAACGACTTATGTTACTTACCGCT
AGTTATCTTCTACCCTGCAGAAGTAGTAGCCGCAAGTATTGTATACATCG
CACTGGAAGTAACACATTTGGAAATCCCCGAACATAAAGAAGGCAAACGA
TGGTTTCAGGTCCTGTGTCCAGGGATTAAGGAGAACAAATTAAAAGACAT
TGGATGTAAGATATTGACCTTGTATGATCATATCAAAGTGAAGTAAATCA
GTTGTTTTGATGTTATTGGGCGTCGTGCTTGGATCAAGAGACATTCTGGT
TACTCATTACATAGGTTTATACGGGGTTAACCTCCTTTCCACGCCATGTT
TTGACCTGGGAAAGTAGATATTTGAAAGGTTTTTAAAAAGCTGTTGGGCA
AAAGCTATTTATTTTGTTATGAGCCTGCCCAGCTATTACATGAAACACTG
TTATGAATATCATCTAAGAGCCAATGTATGATTAGATCAACGTTGCTTGG
AAGTTTTCCTCGCTGGAGAAAGTTTCATGGAGTCAAACATAAGACATGAT
AATGATGATGAAGGAACAAAGACGAAGTATGATTAAATTTAGATGGTTAT
TTTCTGTCCTCCACGTGAGAGCTCTAAAGGAAGGGTATGGGACTAACCAA
GTTGTATATTTATGCATATTTAGACGAAAGAGTTCGATAGTAATTACCGC
ATTCAGCTAACCGAGATATGTTCTATTTACACAGAATACTACATTATTCA
GATGCAGATGAGACgtgctaaagctctg
Run BLAST on NCBI

protein sequence of TCONS_00052375-protein

>TCONS_00052375-protein ID=TCONS_00052375-protein|Name=TCONS_00052375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MESYLGDHKVAIDFIKSCGSHLCLSASPIATGCVLYHRIVRKQLELKERD
VDIEKYLLATTCLYLGAKIEEEPQKIRDVINVAHRLLHQDEKALEIGDDY
WKLHDSVTACELIVLRYLKFQVTFDSPIKYILMFCKSLEDWLPDSNILHQ
SKLPQICWNMVNDLCYLPLVIFYPAEVVAASIVYIALEVTHLEIPEHKEG
KRWFQVLCPGIKENKLKDIGCKILTLYDHIKVK
Run BLAST on NCBI

transcript from alignment at scaffold_213:976291..989675-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052375 ID=TCONS_00052375|Name=TCONS_00052375|organism=Clytia hemisphaerica|type=transcript|length=13385bp|location=Sequence derived from alignment at scaffold_213:976291..989675- (Clytia hemisphaerica)
TTTAGCTTAAAAAGGAAATGAAAACACATAAGGTAGCATATATGAAAGAT TATTTTTAAAATTATGCTAAATTCGAATAAAACAATCAAGGACAATGGAA TCATATTTGGGAGATCATAAAGTAGCAATTGATTTCATCAAGTCATGTGG TAGCCATCTTTGTTTATCTGCGTCACCCATAGCAACGGGTTGTGTTTTGT ATCATCGCATCGTGCGCAAGCAGCTGGAATTGAAAGAACGGGATGTGGAC ATTGAAAAATATGTAAGTAGTTGGTTATTTTCTTCTGTTTGTTTAACATT CTTTCGCTTTAAATCTTTATTGATAAACTTATTTTGTTAAAAACTCCCAT CGCGTTTCATCCTATTAATAGGTGAATTCCCGGTAGGGGTCACCAGTGGC TGCCCGTAGCAGTGCCTATAGACCAAGAGTAAGGGAGCTGTCTATTGTGT AGACTAGAAATTCATTGTTTTTTGTTGGGTCATCAAAGAACTACAGTACT TGAGGTTTCCAAAGAGGGTTTTAGCCCAGACCAGATTCACTCACCACTAT GTTTAAAGAAGGTACTATTTTGTCTTTTAGCTATTAGCGACAACCTGTTT GTATTTGGGAGCAAAAATCGAAGAAGAACCCCAAAAAATTCGTGATGTCA TCAACGTTGCACACAGGTTTTTATTTACTTAAAATTAAATTATGCCTTTG GTAAATGAGTAAAACATTATTGATCGATAACATTATTTATACCTACAGGT TTAAATTTCGCTAATTAAGATTTTAGAACTTTGAAAACCGTTTAGACCTA CCTGGAGGTCCTGTAAATTAACCTTTGTCCTTTCGTCCGTTCGTCGGTCC