TCONS_00052562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052562
Unique NameTCONS_00052562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052562 ID=TCONS_00052562|Name=TCONS_00052562|organism=Clytia hemisphaerica|type=transcript|length=1809bp
TTGAAAGTTGATAAGAATGACTAGATCCAGTGTTCGAATCACCATCAAAA
AACCACTTTCTGCTGATGAAGAATACAAGAACGCACTAGAAGATTTGGAA
TCCGAATTCAAATCACAACAGAAAAACATACAAGACCTcaacgaaaaagt
gaaaaacaatCATGAGGAAACAACGAAAGACCATCAAGACCAATTAGAAA
AACTACGGACGGAAGTCAGGACGAAAGAAGATGAAATTTTCGTATTAACC
AAAACATTAGAAGACCTTGAAAATGAGTATAATTCACAGGAGGACCAatt
gaaagagaaaaataaatgtgtAGCAGAGCTAGAACATATTTTAACAGACT
ATGAACAGAAATTGGAGGATTATGATCATTGTAAGAGAGACTTGGAGAAA
GCTGTCAATGCAGTTCAAGAACAAGAAATTGATTACCAAATGCTCAAGAA
GGAGTATGATGAAATGAAATCGGTGCATTCTGAATCACAAGCTAACGAAG
AAGAAGTGCAACGCCTTCAAATAAAGATCGACGAACTGGAGCGAGACTTG
ACAGATCAAACCAAACTGGTGGACGCTTCTGACGAGGAATTGAAAAGGCT
GGAGAAAGTTAATGAAGAAAAAGAGGTGCGGATTCATAGACTCGAagaag
aactgaataaaaatgaaaaagaatacgATGATGTCAAAGAACAAttATCG
ACGCTTCAAACGGCACTTGAAGAAATTGAGACGGAAAACAAAACGCTGCA
AGAAAAGATACAAGAAGGAACGATATCATCCGATTCTCTCGAGCAAAAAG
ATCGCGAAATACGAAACCTCAACACAAAGTACGAGAAGCTGGACAAGTAT
CTTACCGAACGTGAAAACGCATTAGAGTTATGTCGTGATGAACTGAAAGG
GGTGAAGAACGCCAACCGTGATCTGAGGATGGAAAAAGATAATTTAGAGA
ATCAACTGTTCGAACACAAGTCAACTGTGGACCGATTGGAAAAACAGAAG
GACAGGTTTACGAGACCGAAAGAAGACGTTGCTTTAGTTTCTGCACATAA
CGAACTGAAAGCTAAACACGAGGAAACGACCAAACAGATTCAAGAATTAA
GGGGAAAACTCTCTCAATACGATGATACGATGAAAACGAAAGACAATTCC
ATATCAGCACTCGAGAGTAGTCAATCCGAACAAAATGAAATTATATTTGG
CCTTGAAAAACAACTCGAAGAAAGCAACGCCAAAACAGAACAAAATCAAA
AGAATATCGAAGAGGTATTAGatattggaaatttttgataTGCTTACTGC
TTGCTCATGGGAAAATAAAGATAGTAGGAATAGGGGTTACCTATCAGAAA
ATAAAGTACAATCACCATACGAAGTTGAAAGTTTCGAGGCCCTATTTCCA
AAAGTTTatttcccaaattttcaaaGGAATTAGAGTGGAGGTAGCAAATA
CAAGCTCTTTAtatgaaatttcacttttttcctcTACGCAACACtttcct
ttttggacctaccccggtgtaggtcctataaattaacctctgtccgtttG
TTCGTCCatccgttcgttaccaacttttctcgagattggctaaatagttt
tttcggattttttgcacaaagatgtgtaactataaacccttgaatgtgac
ggagcccgattttcgaaagaaaatctttttgggcaaatttgggccaaaaa
acggctaaaaaacgggtttcttggactttgaaaaattggatcattaattt
tttctgattttttgcatgaaagtagggtaccatcataggtaaaagatggc
tcaaaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_218:201415..207424+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052562 ID=TCONS_00052562|Name=TCONS_00052562|organism=Clytia hemisphaerica|type=transcript|length=6010bp|location=Sequence derived from alignment at scaffold_218:201415..207424+ (Clytia hemisphaerica)
