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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052779 ID=TCONS_00052779|Name=TCONS_00052779|organism=Clytia hemisphaerica|type=transcript|length=4161bpRun BLAST on NCBI protein sequence of TCONS_00052779-protein >TCONS_00052779-protein ID=TCONS_00052779-protein|Name=TCONS_00052779-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1319bp MKNFNESVFNSKLTDIKKPIKVFARVRPFNDDEIGRCEKQAVETFDDEKRRun BLAST on NCBI transcript from alignment at scaffold_22:175117..196651- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052779 ID=TCONS_00052779|Name=TCONS_00052779|organism=Clytia hemisphaerica|type=transcript|length=21535bp|location=Sequence derived from alignment at scaffold_22:175117..196651- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_22:175117..196651- >TCONS_00052779 ID=TCONS_00052779|Name=TCONS_00052779|organism=Clytia hemisphaerica|type=CDS|length=71226bp|location=Sequence derived from alignment at scaffold_22:175117..196651- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052779 vs. Swiss-Prot (Human)
Match: KIF3A (Kinesin-like protein KIF3A OS=Homo sapiens GN=KIF3A PE=1 SV=4) HSP 1 Score: 202.986 bits (515), Expect = 6.069e-54 Identity = 137/387 (35.40%), Postives = 191/387 (49.35%), Query Frame = 1
Query: 262 IKVFARVRPFNDDEIGRCEKQAVETFDDEKR----IKVLDERHSQEMTYHFDGVFAGKDNNQKVYQMTTKPLLRTFLNGINCAVLTYGQTGSGKTYTAMADGCITEF------AIEELFD-LMKLDVLHEYKIYCSFVQIYLEKIYDLFNDDNHDELLVREHPKKGLYVENLTHEEVGCRQDIFALLKKGKELLVTAETNMVRHSSRSHSVFQITIERRKIKAKEVSSQTPDGRDSSFIFEELIVLEDEITLKAKMQICDLAGSERLAKTMVEGVNQVEARHINSSLLELGNVINSLSSGKVTHVPFRNSTLTRLLQECLGSKCLTSFIVCVAPSASESYETRCSLNFGARARTITNKERVTLNVEVDYRILARKMSKRIEELEKEL 1389
+KV R RP N+ E C KQAV DE R + D + T+ FD VF + VY +T +P++ + L G N + YGQTG+GKT+T I E + +F + K + + + S+++IY E++ DL D L V+E P G+Y+++L+ V D+ ++ G + TNM HSSRSH++F ITIE S + DG + K+ + DLAGSER AKT G EA IN SL LGNVI++L GK THVP+RNS LTRLLQ+ LG T + P+ ET +L + RA+ I NK R+ E L R+ K IEEL+K+L
Sbjct: 15 VKVVVRCRPLNEREKSMCYKQAVSV--DEMRGTITVHKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNGTIFAYGQTGTGKTFTMEGVRAIPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYNEEVRDLLGKDQTQRLEVKERPDVGVYIKDLSAYVVNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITIE--------CSEKGIDGNMHVRM--------------GKLHLVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARIN---EDPKDALLRQFQKEIEELKKKL 374 The following BLAST results are available for this feature:
BLAST of TCONS_00052779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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