GTCTGTTACCAGCTTTTCTCGAGATTGGCTCATTAGTTTTTTTCTGATTC TTGGCACAATGGGCTTTTCCAGAAAAAAACCGTATACCCCCTGTTGAGGA GGTCCATCATTTTGTGGCTGGAAATGCTGTTACCCCCTGGAATTCCAGGA AATTTCAGGTTTCAACCCCTCTGGAATTCTGAATTTTAGTAGGATTTAAA AGGCTACCCCCATGGAATTCCAGTTATTTTTGACAGATTTTTGTATCTCC CTATGAAATTCCGCCACATATCAAACCTTACCACCTTGGAACGGAAATGG ACCTCCTCAACAGGGGGTATACGGTTTTTTTCTGGAAAAGCCCAATGAGT GTAAAATAGTAATGGCCAAAATGTGATGGAGCCCGATTTTCAAGAAAAAA CTTTAAATTTTCGTCCCCTAAGGTACCGTTTTAACATATTTTTTTAATCG AAACAAAGACACGTGTACACTACGAAATATATTACAATACATTACTTAAA CATAAATATAGCCACTCCCTCCGCTAGGAACTAATGTTATGTCGACAGAG GTACTAGACTATGTAAAATAAATATATAAGAAACAAAAACAAAGATCTTG GAGAAGGAGGCTAAAATTGTTAGGTAAAAACCTAAAATAAAACACTGCTG AACCTTCCATTGTCTCGTTAAGAAATTCGACAACAGAACGAAGAATGGAT TTATTTAGATTTGAGGTCAAACTTTCCTCCCCATATAATAAAAGCCGACA GAAAAAAGAAGGGTTGAGTGGATGAAAAACAATGCCTAGGGTCTGAATTT TGTCGAACAAAGGTTGTTTTGCATGGGAATATATGCAGTGCAGAAAAAAG CGAGTTTTCAACAGAGTTAGTTCGGCAAACAAAGAAAGGGTCTAAAGTGT CGCGAAAGCCATGCCTAAATTTATGCTCGTTGAGATGGCTGAAACCAACC CGAAGTCGATTAAGAAAGATCACTCCTTGAATGTCAGGAACATCAAAAAC ACGATATTGCTTTTGGCCTTCGTATCTTCTCATCTAGATGGCGATCAAAA GAAAGTTTTGAGTCTAAGATTGATTAGACCAAGATGTTTCTTGCATCACT GTACGCGATAATAAAGATTAGAGTCATTAAAGGAAATTACTGGAGCATTA GCAGGAGTGAGTCTACAGGTAAAATAGACTTCAACAGCTTGCTTAGACAT TTTTGTACATTTTTTAGACATTTATATTTTTTTTCAGATTACTCCATCAA GACGAGAAAGCTTTGGAGATTGGAGACGATTATTGGAAACTCCATGACAG CGTGACAGCTTGTGAACTGATAGTTTTGAGATATTTGAAATTTCAAGTAA CTTTCGATTCACCAATCAAGGTATAGTTCATTCGTATTTTGATTTTAGAC AACAAGTTACCTTATCTTTTATTAACTAAACCAACCTAGTATGGGGACCT GTACTTTCGTAAGAAACCCTTTTTGGACTTACCTCGGAGGTCCTTTAAAT TAACCCATGTCCGTCCGTCTGTTACCAGCTTTTCTCGGGATCGGCTCATT ACTTTTTTCCGTTTTTTGACACAATGATACAAAATGATAATTCCTAAAAA GTGACAGAGCCCGATTTTCGAAAAAAAAAAAATTCCGGCCAAAAATGCCG ATAATATGCCGGAAAAACTGTTTTTTTGGCATTTTCTCGAGATTTTATCA TTAGTTTTTTCTGATTTTTTGCTCAAAGATGCGTGTTAACAATGCCCAAA GCATGGCTGTGTCCGATTTTTGAGAAAAAATTTTTCCGGCCGAAAATGCT GGAAATATACCAGAAATCACCGTTTTGCAGATTTTCATTAGACTTTTACT TAATAATTCTTTGTTTTTTTTCAAACTAAAACAACATTGATAACAATGCC CCCCGGGGGGGGGGCAGCTGGGCAAAATGACCGACGGGTATGTGCGGGCC CTAAGGGTACCTTTTCCAAGATGTTTAAAATGCACTGTAAGGGTCGGAAA ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNACGAAAAGGATTGAAAATTTGGGGGAAAATGCACTCTAAGGGTATGA TTTTCATCGAATTTTGCTGCACTGTAAGGGTGCAATTTTAAAAGCCAATT TTCAGCCCGCACATACCGTCAGTCCGCAAAGCCAGTGCCCCCCCGGGCAA TGCCCACCATCAAGCATGATTCAATTGTCAATAAAACTGATTTTTGCAAC CGGAACTCTTTCTATTTCTTTTTTCCCTACTCCCCTTCCCTCTCCCCCCA TCAGCAATCAATGATGAAATTTCTTGCGTTATGCATTTTCGCGAAACGCT