TTGAAAGTTGATAAGAATGACTAGATCCAGTGTTCGAATCACCATCAAAA
AACCACTTTCTGCTGATGAAGTATGGAGTAGTTAATTATATTCTATctaa
ttttctttgagatatttttgaataattaaatttgatttttagagACCTAA
CCCTTTGTTTCAGGTAGCTTTTCCTTTATAGTGAAGGACCTTTTCCTCAT
AACACGCAAGTTGAATCTTTGACGTTAGCTTAGCTTATTACCATTGATAT
GGCTtcatattttgaccaattttattttcattcttaTAACTTCAGGAATA
CAAGAACGCACTAGAAGATTTGGAATCCGAATTCAAATCACAACAGAAAA
ACATACAAGACCTcaacgaaaaagtgaaaaacaatCATGAGGAAACAACG
AAAGACCATCAAGACCAATTAGAAAAACTACGGACGGAAGTCAGGACGAA
AGAAGATGAAATTTTCGTATTAACCAAAACATTAGAAGACCTTGAAAATG
AGTATAATTCACAGGAGGACCAattgaaagagaaaaataaatgtgtAGCA
GAGCTAGAACATATTTTAACAGACTATGAACAGAAATTGGAGGATTATGA
TCATTGTAAGAGAGACTTGGAGAAAGCTGTCAATGCAGTTCAAGAACAAG
AAATTGATTACCAAATGCTCAAGAAGGAGTATGATGAAATGAAATCGGTA
TATTGTGAAcgcatgtttaaaaaaaatgatgtCACCCCGTCAAGAACGGA
AAGACCGGCCTTTCACCTTTTTCTATAACACCAAACCATACCTTTTCTCG
TGATTTCTTTTTTGAGGCAATAAATTGGTTTCAGGGCGCCTCATTGCACA
GTGACAAAAAAGATCTTAAAAAAGacctagtttgctagtctatacAAAAA
CTTTATTTGGGTTTTCTTGTAACACGGGTGACTTGAgtcagttttctttt
caatttagtGCAACTTTTCTATGCAACCAATAAAAGCTGATGGTGGCTAT
TTTCCCATTGTTCAAATTTTAATCCCTAGCTCATTTTGTTTTAACAActa
aatttgttttctttttatattgaagGTGCATTCTGAATCACAAGCTAACG
AAGAAGAAGTGCAACGCCTTCAAATAAAGGTATCTAATGTCATTAAAACC
CTAAAATTTGTGATTCTTTTTATTGCATTTAATAGGGTAACAGAATAAAT
CGTAATTGTTTGGAGTAATGATTAATGGCTTAATGAAAACCTGCCTAACC
TACCTATCATGATATCTTCACCAagattttgacctttaaaaaCTTCTCCG
AAACTCTTTATTTTATACAGTAATAACTATGAATATGGAATCTTAACACT
TAGTTTTtggaataaattttgaaatagagCAATTATTATGAACATCAAAC
CTGATGATTAAAAACCTTCCTATCAAATACATTTTCAAAATCACTCTCAC
GTCTaaactaccttaagtggataaatttctGCGTGTACTAATTTTTGCGA
GAAgagaatttaaagatttcgcgtggattaaattttgcgaaaatggcctt
ctttatttaatttcgcgactatataaattgtaactagaaaagagatgtgt
tttttaatcgaacaaagacaaagacaaagtcactcaaaaactttcaaaaa
acttaaaaaattttattttcgcgattgtaaaattcaaataatttcgcgtg
gactaattttcgcgaatcaaaggccttcaaaatttttgcgtggactaaat
ttcgcgaaaatggccaaaattcgcgaaaaccgcgaaaatttatccactta
aggtataatGTATTTCTTAAGATCGACGAACTGGAGCGAGACTTGACAGA
TCAAACCAAACTGGTGGACGCTTCTGACGAGGAATTGAAAAGGCTGGAGA
AAGTTAATGAAGAAAAAGAGGTGCGGATTCATAGACTCGAagaagaactg
aataaaaatgaaaaagaatacgATGATGTCAAAGAACAAGTACTTACGTT
TCTTCATTCACTATTTTTGGTCCCCATTTAACTTTAGTTTGTCATAAATC
AAAAGGTGGCATTAATGATACTAATGATAACATAGCCCGAAGGGTCTCTT
CATGGTAGAAAAGTGAAGGTAAttcttggtaggatttcctactaAGAAAG
TAACGCCCCATCATCTAGAAATTAGAAGACGCGTTCGTAGCCTACTTTTC
TTAATTTGTAagctttaaaatgctaaatTCAATCCATATCGTCTCGAAAT
CTTTTGTATCAAATTGTCTTCACTTCATTTGGCAAGGAAAGCTTCAAAAC
