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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052815 ID=TCONS_00052815|Name=TCONS_00052815|organism=Clytia hemisphaerica|type=transcript|length=1515bp
ttttagaaaaaaatacaaactaaagcaaaaaaaagttataaaaaatcaac
aatcaataAGGAAACAAAATGACAACGGCCGCTCGACCAACCTTTGATAC
GGCCCGTGGTGGTCAACAACGAGGTGAAGGGAATCTAGCATCACTTACTA
AGCAATATTCTGCCAGAGATTTACCTTCgcatacaaaaatcaaaactagA
CAAATCGGACAAGATACAGCTGAAGAGATCCGTAGCCGTGATTTTAAACA
CGATTTGATGGAACGTGAACGTTCGTCACGTGAGAAAAGCAAGAAAGGTT
CATCCAATTCTAGTGATTATTCATCATCATCGAAACGACAACGATTGGAT
TACGATCGGCATTCTTCGCATCACCACAGTAGCGCGGCCATTGATGCCGA
TGATCCTGTTGATGATGAGGATGAGGATGACTCTGATGACGACAGTGACG
ATGATGACGATACCGCAGAATTGTTGGCAGAATTGCAACGCATCAAGCGA
GATCGTGCTGAAGAAATGCTCAAACAAGAGCAAGAAAAACGAACAGAAGA
TGAACGCATTCGAACGGAGAATCTGATATCGGGCAACCCTCTACTGAACC
AAAACCAACAACAAGAAGGAGACTTCAAAGTCACCAGAAGgTGGGACGAT
GACGTAGTCTTCAAAAATTGTGCGAAAGATGACGACAAACCAAAGAATTC
TGGATTCATCAACGACACGATTCGCTCGGAGTTTCACAAAAAGTTCATGG
ACAAATACATCAAATAGTACATATTATGAAAACGACCACAACAATAGTTA
CTCTTTCCAGCCGGGAAAGTCCCAAAATTTGTTCGAAGTTAAGAAAGATA
TGGATCAAATTTTGAGTTTGAGGGTTTATATCGTACAGAGAGACTGGAGA
ACAGTTCAATTCAGCTCTTGGGTTGGGTGAATGATTATGGAACACAGGAT
AACGAACGAACGGGTATAATACCGGAGTTGCCTAAAGACCCATCTAGATC
TGAAAGGGACTACATTGTGTTTTAAtagagactgttcatctaattGCCTT
GGAATGGAACAGGCTATATGGTTTATTTTGTGCTTAGCGACACGGTAAAT
TCATCATTCGTGTACAAAAAGATATTACTGTATATCAAGAAAATAGAAAC
ATTTCTTTTACTACACTACATCATGCACAAGCACTTCTCTCACCTTGCTT
CAATGCGTTCTTTTTACAagaaatatgtttttaaatttttacgtCGAAAA
ACCGTGGTTCTAATGCCATTTTTCAGGAGTTGCCCCAGACGTGAGAATTC
TGTTTCCCCGGACATTCGGACAGGACCCGATTCGGGTTTAAACCAATTGG
CCTCTTGGCTGAGAAGAGAACGAGAATAACGGGTGCCCAAGCCATTTTGG
CTGGAGTCTTTAAAGACGGCCGTAGTGTCCATCACACTGACCGATACTAA
ATGATAACAATACACTACTGTGGATCTTACAATGAAAGGACTGGGGTGAG
TTTGCGGAAGTTTCT Run BLAST on NCBI protein sequence of TCONS_00052815-protein >TCONS_00052815-protein ID=TCONS_00052815-protein|Name=TCONS_00052815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MTTAARPTFDTARGGQQRGEGNLASLTKQYSARDLPSHTKIKTRQIGQDT
AEEIRSRDFKHDLMERERSSREKSKKGSSNSSDYSSSSKRQRLDYDRHSS
HHHSSAAIDADDPVDDEDEDDSDDDSDDDDDTAELLAELQRIKRDRAEEM
LKQEQEKRTEDERIRTENLISGNPLLNQNQQQEGDFKVTRRWDDDVVFKN
CAKDDDKPKNSGFINDTIRSEFHKKFMDKYIK Run BLAST on NCBI transcript from alignment at scaffold_220:362432..370036+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052815 ID=TCONS_00052815|Name=TCONS_00052815|organism=Clytia hemisphaerica|type=transcript|length=7605bp|location=Sequence derived from alignment at scaffold_220:362432..370036+ (Clytia hemisphaerica)
ttttagaaaaaaatacaaactaaagcaaaaaaaagttataaaaaatcaac
aatcaataAGGAAACAAAATGACAACGGCCGCTCGACCAACCTTTGATAC
GGCCCGTGGTGGTCAACAACGAGGTGAAGGGAATCTAGCATCACTTACTA
AGCAATATTCTGCCAGAGATTTACCTTCgcatacaaaaatcaaaactagG
TGAGAATGTTACACGTTTATTGTATAAGAGCATGTTCTCAACGTAGTCgg
aagaaatgttcttaaaatgttcttattttcactgtTTTGTCAGTATTTTT
GTGCGATTTCCTGGTTTTCTTCAGTCGATATTTGTGTATTAttataaatt
gtaaattttttctcatGTCTCATTCCGacccttttgatttttctctttta