ATGTTTTCTTCATTTTTCTCTTTATTGCTATCCAATTTTCATCATCAGGT AGGTCCATTCAGCATTTGGCTTGTTTGTTATAAAATTGTAAATCGGAACG TGTCAATAATTACATAGTAAATCAGACACGTGTTTCGTCCTTCACAAGAC TTACCTGTGCGGCTTTTTTATGAACCAGTGGCATTGCAGGGGAGAGAGTG GTGGAAACCTTTTGTTCACTATAGGGAAAAAAATTGGAAATTTTCCTTTT AGTTTGCCTCGATTTTGGTCAGCCTACCACCATCTATTAAGAACGTATAC AGAAAAAGTGTTTCCGTTAATTCGTTTTTCAGTGTGAATTAGTACTAAGT TTTAAATCTTTTTTTCATCCATTCAGTACATTTTAATGTTTTGTAAATCC TTGGAGGATTGGTTACCAGATTCGAACATTCTCCACCAATCAAAACTTCC ACAGATTTGTTGGAACATGGTGAACGACTTATGTTACTTACCGCTAGTTA TCTTCTACCCTGCAGAAGTAGTAGCCGCAAGTATTGTATACATCGCACTG GAAGTAACACATTTGGAAATCCCCGAACATAAAGAAGGCAAACGATGGTT TCAGGTTTGTCAAAAGGCTTTCAAAATTGTTCAATAAAGTCTCAATATAA TCTACTAATCCTAAAAGCTCTAAATTTTCATTGAATTTGTCAAAAGGCTA TCAAAATTGTTCAATAAAGTCTCAATATAATCTACTAATCCTAAAAGCTC TAAATTTTCATTGAATTTGTCAAAAGGCTATCAAAATTGTTCAATAAAGT CTCAATATAATCTACTAATCCTAAAAGCTCTAAATTTTCATTGAATTTGT CAAAAGGCTATCAAAATTGTTCAATAAAGTCTCTATATAATGTACAGCGG AGACAAAAAGCTCTAAATTTTCATTGAATTTGAGCAGATTTGCGCTGGTT GAAAAGATATTCAAAAGTGCAATATTACCAAATGAGAAAATCAAAAAAAT CTGGAAAATCAAAATCAAAATAAAGAAAAAGAAAAAAAATCAACTTCGTG AAGTTATTTCTTAAGACGATTTTTTTCTAGCGTTGTGTTATTTCCATACT TTACAAACGCAAGTCCTACCCGCAGACGAGGTTCAAAACGTCTGAACTAT ATTTCTTAAATCAATTAATTACGTGATTATTTATGATGTAATACTCGATT TCTTTGGTGTAGCAAGTTAAAATTTGTCTCGATGGTTGATTAACTTTTTA GAATTGTTTTTTGGCCTGAGATACATAACTTCTCTTCCTATACCTTTATT TTTCAGGTCCTGTGTCCAGGGATTAAGGAGAACAAATTAAAAGACATTGG ATGTAAGATATTGACCTTGTATGATCATATCAAAGTGAAGTAAATCAGTT GTTTTGATGTTATTGGGCGTCGTGCTTGGATCAAGAGACATTCTGGTTAC TCATTACATAGGTTTATACGGGGTTAACCTCCTTTCCACGCCATGTTTTG ACCTGGGAAAGTAGATATTTGAAAGGTTTTTAAAAAGCTGTTGGGCAAAA GCTATTTATTTTGTTATGAGCCTGCCCAGCTATTACATGAAACACTGTTA TGAATATCATCTAAGAGCCAATGTATGATTAGATCAACGTTGCTTGGAAG TTTTCCTCGCTGGAGAAAGTTTCATGGAGTCAAACATAAGACATGATAAT GATGATGAAGGAACAAAGACGAAGTATGATTAAATTTAGATGGTTATTTT CTGTCCTCCACGTGAGAGCTCTAAAGGAAGGGTATGGGACTAACCAAGTT GTATATTTATGCATATTTAGACGAAAGAGTTCGATAGTAATTACCGCATT CAGCTAACCGAGATATGTTCTATTTACACAGAATACTACATTATTCAGGT AGTATGTTCGTTTTTCAAATGTATCCAACGTTCATTTTTAACATCCTTTT AACGTTAATATAATGCTCGCGACGGCGGACAATGTTGTGTTCTAGATTGG AGGTTCATTGGGAGGTTTGTACATGTTCCTACCCCCGGAAATTAGTCACA GGAAAATTCACAAAATTTAGGAATTTTTTTTTATTTAGAGTGAAAAAATT GTAAAAAAGTCTCTCTAAGGGTAGGGAATTTTTCAAAAAAGACTCTCTAA GTCACCTTTTCAGCAATATTTCTTAAATCAATTAATTACGTGATTATTTA TGATGTAATACTCGATTTCTTTTCTTTTCAACTCTCTTTAAGAGTTGTTT TATGGAGGTCCCATCCGCACTGCCAGCCCTGTGAATCCAGGTCGGCATTC