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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052805 ID=TCONS_00052805|Name=TCONS_00052805|organism=Clytia hemisphaerica|type=transcript|length=2301bpRun BLAST on NCBI protein sequence of TCONS_00052805-protein >TCONS_00052805-protein ID=TCONS_00052805-protein|Name=TCONS_00052805-protein|organism=Clytia hemisphaerica|type=polypeptide|length=589bp MDSPEYGHPQTVKFHHDLNLIEEFNDARQQGPADSETMECFDTVEDVITNRun BLAST on NCBI transcript from alignment at scaffold_220:258322..292987+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052805 ID=TCONS_00052805|Name=TCONS_00052805|organism=Clytia hemisphaerica|type=transcript|length=34666bp|location=Sequence derived from alignment at scaffold_220:258322..292987+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_220:258322..292987+ >TCONS_00052805 ID=TCONS_00052805|Name=TCONS_00052805|organism=Clytia hemisphaerica|type=CDS|length=35400bp|location=Sequence derived from alignment at scaffold_220:258322..292987+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052805 vs. Swiss-Prot (Human)
Match: CSKP (Peripheral plasma membrane protein CASK OS=Homo sapiens GN=CASK PE=1 SV=3) HSP 1 Score: 429.483 bits (1103), Expect = 3.982e-136 Identity = 230/614 (37.46%), Postives = 365/614 (59.45%), Query Frame = 2
Query: 104 FNDARQQGPADSE--TMECFDTVEDVITNLFDSVSSNENL--AVSRNLSKLNSVLHNQKFQALLNIYSRSRTAMNAFNIQDNRKNAEESLYEVTVMLNSLNDY--DNKIQELKDILAKPHVQSVIKTHDTIIREMQGKNNI------FKKSTNHDQSLQLSSNQLAENVTRVRLVQFPKNPNEPMGITLKKTDKKECLVARVIHGGMIHRQGTLHVGDEIKEINGINTSMCSVERLQQILRDASGDVTFKIVPG-------CQNEDRAS---------------------------KEVYFKCLYDYDPRADDMIPCQQAGLSFQCGDVLEVVCKADMHWWQARKVGTKN--VGLVPSTELQEQRIRKMVIERNKGEGAITCLWPKKTNKKSKVNRYTARLNTAFDRLNLVTYEEVIQQKKTYHKTIVLIGAHGVGRRHIKNSLVSRFPEKYASPVPHTSRRQSPNEKHGELWFFETEDRMLKDIGSHQYLEYGKHDGHLYGTKLSSVQDLIKNDRTPVLDIETPALKILRCKEFFPYIIFVSSPISYPESGDPKMDASLQRLIADSTDLKNRYQHFFDYTVINETIDETVEKIVDHLEELAGSSAWIPASWYY 1801
+ D ++ P SE T E ++ + DS+ L ++L L+SV +Q LL++Y + T + I++ +A + EV L ++ Y +N +ELK IL +PH ++++THD + E+ + N D + + ENVTRVRLVQF KN +EPMGITLK + C+VAR++HGGMIHRQGTLHVGDEI+EINGI+ + +VE+LQ++LR+ G +TFKIVP C+ + ++ +++Y + ++YDP DD+IPC++AG+ F+ GD+++++ K D +WWQ + +KN GL+PS ELQE R+ + +E+ K E +C W KK ++Y A+ N FD+L+LVTYEEV++ KT+VL+GAHGVGRRHIKN+L+++ P+++A P+PHT+R +E++G+ ++F + D+M++DI +++YLEYG H+ +YGTKL +++ + + +LD+E ALK+LR EF P+++F+++P P + D SLQRL +S L+ Y H+FD T+IN IDET+ + + +E + + W+P SW Y
Sbjct: 321 YGDPPEELPDFSEDPTSSGLLAAERAVSQVLDSLEEIHALTDCSEKDLDFLHSVFQDQHLHTLLDLYDKINTKSSP-QIRNPPSDAVQRAKEV---LEEISCYPENNDAKELKRILTQPHFMALLQTHDVVAHEVYSDEALRVTPPPTSPYLNGDSPESANGDMDMENVTRVRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRTQSSSCERDSPSTSRQSPANGHSSTNNSVSDLPSTTQPKGRQIYVRAQFEYDPAKDDLIPCKEAGIRFRVGDIIQIISKDDHNWWQGKLENSKNGTAGLIPSPELQEWRVACIAMEKTKQEQQASCTW-FGKKKKQYKDKYLAKHNAVFDQLDLVTYEEVVKLPAFKRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNE---DESLQRLQKESDILQRTYAHYFDLTIINNEIDETIRHLEEAVELVCTAPQWVPVSWVY 926 The following BLAST results are available for this feature:
BLAST of TCONS_00052805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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