TCONS_00052610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052610
Unique NameTCONS_00052610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1548

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052610 ID=TCONS_00052610|Name=TCONS_00052610|organism=Clytia hemisphaerica|type=transcript|length=1548bp
tgcagatataaaatgtaaaattaaagtgaaattgacaaaatgacaaataa
aACTGGAGGCTATGATGTTGAATTTGTACATGAAGACATATATAGTAACT
ACAGCACATGTTCCATATGTTTGCTTGTTTTACGTGAACCAATGCAAGCA
CAAGACTGCGGACATCGTTTTTGCAAAAGCTGTCTAGTTGGTCTAAAAAA
ATGTGAAAATGATGACTATATTTGTCCTGAAGACAGAAGTTCAATGAAGt
tATTCAGTGACAAGGGGAGAGAACGAGAGATTTTAGGAATTTTGGTGAAA
TGTACTAACAATAAAAGTGGGTGCGAATGGAAAAATGAACTGCGCCAACT
AGAGGATCACCAATTGGAATGTGGTTACGAGGAAACCAAGTGCGTGATCA
CATCCTGCTCAAAAAGAGTTCAAAGACGAATGTTAGACTTGCATCACGCA
ACAGAATGCATATATCGATTTACAACTTGTTTGTATTGCACCTGATTGCA
CAGAAGAATATATGCATTGCGATGAAGAGGATCACATGTTGGAAtgtgaa
aaatttttgttatgCTGTGACTACTGTACAGAAGCGAAAATCCCAAGAAA
AAAGATGGACGGTCATATTTCAAATGACTGTGTCAAAGTACCGCATTCTT
GTCCATTCAAAACTATAGGCTGCCATGAAAAGcTTCTGTCAGGAGAGTTA
GCCAAACATAACCCAAGTTCGATTGAGAACCATTTGCTTCTGGCACTGAA
CCAAATCAATAGACAGAATGAGAAGATAATAAAGTTAcaagaaaatctac
aaaaagcaAGTCGATCGCAAAATAATGCGTTGATTGAGCTTCGATCATCG
TCTGTTTTTAGCCAAGTTCACGTTTTTAAGAttcaaaattttgctcaaaG
TTTATcgtttaaagaatatttttattctCCTCATGGATACAAATTCAAAA
CTTGGACCACATTAAATGGCGAATCTGATATTAGTCTTTGGTTTCAAACT
GTACAAAGCCCTTTTGATGATGCATTAGAATGGCCAATGAAGCTAGAATA
TCTTAGATGTGTCATCATAAACAAAAGACTCAAAGGGAAATTACCTCGCA
TAATGTGGAATGGAACCGATGATATGAATAGCCTCATTCTTAAGCCACCA
CACATGACAAGTGTTGGGTGGAATCGATTTATCCGATCTCCGAAGCTTGC
CTCTATGATGATGATGGCACATTGACAATTcgcattgaaataaaatttct
tgatgaataaatatttcaaaactNTGATGATGATGGCACTTTGACAATTc
gcattgaaataaaatttcttgatgaataaatatttcaaaactgtaATACA
GTAGACTTTCCATAATTCTAACGGCAACGGTCCCAACGAATAAGTACATT
CGACGGTTCGAGTTTTGGGGACTTTACTTTATAATGTGTTTACATATACA
ATAACTGTATCACTGTTTGTGATAAGAAGAATACATATTCATGCGTGATA
AATTATTTAACCCTGAAATACCCTGAAAATGATACTCCACAAAAGGGT
Run BLAST on NCBI

protein sequence of TCONS_00052610-protein

>TCONS_00052610-protein ID=TCONS_00052610-protein|Name=TCONS_00052610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MHCDEEDHMLECEKFLLCCDYCTEAKIPRKKMDGHISNDCVKVPHSCPFK
TIGCHEKLLSGELAKHNPSSIENHLLLALNQINRQNEKIIKLQENLQKAS
RSQNNALIELRSSSVFSQVHVFKIQNFAQSLSFKEYFYSPHGYKFKTWTT
LNGESDISLWFQTVQSPFDDALEWPMKLEYLRCVIINKRLKGKLPRIMWN
GTDDMNSLILKPPHMTSVGWNRFIRSPKLASMMMMAH
Run BLAST on NCBI

transcript from alignment at scaffold_218:669616..678457+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052610 ID=TCONS_00052610|Name=TCONS_00052610|organism=Clytia hemisphaerica|type=transcript|length=8842bp|location=Sequence derived from alignment at scaffold_218:669616..678457+ (Clytia hemisphaerica)