GGCAATGCCGACCTGAAAGCCGACGTAACTTGAGCTGAAGTCGGCTTTTA TTTGCCGACGTAATTTACACTCTAGNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NCGGCAAAGCCGACCTAAAGAGGAAAAATATTATTTGTTAGGTTAATCTA ATTGTGTTATCATTTGATAACACATGATAATCGAGCCTCATTCCATTCTC TTTGTAAAACATAAAACTTATTAACACAATTATTAATGATAGTTAAACTA ACTGTAGGAAATTTATTGTCTTTGCCGACCTAAACAAGCTACTTAGGACG GCTTTGCCGACCTAAAATAACCTCTAGGTCGGCAAAATTTTGCCGGCCTA CGGCCGGTTTTGTTCGGCACTTACATGCCGATATGATTTTTTCTGAATTC ACAGGGCTGCGCACACATAACCCTAGACGATCCTATCGTCTACACAAGAT CACTAAATAGTTTAGGAGAGGCGTGATAAATTCGGGTGGAGTAAGCAGTG GCGGAGATGTTTACAGTGTAGACGATACCAATTTGGCGCAAAAGCAAAAA AACTGAAATAAGCCGTGGATTTGCCTTTGCGTATTATTGATGATTCGGTT CGGTCATTTTCAAAACATTCGAAAACGCACAGCATCAACTTTTACTTTTC TACACTGGCTGAAGGATTTTTTTGCATGAAATTCTTTTCTTTATGGGTTT ATTTTGTAGCTCAAATTGAGAATGTTAGTTTGCAATTTGTTTGCAACAAG TATTTAAATTTTAAGAGCCATGCTTCATATGTTTAACATACTTTTTGACT TCAGAAACACAAAGACTAACAGGTTTGTTGTTAATATTTTTTTACTTCCA ACCTTCTACAGTAATTTAACTCAAAGACACCACACTTGCTGTACATTTAG TATCATTTTACACATTTCCCTTCTGATAAAAACAGCTTTTTACCTTCTTT TCAATACTCCCTATTTTTGTTTTGTTAGAAATTCTACAAGTTACTTATTT TTAACTTTTATATTTTTTATATTTGACATGTTCAGTAGTATAGAAGTATA ATTATAGCCACAGGAAATCATTTTGAAATTTTTAATTTTTGTTTGTCTAG AAGATGGTATCAATTTGAAGGTAGACTATGTGCTTCTGGCAGCTAGAGAA GAGTTTTATTCTGATACAAAAAATCATTACAGGATAGTTTGACAATTGAN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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TCGTACCCCCTGGCTCCTACCACAGCTAATAATTGATATTACTTTATCTG TCACCCAGATGCAGATGAGACGTGCTAAAGCTCTG

Coding sequence (CDS) from alignment at scaffold_213:976291..989675-

>TCONS_00052375 ID=TCONS_00052375|Name=TCONS_00052375|organism=Clytia hemisphaerica|type=CDS|length=3510bp|location=Sequence derived from alignment at scaffold_213:976291..989675- (Clytia hemisphaerica)
GTCCTGTGTCCAGGGATTAAGGAGAACAAATTAAAAGACATTGGATGTAA
GATATTGACCTTGTATGATCATATCAAAGTGAAGTAATACATTTTAATGT
TTTGTAAATCCTTGGAGGATTGGTTACCAGATTCGAACATTCTCCACCAA
TCAAAACTTCCACAGATTTGTTGGAACATGGTGAACGACTTATGTTACTT
ACCGCTAGTTATCTTCTACCCTGCAGAAGTAGTAGCCGCAAGTATTGTAT
ACATCGCACTGGAAGTAACACATTTGGAAATCCCCGAACATAAAGAAGGC
AAACGATGGTTTCAGATTACTCCATCAAGACGAGAAAGCTTTGGAGATTG
GAGACGATTATTGGAAACTCCATGACAGCGTGACAGCTTGTGAACTGATA
GTTTTGAGATATTTGAAATTTCAAGTAACTTTCGATTCACCAATCAAGCT
ATTAGCGACAACCTGTTTGTATTTGGGAGCAAAAATCGAAGAAGAACCCC
AAAAAATTCGTGATGTCATCAACGTTGCACACAGATGGAATCATATTTGG
GAGATCATAAAGTAGCAATTGATTTCATCAAGTCATGTGGTAGCCATCTT
TGTTTATCTGCGTCACCCATAGCAACGGGTTGTGTTTTGTATCATCGCAT