TGCTGTTTCTTCGAGTTTCACAGATATCTTTGCTTTATCCATGTTTGTTA
CCTTTTGAACTCGAACCAAAAAGTTCCCCTACATTTAATGAGTTTTCGCT
GATtgtattttctcatttttagttATCGACGCTTCAAACGGCACTTGAAG
AAATTGAGACGGAAAACAAAACGCTGCAAGAAAAGATACAAGAAGGAACG
ATATCATCCGATTCTCTCGAGCAAAAAGATCGCGAAATACGAAACCTCAA
CACAAAGGTTTGACTTTgttctaaaattttattaatcaACTTTCTCTGCG
TCTAGTAGTTCTGGAAAACCAATTTCTCTCTTAATTGACCTGACTGATTC
GATTATAAGTGCTCtcgataaaaaaatgtttaaatgattttttgattGGT
TGTTAAGCTTGGAGATCCTACCTGTTTATGGATCTTGTAGTTTGTTTGGT
TCTTTGTCAGACTTTTGGTCGCATTTCATTGTGTTGATAGTTTAAAAGTT
TTGTCAGTTGTTTTGTGTTCTGGAAAGCATTCAATTCATGACTTATTGGG
TTGGACGGAACTAAAATTCAGCATGTTCTTTgcattttctattaaaaaaa
tttgaaactgaCCTGGAAAAAAATCATACTTTCATGTATATCATTAATAT
CATAAAATCTTGTAGACGAAAGAAATGTTCTGTTGGAAGACTTCTCCaaa
actatattcactcagttTACCTACCTTTCTCGTCGCGCTCGTTCTCAAAA
TACTTTGACCATCCTTGCAATGATGTTTCTTCAACAACTACATTAACACC
GGACAGATTGGCCTATTTAACTTTATGCTCCCCGAAACCTTTGACGGAAA
CTCGAAACACAATGGAATGAGCATAAAACATTACAAGATGATAGATAACA
ATCCATCTTGATCAGGAACGTACCAACATGTTAAGTCGattataaattca
tgttttccTTAGTTTCTCAAGAGAAACAAATCATACACCGCTAATCGGAT
CTGctgaaaaaattgataaaatttctGCTCGTGTACCCACCAAACTTAAT
TTTTCGTCGTTGAACATCAATAAAAATCGAAAGTAATGTGTTTCATTTTG
TTAGTACACAAACCATTTACCTTTGTCTCTTGTAGAGAAACATGCTAACG
AGGTGGCAATTTAGTAAATTATATGATGCACGCTATTTAATGGTCCTTTT
AATTTGGTATTCGAAAATTGTTTGGTATTCTCTGGTATATTATATCACTG
TCGTTTATGCTTCATTCAAGTAGATTATGGAGATATAGCGTAGTTGAATT
GATGATAGCAAGTGTATAAAATATTAATCATGGCGGGATAATTTTATTTG
ACTGATACATACTTCCACATTATAATAGACATTCTTTTATGATTTAAAGT
CTCCTTTTGCGCTGTCTTTAATCGTGTAGATTAGCTTTGAGATAAATGGT
TTACATCACTTAAAGAACGACAACATCACCatttttaaatatcaaaatca
taTACAATTTTGTTATTATAAATCATCATATAAAATTCATCATGCCGATT
TTATACTATCATCGTTTTACTCGACATTAATTTGTTTTTTCCTATCCGCA
ATACATATGGCATTCGATGAGTCTTTTAGCTACACTTGTACGTGTTTTCA
GGTGTATTTGATGGAGCGGAGTGGATTTTTTGTCGGGTCTCTATTATATT
TGGTATTTTATGGAAGTGTGAATTGAAGGCTTGCCTCTCTTACCTCAAGA
TTGGATGACTCGCTGATCTCACAAAGTTGTTACTAAAGCTTTTTACCTTA
TAAAAATTTAGTGTGTTAGACAAAAATAGTTGTTGTAAAAATGCCATATC
GTGGTTTGTTGTTCAACAGTTGTCAGTCGCCGAGAAGCAGATATAAAACT
TGTTGCCAACAGATCGTTGACAGGGTACTGACCACTGAATTCATTATTTT
GACAGTACTAGCACTATATGTTCATGTTGAATTGCACGAAAGTGTTTGAT
CCATCACCCTTCAACCCTAGAAAATCTCTTAAAAACTCTATGATATGAAT
CTCGCTAAACTTGGACGAGTTTCAATCCCTTCATCGAGCGTTCAAATTAT
AGTAGAGTGtataaaaagtttcatttttctcacTTTATAGTCGTTATGCA
ATTTGGTCTTATGCTAGGATATTTCAAGATAAATATATTTCCtctaaaaa
agctaaaaaggTACTAAAAAAATCGTTCTCACAAAAATTGTTGAAGTACT
ACTTACGAATGCTTGTAATCACAGGAATTTTGCAAGGGGTTGACACCAAA
TATGAATGTTCTCTTTCTTCCTTCAGTACGAGAAGCTGGACAAGTATCTT