tgcagatataaaatgtaaaattaaagtgaaattgacaaaatgacaaataa
aACTGGAGGCTATGATGTTGAATTTGTACATGAAGACATATATAGTAACT
ACAGCACATGTTCCATATGTTTGCTTGTTTTACGTGAACCAATGCAAGCA
CAAGACTGCGGACATCGTTTTTGCAAAAGCTGTCTAGTTGGTCTAAAAAA
ATGGTATAGTTCATAGTTTAtatattttggtattttggttGAAAGTACCA
AAACTTGAGAACTTAATACACTTCCTTTGAGGTTTAAGAATTTGTTGCTT
AGTTAAATAGAATATACACTTTGCTACTGACATTAAAGAAGAATGAAAAT
AAACAATTGAAATTCTCAACTTTTGTGCTTGCGCAGGgagtaaaaattgt
tttttttctattgttttgaaatgctgtgtaagcaaatggcaGGAGATAGG
TTAAATGATTAAAGTTGGTGTTAGGTCtactttaatttgtttttaaaatt
caatttatgGTCAACATGACTTTATATATGTCTATCACGGAAtggtttaa
tttttttactattgttttaatgttttttgcaGTGAAAATGNGAATGGTTT
AATTTTTTActattgttttaatgtttttttgcaGTGAAAATGATGACTAT
ATTTGTCCTGAAGACAGAAGTTCAATGAAGGTAATGCTAatgcaaaatta
tattttatttctgTTTGTTTATTGTCTTTGATTGATGTTTATGGTCATTT
TATTCGGTAGTGTGAAtatcttggtgttttttttatatttcagaaATGTT
GATTTTCAGGGCTTGCCTCAAATGCTAAAAGTGGGCCTTCgagtattttg
aaaaatagtgaAGTTGAGACTATTTTATCTGAttcatttttgttttagtt
ATTCAGTGACAAGGGGAGAGAACGAGAGATTTTAGGAATTTTGGTGAAAT
GTACTAACAATAAAAGTGGGTGCGAATGGAAAAATGAACTGCGCCAACTA
GAGGTAAGTTTTATTTACAAGTAGGATAAACTTGAATTTTGTACTTCATT
TCTTCAAATCTAAATTGAAAgacaatttttggacctacctccgggtaccc
cggtggaggtcctttaaattaaccaacgttcgttcgttcgttcgttcgtt
cgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcg
tctgttgccagcttttctcgggattgactcattagttttttctgattttt
tgcacaatgatgcaaaatgacaatgtctaaaatgtgacggaggccgattt
tcggaaaaaaaaattttccggccgaaaatgccagaaatatcccggaaaaa
ctggttttttggcactttctcgagattttatcattagttttttctgattt
tttgctcaaagatgcgtattaacagtgcccaaaacatggccgagtccgat
ttttgagaaaattttttttccggccgaaaatgccggaaataggccggaaa
tcgccgtttttctggattttcattggactttttccttataattggttgtt
ttttcattcaaaaacaatattaatagaaatgcccaccatcaagcatgttt
caattttcaataaagttgatttttgaagccggaactattcaaaaattgcc
ggaacaaccttttttcgccggaaagacagtatttcttatatttctcgagc
tgtactttatatttttttattaaattttgcacgctgatgcaaaatgacaa
tacctaaaatgtgacagagcccgattttcgaaaaacatttttttccggcc
gaaaatgccggaaatatgccggaaaaactggtttttggcattttctcgag
attttctcattagtattttctgattttttgcacaaagatgcgtattaaca
atgcccaaaacatggcagagtccgatttttgagaaaaatttttttccggc
cgaaaatgccggaaatatgccggaaatcgccgtttttgcagattttcata
ggattttttcgtttcatgtctttgtttttttcaaacaaaaacatcatttg
taagaatgtccacgattaagcatggttcaattttcaatgaaactgatttt
ggtacaggaaaatcgccagaacagccgagaattgccggattccatgaatt
tctcgagttgttttcgtattattctgcattttcatactattgttctcatt
ttccaattttcttattacatcaatcttcaggtaggtccattcagcatgta
gcttgtttttcTTAGGATCACCAATTGGAATGTGGTTACGAGGAAACCAA
GTGCGTGATCACATCCTGCTCAAAAAGAGTTCAAAGACGAATGTTAGACT
TGCATCACGCAACAGAATGCATATATCGATTTACAACTTGTTTGTATTGC