CGTGCGCAAGCAGCTGGAATTGAAAGAACGGGATGTGGACATTGAAAAAT
ATGTCCTGTGTCCAGGGATTAAGGAGAACAAATTAAAAGACATTGGATGT
AAGATATTGACCTTGTATGATCATATCAAAGTGAAGTAATACATTTTAAT
GTTTTGTAAATCCTTGGAGGATTGGTTACCAGATTCGAACATTCTCCACC
AATCAAAACTTCCACAGATTTGTTGGAACATGGTGAACGACTTATGTTAC
TTACCGCTAGTTATCTTCTACCCTGCAGAAGTAGTAGCCGCAAGTATTGT
ATACATCGCACTGGAAGTAACACATTTGGAAATCCCCGAACATAAAGAAG
GCAAACGATGGTTTCAGATTACTCCATCAAGACGAGAAAGCTTTGGAGAT
TGGAGACGATTATTGGAAACTCCATGACAGCGTGACAGCTTGTGAACTGA
TAGTTTTGAGATATTTGAAATTTCAAGTAACTTTCGATTCACCAATCAAG
CTATTAGCGACAACCTGTTTGTATTTGGGAGCAAAAATCGAAGAAGAACC
CCAAAAAATTCGTGATGTCATCAACGTTGCACACAGATGGAATCATATTT
GGGAGATCATAAAGTAGCAATTGATTTCATCAAGTCATGTGGTAGCCATC
TTTGTTTATCTGCGTCACCCATAGCAACGGGTTGTGTTTTGTATCATCGC
ATCGTGCGCAAGCAGCTGGAATTGAAAGAACGGGATGTGGACATTGAAAA
ATATGTCCTGTGTCCAGGGATTAAGGAGAACAAATTAAAAGACATTGGAT
GTAAGATATTGACCTTGTATGATCATATCAAAGTGAAGTAATACATTTTA
ATGTTTTGTAAATCCTTGGAGGATTGGTTACCAGATTCGAACATTCTCCA
CCAATCAAAACTTCCACAGATTTGTTGGAACATGGTGAACGACTTATGTT
ACTTACCGCTAGTTATCTTCTACCCTGCAGAAGTAGTAGCCGCAAGTATT
GTATACATCGCACTGGAAGTAACACATTTGGAAATCCCCGAACATAAAGA
AGGCAAACGATGGTTTCAGATTACTCCATCAAGACGAGAAAGCTTTGGAG
ATTGGAGACGATTATTGGAAACTCCATGACAGCGTGACAGCTTGTGAACT
GATAGTTTTGAGATATTTGAAATTTCAAGTAACTTTCGATTCACCAATCA
AGCTATTAGCGACAACCTGTTTGTATTTGGGAGCAAAAATCGAAGAAGAA
CCCCAAAAAATTCGTGATGTCATCAACGTTGCACACAGATGGAATCATAT
TTGGGAGATCATAAAGTAGCAATTGATTTCATCAAGTCATGTGGTAGCCA
TCTTTGTTTATCTGCGTCACCCATAGCAACGGGTTGTGTTTTGTATCATC
GCATCGTGCGCAAGCAGCTGGAATTGAAAGAACGGGATGTGGACATTGAA
AAATATGTCCTGTGTCCAGGGATTAAGGAGAACAAATTAAAAGACATTGG
ATGTAAGATATTGACCTTGTATGATCATATCAAAGTGAAGTAATACATTT
TAATGTTTTGTAAATCCTTGGAGGATTGGTTACCAGATTCGAACATTCTC
CACCAATCAAAACTTCCACAGATTTGTTGGAACATGGTGAACGACTTATG
TTACTTACCGCTAGTTATCTTCTACCCTGCAGAAGTAGTAGCCGCAAGTA
TTGTATACATCGCACTGGAAGTAACACATTTGGAAATCCCCGAACATAAA
GAAGGCAAACGATGGTTTCAGATTACTCCATCAAGACGAGAAAGCTTTGG
AGATTGGAGACGATTATTGGAAACTCCATGACAGCGTGACAGCTTGTGAA
CTGATAGTTTTGAGATATTTGAAATTTCAAGTAACTTTCGATTCACCAAT
CAAGCTATTAGCGACAACCTGTTTGTATTTGGGAGCAAAAATCGAAGAAG
AACCCCAAAAAATTCGTGATGTCATCAACGTTGCACACAGATGGAATCAT
ATTTGGGAGATCATAAAGTAGCAATTGATTTCATCAAGTCATGTGGTAGC
CATCTTTGTTTATCTGCGTCACCCATAGCAACGGGTTGTGTTTTGTATCA
TCGCATCGTGCGCAAGCAGCTGGAATTGAAAGAACGGGATGTGGACATTG
AAAAATATGTCCTGTGTCCAGGGATTAAGGAGAACAAATTAAAAGACATT
GGATGTAAGATATTGACCTTGTATGATCATATCAAAGTGAAGTAATACAT
TTTAATGTTTTGTAAATCCTTGGAGGATTGGTTACCAGATTCGAACATTC
TCCACCAATCAAAACTTCCACAGATTTGTTGGAACATGGTGAACGACTTA