ACCGAACGTGAAAACGCATTAGAGTTATGTCGTGATGAACTGAAAGGGGT
GAAGAACGCCAACCGTGATCTGAGGATGGAAAAAGATAATTTAGAGAATC
AACTGTTCGAACACAAGTCAACTGTGGACCGATTGGAAAAACAGAAGGAC
AGGTTTACGAGACCGAAAGAAGACGTTGCTTTAGTTTCTGCACATAACGA
ACTGAAAGCTAAACACGAGGAAACGACCAAACAGATTCAAGAATTAAGGG
TATgttgaaatgtttttgatttgttgttgaATATGCAACACACATTAATT
ACCCTTTTCCTTAACAAGTTTTTGAATCGTTCGCTGAATGATCTTAAACG
CGTAGCTTTTTAAACTTCAACTGAATCTTCTGCCCTAagatactttactt
ttttattcattcagaaTTTCCTTTTAAACTGCAGATTGCTTTCACAATAA
GCGGGTTGGGTAGAGTAGGAATAAATTATACATTTTCTCCACTCAGTCAC
GCTTGTGCGTATGTCTGTACGAGATTTTCGGTGCAGCTAGAAGACTTAAA
AGAATTTCTTCACACTAACTTCTTTACTCGAGAAAACAAAATAGTGAAAG
CCTTTTAATATTGCTCcctaaaaatttatttaaagtcGATTTAATATTTC
CAGGGAAAACTCTCTCAATACGATGATACGATGAAAACGAAAGACAATTC
CATATCAGCACTCGAGAGTAGTCAATCCGAACAAAATGAAATTATATTTG
GCCTTGAAAAACAACTCGAAGAAAGCAACGCCAAAACAGAACAAAATCAA
AAGAATATCGAAGAGGTATTAGatattggaaatttttgataTGCTTACTG
CTTGCTCATGGGAAAATAAAGATAGTAGGAATAGGGGTTACCTATCAGAA
AATAAAGTACAATCACCATACGAAGTTGAAAGTTTCGAGGCCCTATTTCC
AAAAGTTTatttcccaaattttcaaaGGAATTAGAGTGGAGGTAGCAAAT
ACAAGCTCTTTAtatgaaatttcacttttttcctcTACGCAACACtttcc
tttttggacctaccccggtgtaggtcctataaattaacctctgtccgttt
GTTCGTCCatccgttcgttaccaacttttctcgagattggctaaatagtt
ttttcggattttttgcacaaagatgtgtaactataaacccttgaatgtga
cggagcccgattttcgaaagaaaatctttttgggcaaatttgggccaaaa
aacggctaaaaaacgggtttcttggactttgaaaaattggatcattaatt
ttttctgattttttgcatgaaagtagggtaccatcataggtaaaagatgg
ctcaaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033241XLOC_033241Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052562-exon-scaffold_218-1491911889:201415..201484TCONS_00052562-exon-scaffold_218-1491911889:201415..201484Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1510915933:201415..201484TCONS_00052562-exon-scaffold_218-1510915933:201415..201484Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1575043694:201415..201484TCONS_00052562-exon-scaffold_218-1575043694:201415..201484Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1491911889:201710..202111TCONS_00052562-exon-scaffold_218-1491911889:201710..202111Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1510915933:201710..202111TCONS_00052562-exon-scaffold_218-1510915933:201710..202111Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1575043694:201710..202111TCONS_00052562-exon-scaffold_218-1575043694:201710..202111Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1491911889:202490..202