ACCTGATTGCACAGAAGAATATATGCATTGCGATGAAGAGGTTTGGTTTT
GTCTATTTGCTTATGATACCTCTCTTGGGGAGGTGCACCAAAAAACGTAT
ACAGGTTTGgctagatattgtgagctttaggatttaatttttttgttcat
tctttatttattgtatagaggatgctctaactttgAGCTATCAaacatta
ggtttgaaaaagtaattcaaaagttatttccaaaaaacttttttcctgtg
tcaaaatttcaaaagatcattaaaaaaagcaatcacgctataaatgaaac
aaaatgacaataaaacaattttattgtttttttattgttttttttcttat
tcataTTTTACCAACAGTTTCTCCATTTTATCTGCACGTCATATGGACAT
TTCTAACacgagcaaactcaatgcagacccaagttctttcagcaactagt
cgaggaatggtgatctttttttcaaaagttttcacaCATAGCACACAAAT
AACATCAAAACCACTCTTGGAGATATCGAAAACTTTTttcagctttccaa
aaatattatcccacatGAGAATAGCTTGTttaccatatttttaaattccG
TAATTGATTCCgttgatgaacacagttgcattttttggtatttttatgtg
taaagaaggtaagtgtcaagagaaaagtttgctcgctgtttttgatgatt
ttttgaaatttcgacatggaaaaaaaatacaattttacagttttttaaaa
ataattttcaaactactttttcaaacctattgtttgatagctcaaaattc
aagtttgagcatcctctatacaattaAAAAAggatgaacaaaaaatttaa
atccttaAGCTCACAATATTTCGACAAatctgtatactttttttggtgca
cccggtatatttactctaggggctgagttaggtcccatatgcgcatcggc
gtatagtcattttttcttttgatcatgaaagtatagtccttgaagagtca
gaaaacgtgtgtggcgctatttggatcaggcacaaatttccataatggcg
gattttagattttcaaccctttttagccctcctgcttgaaaaaaaatttt
tttttttaactttaaaacatagacatattatacaccaatcgatcacaaat
tttatgctgattaagaaaaaggtcagaatcatggtctgaaaatttcgtta
tctggagatatgaagcacttttgATTTCGattggttccagatttgcgtgg
ctgtaacatttgattggcttactttatttttggagggtcttgcctaccgt
tcaaataataaaattcagggaaagttttttttctacatgaatttcgaaat
ccataatggcggattcaaaactttctttcgtcacatgggctcttaggcca
aggacacttgtatagctatacaagtgtccttgcttaggctctgctagcct
aagaaaaatatttttttgagcttaaaaccctgcataccatataccaatcg
atcagataacaatcagaaattttatgctgattaagaaaaaggtcagaacc
atggtctgaaaatttcgttatcaagagatacgaagtacttacgttttcta
agttttgaaaacaaaagtacttcatagctcgagatagaaaaattttcaga
ccatggttctgacctttttcttaatcagcataaaatttggaaccaaaagt
agtcatttcaaaaaatcaaaatcgaaagtgcatcatatctccagataacg
aaattttcagaccatgattctgacatttttcttaataagcataaaatttg
tgatcgattggtgtataatatgtctatgtttaaagttaaaattttttttt
ttcaagcaagagggctaaaaagggttgaaaatctaaaatccgccattatg
gaaatttgtgcctgatccaaataacgccacacacgttatctggctcttca
aggactatactttcatgatcaaaagaaaaaatgactatacgccaatgcgc
atacgggacctaactcagcccctagagtgaTTGTGAGATTGAGAAACAAA
TCTCTACTATATAATGTTTGcgacttttctattttttggaTGTGGTAAAA
AAGTATTGTTATTGTTACTGTTAGATTTTACACAATTAGGCTCACTTCAT
TCCAATggtaaaaacaactttcaaattctctcgGAATTTTTTCTGGAGAT
ATTGGGGGAACTTGAAAGGTAAGGGAAAGGTCACATATTCACACAAAAAA
GCACAGATTCACGTCGTCACGCAATCAGAAAGTGGATTTTCACATGCACT
CACCCTAGCATGCATTTACagaaccaaaattttttttctgaaatttttaa
caaaactttGATTGAAGAACTGTTCTCACCTAAACTTTGACTCCTTTTCT
CATAGGATCACATGTTGGAAtgtgaaaaatttttgttatgCTGTGACTAC
TGTACAGAAGCGAAAATCCCAAGAAAAAAGGTTAACATTTTTTACCTGTC