TGTTACTTACCGCTAGTTATCTTCTACCCTGCAGAAGTAGTAGCCGCAAG
TATTGTATACATCGCACTGGAAGTAACACATTTGGAAATCCCCGAACATA
AAGAAGGCAAACGATGGTTTCAGATTACTCCATCAAGACGAGAAAGCTTT
GGAGATTGGAGACGATTATTGGAAACTCCATGACAGCGTGACAGCTTGTG
AACTGATAGTTTTGAGATATTTGAAATTTCAAGTAACTTTCGATTCACCA
ATCAAGCTATTAGCGACAACCTGTTTGTATTTGGGAGCAAAAATCGAAGA
AGAACCCCAAAAAATTCGTGATGTCATCAACGTTGCACACAGATGGAATC
ATATTTGGGAGATCATAAAGTAGCAATTGATTTCATCAAGTCATGTGGTA
GCCATCTTTGTTTATCTGCGTCACCCATAGCAACGGGTTGTGTTTTGTAT
CATCGCATCGTGCGCAAGCAGCTGGAATTGAAAGAACGGGATGTGGACAT
TGAAAAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033112XLOC_033112Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052375-exon-scaffold_213-1575043694:989414..989675TCONS_00052375-exon-scaffold_213-1575043694:989414..989675Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1575043694:989010..989095TCONS_00052375-exon-scaffold_213-1575043694:989010..989095Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1575043694:987456..987588TCONS_00052375-exon-scaffold_213-1575043694:987456..987588Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1575043694:985672..985899TCONS_00052375-exon-scaffold_213-1575043694:985672..985899Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1575043694:984378..984969TCONS_00052375-exon-scaffold_213-1575043694:984378..984969Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1575043694:976291..976317TCONS_00052375-exon-scaffold_213-1575043694:976291..976317Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1510915933:989414..989675TCONS_00052375-exon-scaffold_213-1510915933:989414..989675Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1510915933:989010..989095TCONS_00052375-exon-scaffold_213-1510915933:989010..989095Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1510915933:987456..987588TCONS_00052375-exon-scaffold_213-1510915933:987456..987588Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1510915933:985672..985899TCONS_00052375-exon-scaffold_213-1510915933:985672..985899Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1510915933:984378..984969TCONS_00052375-exon-scaffold_213-1510915933:984378..984969Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1510915933:976291..976317TCONS_00052375-exon-scaffold_213-1510915933:976291..976317Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1491911889:989414..989675TCONS_00052375-exon-scaffold_213-1491911889:989414..989675Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1491911889:989010..989095TCONS_00052375-exon-scaffold_213-1491911889:989010..989095Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1491911889:987456..987588TCONS_00052375-exon-scaffold_213-1491911889:987456..987588Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1491911889:985672..985899TCONS_00052375-exon-scaffold_213-1491911889:985672..985899Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1491911889:984378..984969TCONS_00052375-exon-scaffold_213-1491911889:984378..984969Clytia hemisphaericaexon
TCONS_00052375-exon-scaffold_213-1491911889:976291..976317TCONS_00052375-exon-scaffold_213-1491911889:976291..976317Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052375-proteinTCONS_00052375-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:976291..989675 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.2558 32.3394 22.4003 19.7728 15.5631 12.3995 15.0818 15.226 13.4387 10.623 11.7243 7.22142 7.27464 6.2847 10.4418 11.4954 19.1596 17.2716 6.20135 7.44149 10.2691 9.10575 18.1034 17.417 12.0162 13.3368 9.60768 7.56259 11.0496 12.19
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013763Cyclin-like
IPR006671Cyclin_N
Blast
BLAST of TCONS_00052375 vs. Swiss-Prot (Human)
Match: FA58A (Cyclin-related protein FAM58A OS=Homo sapiens GN=FAM58A PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.970e-35
Identity = 68/216 (31.48%), Postives = 127/216 (58.80%), Query Frame = 2
Query:  134 FIKSCGSHLCLSASPIATGCVLYHRIVRKQLELKERDVDI-EKYLLATTCLYLGAKIEEEPQKIRDVINVAHRLLHQDEKALEIGDDYWKLHDSVTACELIVLRYLKFQVTFDSPIKYILMFCKSLEDWLPDSNILHQSKLPQICWNMVNDLCYLPLVIFYPAEVVAASIVYIALEVTHLEIPEHKEGKR-WFQVLCPGIKENKLKDIGCKILTLY 775
            FI   G  L + + PIAT C +YH+         E ++D  + YL+A + +YL  K+EE+  + RD+INV++R  +   + LE+   +W+L DS+  CEL++LR L+FQV+F  P KY+L +  SL++WL + +   ++ +    W ++ D  +  L + + A+ +A +++Y+AL+V  +E+P   E ++ W+QV    + +  + +I   ++ +Y
Sbjct:   33 FIMEAGVKLGMRSIPIATACTIYHKF------FCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWL-NRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWWQVFNDDLTKPIIDNIVSDLIQIY 241          
The following BLAST results are available for this feature:
BLAST of TCONS_00052375 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FA58A3.970e-3531.48Cyclin-related protein FAM58A OS=Homo sapiens GN=F... [more]
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