543TCONS_00052562-exon-scaffold_218-1491911889:202490..202543Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1510915933:202490..202543TCONS_00052562-exon-scaffold_218-1510915933:202490..202543Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1575043694:202490..202543TCONS_00052562-exon-scaffold_218-1575043694:202490..202543Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1491911889:203236..203403TCONS_00052562-exon-scaffold_218-1491911889:203236..203403Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1510915933:203236..203403TCONS_00052562-exon-scaffold_218-1510915933:203236..203403Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1575043694:203236..203403TCONS_00052562-exon-scaffold_218-1575043694:203236..203403Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1491911889:203837..203971TCONS_00052562-exon-scaffold_218-1491911889:203837..203971Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1510915933:203837..203971TCONS_00052562-exon-scaffold_218-1510915933:203837..203971Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1575043694:203837..203971TCONS_00052562-exon-scaffold_218-1575043694:203837..203971Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1491911889:206041..206313TCONS_00052562-exon-scaffold_218-1491911889:206041..206313Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1510915933:206041..206313TCONS_00052562-exon-scaffold_218-1510915933:206041..206313Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1575043694:206041..206313TCONS_00052562-exon-scaffold_218-1575043694:206041..206313Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1491911889:206718..207424TCONS_00052562-exon-scaffold_218-1491911889:206718..207424Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1510915933:206718..207424TCONS_00052562-exon-scaffold_218-1510915933:206718..207424Clytia hemisphaericaexon
TCONS_00052562-exon-scaffold_218-1575043694:206718..207424TCONS_00052562-exon-scaffold_218-1575043694:206718..207424Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:201415..207424 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.664124	1.0492e-06	2.15526e-06	0.000442706	0	0.35654	0.653047	0.17468	0.559104	1.88981	2.54113	1.26536	0.71538	0	0	2.15737	3.76564	0	0	0	0	0	0.660478	0.401051	0.647885	1.29596	2.84618
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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