TTTccctttttaccaaaaaatgtttaatcggattaaattttgAAGATCTA
TTTTACAAAGCTTAATAATGATTAAATTTTCTGCATTTTTTTCCTGAATC
AGTGTTTTGAAActtcagcaaaaatttgattttttgccTGCCTTTAATTT
TTTAGTTCAGCCGACCCACacgaaaatggaaaaattagGTTAAATGCAAA
ActaaattttgcaaaagtttatCTGATTAAAGAAAACTTGCTGACCCATG
CAAAATCGTACTTTCTGTACAGAAACCAGGGGGGGTATcgagtcagtgta
ctggcccaTAGCTGGTGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNagttagtacagtgtactaaaaagggtggtggt
ctaattttttggaaaaaaatccaaaaatcaagttagtaccctatggtcca
gtacactgacttggtACCCCCCTGCAGAAACCACTCTTGctgcattttct
ttttttggaaaaaaattgtattttctggtttcaggttccttaacggTTTA
TATCCACACATGGAAATCTTTTCTACGCTGACTTGTTGTATGTATAAATA
AAAACAGAcagttttacaatttttttactgaaattGATCTGATTAAAGTA
AAATATAACATTCACTTTATTCAATTTAGATGGACGGTCATATTTCAAAT
GACTGTGTCAAAGTACCGCATTCTTGTCCATTCAAAACTATAGGCTGCCA
TGAAAAGGTATTTCAGTAttctttttatacaaaaaaaacacataaaacAG
GGTAAGAATCGTACCTTCTGTattcaaatcacaaaaattgtcaatttcTT
AGATTTATTTTATCACTGCAAAGTCTGAAAATGTAAAGATTAATCGATTT
CTTATGCTATGGATATTTTCTAGGAtcaagaattttcaattttatttgat
aATTTCTTCACAGGAAAggtgatgcccaaaacttaacTTCATTTAGTTtc
caaagaaatctttttttaaaccggaactccttaaaaatcgccagaacagt
tGAAAGCCCAACAGGTTTCCTTAATTTTCCGAGTTCCACTCAACAGATTT
TCGTGACTTTTTACACAATGAAACAAAAAGTAATTCCCAGACTGTGGCTG
AGTccaattctcaaaaaaatattgGTCACCGGATCCGGAAATGTTCCGGG
TCGGATTCggctgaaattttattttgtacaCATGCTCCTTGTTttttagc
ctcaaaacgaggctaaaaactttGGGACAGGCTAGAGACCTCAAAAAGGT
Ccggtttggctgaaatttggcacacttgttccttgaatgaatatctgggg
gtgtttttttcgttttttcaaaatgttgattTTAAGGGGGTGGTCACAAG
GTTTAGCCCAAAATGACGCTAAAACTTTTCTTTATTATCCAAAAGTTCTC
TGTCgatgtttacaattgggcctacgagtataatttaaaggatactaaag
ttgagccagtgcggttagcacgttctaCATAACCATCacttgtaaaattt
atgaattcTTGCCGATTAACTGACTGATCTAACCAGTTCCTTCTCTTCTT
AattagttttcttttttattgtttagcTTCTGTCAGGAGAGTTAGCCAAA
CATAACCCAAGTTCGATTGAGAACCATTTGCTTCTGGCACTGAACCAAAT
CAATAGACAGAATGAGAAGATAATAAAGTTAcaagaaaatctacaaaaag
caAGTCGATCGCAAAATAATGCGTTGATTGAGCTTCGATCATCGTCTGTT
TTTAGCCAAGTTCACGTTTTTAAGAttcaaaattttgctcaaaGTTTATc
gtttaaagaatatttttattctCCTCATGGATACAAATTCAAAACTTGGA
CCACATTAAATGGCGAATCTGATATTAGTCTTTGGTTTCAAACTGTACAA
AGCCCTTTTGATGATGCATTAGAATGGCCAATGAAGCTAGAATATCTTAG
ATGTGTCATCATAAACAAAAGACTCAAAGGGAAATTACCTCGCATAATGT
GGAATGGAACCGATGATATGAATAGCCTCATTCTTAAGCCACCACACATG
ACAAGTGTTGGGTGGAATCGATTTATCCGATCTCCGAAGCTTGCCTCTAT
GATGATGATGGCACATTGACAATTcgcattgaaataaaatttcttgatga
ataaatatttcaaaactNTGATGATGATGGCACTTTGACAATTcgcattg
aaataaaatttcttgatgaataaatatttcaaaactgtaATACAGTAGAC
TTTCCATAATTCTAACGGCAACGGTCCCAACGAATAAGTACATTCGACGG
TTCGAGTTTTGGGGACTTTACTTTATAATGTGTTTACATATACAATAACT
GTATCACTGTTTGTGATAAGAAGAATACATATTCATGCGTGATAAATTAT
TTAACCCTGAAATACCCTGAAAATGATACTCCACAAAAGGGT

Coding sequence (CDS) from alignment at scaffold_218:669616..678457+

>TCONS_00052610 ID=TCONS_00052610|Name=TCONS_00052610|organism=Clytia hemisphaerica|type=CDS|length=2856bp|location=Sequence derived from alignment at scaffold_218:669616..678457+ (Clytia hemisphaerica)
ATGCATTGCGATGAAGAGGATCACATGTTGGAAtgtgaaaaatttttgtt
atgCTGTGACTACTGTACAGAAGCGAAAATCCCAAGAAAAAAGATGGACG
GTCATATTTCAAATGACTGTGTCAAAGTACCGCATTCTTGTCCATTCAAA
ACTATAGGCTGCCATGAAAAGcTTCTGTCAGGAGAGTTAGCCAAACATAA
CCCAAGTTCGATTGAGAACCATTTGCTTCTGGCACTGAACCAAATCAATA
GACAGAATGAGAAGATAATAAAGTTAcaagaaaatctacaaaaagcaAGT
CGATCGCAAAATAATGCGTTGATTGAGCTTCGATCATCGTCTGTTTTTAG
CCAAGTTCACGTTTTTAAGAttcaaaattttgctcaaaGTTTATcgttta
aagaatatttttattctCCTCATGGATACAAATTCAAAACTTGGACCACA
TTAAATGGCGAATCTGATATTAGTCTTTGGTTTCAAACTGTACAAAGCCC
TTTTGATGATGCATTAGAATGGCCAATGAAGCTAGAATATCTTAGATGTG
TCATCATAAACAAAAGACTCAAAGGGAAATTACCTCGCATAATGTGGAAT
GGAACCGATGATATGAATAGCCTCATTCTTAAGCCACCACACATGACAAG
TGTTGGGTGGAATCGATTTATCCGATCTCCGAAGCTTGCCTCTATGATGA
TGATGGCACATTGAATGCATTGCGATGAAGAGGATCACATGTTGGAAtgt
gaaaaatttttgttatgCTGTGACTACTGTACAGAAGCGAAAATCCCAAG
AAAAAAGATGGACGGTCATATTTCAAATGACTGTGTCAAAGTACCGCATT
CTTGTCCATTCAAAACTATAGGCTGCCATGAAAAGcTTCTGTCAGGAGAG
TTAGCCAAACATAACCCAAGTTCGATTGAGAACCATTTGCTTCTGGCACT
GAACCAAATCAATAGACAGAATGAGAAGATAATAAAGTTAcaagaaaatc
tacaaaaagcaAGTCGATCGCAAAATAATGCGTTGATTGAGCTTCGATCA
TCGTCTGTTTTTAGCCAAGTTCACGTTTTTAAGAttcaaaattttgctca
aaGTTTATcgtttaaagaatatttttattctCCTCATGGATACAAATTCA
AAACTTGGACCACATTAAATGGCGAATCTGATATTAGTCTTTGGTTTCAA
ACTGTACAAAGCCCTTTTGATGATGCATTAGAATGGCCAATGAAGCTAGA
ATATCTTAGATGTGTCATCATAAACAAAAGACTCAAAGGGAAATTACCTC
GCATAATGTGGAATGGAACCGATGATATGAATAGCCTCATTCTTAAGCCA
CCACACATGACAAGTGTTGGGTGGAATCGATTTATCCGATCTCCGAAGCT
TGCCTCTATGATGATGATGGCACATTGAATGCATTGCGATGAAGAGGATC
ACATGTTGGAAtgtgaaaaatttttgttatgCTGTGACTACTGTACAGAA
GCGAAAATCCCAAGAAAAAAGATGGACGGTCATATTTCAAATGACTGTGT
CAAAGTACCGCATTCTTGTCCATTCAAAACTATAGGCTGCCATGAAAAGc
TTCTGTCAGGAGAGTTAGCCAAACATAACCCAAGTTCGATTGAGAACCAT
TTGCTTCTGGCACTGAACCAAATCAATAGACAGAATGAGAAGATAATAAA
GTTAcaagaaaatctacaaaaagcaAGTCGATCGCAAAATAATGCGTTGA
TTGAGCTTCGATCATCGTCTGTTTTTAGCCAAGTTCACGTTTTTAAGAtt
caaaattttgctcaaaGTTTATcgtttaaagaatatttttattctCCTCA
TGGATACAAATTCAAAACTTGGACCACATTAAATGGCGAATCTGATATTA
GTCTTTGGTTTCAAACTGTACAAAGCCCTTTTGATGATGCATTAGAATGG
CCAATGAAGCTAGAATATCTTAGATGTGTCATCATAAACAAAAGACTCAA
AGGGAAATTACCTCGCATAATGTGGAATGGAACCGATGATATGAATAGCC
TCATTCTTAAGCCACCACACATGACAAGTGTTGGGTGGAATCGATTTATC
CGATCTCCGAAGCTTGCCTCTATGATGATGATGGCACATTGAATGCATTG
CGATGAAGAGGATCACATGTTGGAAtgtgaaaaatttttgttatgCTGTG
ACTACTGTACAGAAGCGAAAATCCCAAGAAAAAAGATGGACGGTCATATT
TCAAATGACTGTGTCAAAGTACCGCATTCTTGTCCATTCAAAACTATAGG
CTGCCATGAAAAGcTTCTGTCAGGAGAGTTAGCCAAACATAACCCAAGTT
CGATTGAGAACCATTTGCTTCTGGCACTGAACCAAATCAATAGACAGAAT
GAGAAGATAATAAAGTTAcaagaaaatctacaaaaagcaAGTCGATCGCA
AAATAATGCGTTGATTGAGCTTCGATCATCGTCTGTTTTTAGCCAAGTTC
ACGTTTTTAAGAttcaaaattttgctcaaaGTTTATcgtttaaagaatat
ttttattctCCTCATGGATACAAATTCAAAACTTGGACCACATTAAATGG
CGAATCTGATATTAGTCTTTGGTTTCAAACTGTACAAAGCCCTTTTGATG
ATGCATTAGAATGGCCAATGAAGCTAGAATATCTTAGATGTGTCATCATA
AACAAAAGACTCAAAGGGAAATTACCTCGCATAATGTGGAATGGAACCGA
TGATATGAATAGCCTCATTCTTAAGCCACCACACATGACAAGTGTTGGGT
GGAATCGATTTATCCGATCTCCGAAGCTTGCCTCTATGATGATGATGGCA
CATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033257XLOC_033257Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052610-exon-scaffold_218-1491911889:669616..669818TCONS_00052610-exon-scaffold_218-1491911889:669616..669818Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1510915933:669616..669818TCONS_00052610-exon-scaffold_218-1510915933:669616..669818Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1575043694:669616..669818TCONS_00052610-exon-scaffold_218-1575043694:669616..669818Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1491911889:670250..670295TCONS_00052610-exon-scaffold_218-1491911889:670250..670295Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1510915933:670250..670295TCONS_00052610-exon-scaffold_218-1510915933:670250..670295Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1575043694:670250..670295TCONS_00052610-exon-scaffold_218-1575043694:670250..670295Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1491911889:670514..670618TCONS_00052610-exon-scaffold_218-1491911889:670514..670618Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1510915933:670514..670618TCONS_00052610-exon-scaffold_218-1510915933:670514..670618Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1575043694:670514..670618TCONS_00052610-exon-scaffold_218-1575043694:670514..670618Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1491911889:671881..672055TCONS_00052610-exon-scaffold_218-1491911889:671881..672055Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1510915933:671881..672055TCONS_00052610-exon-scaffold_218-1510915933:671881..672055Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1575043694:671881..672055TCONS_00052610-exon-scaffold_218-1575043694:671881..672055Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1491911889:674421..674495TCONS_00052610-exon-scaffold_218-1491911889:674421..674495Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1510915933:674421..674495TCONS_00052610-exon-scaffold_218-1510915933:674421..674495Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1575043694:674421..674495TCONS_00052610-exon-scaffold_218-1575043694:674421..674495Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1491911889:676645..676722TCONS_00052610-exon-scaffold_218-1491911889:676645..676722Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1510915933:676645..676722TCONS_00052610-exon-scaffold_218-1510915933:676645..676722Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1575043694:676645..676722TCONS_00052610-exon-scaffold_218-1575043694:676645..676722Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1491911889:677592..678457TCONS_00052610-exon-scaffold_218-1491911889:677592..678457Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1510915933:677592..678457TCONS_00052610-exon-scaffold_218-1510915933:677592..678457Clytia hemisphaericaexon
TCONS_00052610-exon-scaffold_218-1575043694:677592..678457TCONS_00052610-exon-scaffold_218-1575043694:677592..678457Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052610-proteinTCONS_00052610-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:669616..678457 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.7795	20.024	7.88994	6.36897	1.21485	0.903522	3.91741	3.85877	2.96955	2.21249	2.44278	2.04693	2.41414	2.83651	4.09228	4.02029	4.79354	4.32201	2.05608	1.59155	2.4849	1.6119	19.4428	16.7926	4.58001	3.88444	2.39784	2.48149	8.9989	11.2958
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001293Znf_TRAF
IPR008974TRAF-like
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00052610 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.507e-20
Identity = 59/148 (39.86%), Postives = 80/148 (54.05%), Query Frame = 1 
Query:   58 GYDVEFVHEDIYSNYSTCSICLLVLREPMQAQDCGHRFCKSCLVGLKKCENDDYICPEDRSSM---KLFSDKGREREILGILVKCTNNKSGCEWKNELRQLEDHQLECGYEETKCVITSCSKRVQRRMLDLHHATECIYRFTTCLYCT 492
            GYDVEF    + S Y  C ICL+ LRE +Q   CGHRFCK+C++  K   +  + CP D   +   +LF D   +REIL ++VKC N   GC  K ELR LEDHQ  C +    C    C +  Q+  +++H   +C  R  +C  C 
Sbjct:   55 GYDVEF-DPPLESKYE-CPICLMALREAVQT-PCGHRFCKACII--KSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQAHCEFALMDC--PQCQRPFQKFHINIHILKDCPRRQVSCDNCA 193
The following BLAST results are available for this feature:
BLAST of TCONS_00052610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF67.507e-2039.86TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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