tatACATGTTCTTATTAGAACGTCTTAATTTGTGTCGAGCCTGAAAGTCc
taatttttgacaaatttcagtTTAAAATATCCATTTTCATTCGAATAATA
GTGAACGACTTTACGTGAAAATATTTCCTGTCCACTATTAAAATTATAAG
TGCTATATCTTTGTGGACAGACTACATCCCAGTATTCGACTTTCTTTTCC
ATATTTATCACAGACAAATCGGACAAGATACAGCTGAAGAGATCCGTAGC
CGTGATTTTAAACACGATTTGATGGAACGTGAACGTTCGTCACGTGAGAA
AAGCAAGAAAGGTTCATCCAATTCTAGTGATTATTCATCATCATCGAAAC
GACAACGATTGGATTACGATCGGCATTCTTCGCATCACCACAGTAGCGCG
GCCATTGATGCCGATGATCCTGTTGATGATGAGGATGAGGATGACTCTGA
TGACGACAGGTTAGTTTTTCACATCCCGGACAGGGACTCTAAACCTTTAA
GCTTGGCCCTCACTTGTTGAAAAAATCGCGTCTAATCACTAGACGTCTGC
GTCTACCATTAGACGCGCGTGACTAAGTGTTTGGAACCTCTAGTGAGTAC
ACTCGTTAGACGCGGGCGTCTAATGTTAGACGTGGGCGTTTAGTGTTAGA
CGCCTGGACTTTGACAAAATTTGTTAGACGCGTggaacaaaaaattttgt
tcTGCGCGTCTAACGTTCAAAGGCACCGCAATGTAAACATAATTAAATGT
CCCCAAAGTTGTAAATTCTCGTAATCTTTTCGTAtctttttcgtattttt
ttctCTCTGTTTCTGTTTTTACAAAGTGTTTTTAGCTGATCAGTACTGCT
GCTAATAAAATGCCAAGAGCAAATAGGATCTTACTCTTTGATAGAAGAAG
AAGAGCTTTGTGAAGCCCACAGGCAGTACCCCGTCATATATGATAAGACA
AAAGTCGATCATAagaataatgtcattactgttATTGTTGGCTTTCTCCA
GTGGCCAGAAACCTTAATGTTACAGAGAGACGTTCTCTAGCTGATATTGG
CTGACGCATTCGAGTGGTTTTCTTGCTGATACGATGTTGAATTAGTGAGA
GAAGATGCTCAACGCGAGATCGAAAAAACATTCCACTGTCTTTTAGCAAT
GTTTGAAACAGAGTATTAAACGTTCCATGGATTGGTCTTTCTTGAAAAAT
ATCTCGTACCCAAAACCGCCTGCGACGCGCCTTTCTCCTATTTTGtcttt
ggcccagcgctagcgatagggcctttcatttgcaactttccgtccgtgtc
cttccgctgtctgtccgtccgttttggtagaaacggcgcttcaacaccag
taccacacttttaaattttaccgtctggagagggaaaagcttgctaaagt
tggatactggctataaaagatatattttctgattctgcgctccttcaaaa
caattttcaaaacaaaacaaaatggcggtcgaagcgaggaggttgattca
tattttcttgaacattttctttgctttagtggcNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGATCTATTTCAAcgggtcatacatttgctgttttgca
caggctcgttttcaacacgttacttttcgctgggccttcacgcccaacgg
gcttcttgttttcgTAACAAAAGTATCAGGAGCAAATCTTCACAATTATC
AAAGTAGCTTTCATCATCACTGCTATCCATCTTCTTTCCATCACATAAGC
TGAAAACAAGCTCAAACTCATAACTTCATTTATTCACATTTCCCATATTT
TAATcctttaattcaaaaaagttcatCGTAGTGAGGACAACAAAGACATA
ATTTCTAGACGCACGCGCCTAAGGACTCGACGCGCGCGTCTAATGTTAGA
CGCAGGCGTCTAGTAATTAGACGCGATTTTTTCAACAAGTGAGGACCAAG
CTTTAAAGTTAATGTTAGGGTAAAAGGGgcaattccagaaaaaaatttac
gcCTTATGTTGAGGACTTTTTTTGTGAAAGGTGATcctcctggatttttt
ttttcaattttggatttttgactCCTTAACTTTTTGACTCCTTGacgttt
tactgaccaccctggatttttgaccttATTTTCCTGACCACACTGGATTT
TCCACCTTTTCCACCTCAATTCGATTTTTACGCTCGATAAACCAGACCCc
tggggggtactacccttgtcgaccgacgggggtgctccgctgaggttcaa
aaaatggaccctacgtgggactcgaaatttgcgaaaaaagtgacccagaa
tgggactgaaattccaaaatgttctactttttccccaaattttccagaaa
taggcaccttacgagggactgatttttctattttggtgtttttgcgaccc
tacctgggactcgaaatttgcgaaaaaagtgacccagaatgggactgaaa
ttccaaaatgttctactttttccccaaattttccagaaataggCACCTTA
CGAGGGACtgctttttctattttggtgtttttgcgaccctccctgggact
cgtggaggttaaaaaaggttcCCTggccagcggagcatccccgtaaccca
ttttgccctagtgcccccccccccctccccccgggacCAGACCACTTACC
TCCTCAACAAAGGGAATACGTAGACTATTTCTTGAATAGCCCAATACACC
TATCCACCCATATAAATTGGGTTTTAAAATCCATTGTGAAGAAAAAGAAG
CTTGACTAAGGAGAAGCAATAGCCAAAAAGTTGAGAatcgaaaatatttt
agaaactGGGTTTTTACAGTAAATTATGActatcaaatttcaaattctaa
AGAATACGTTATAAAACTCGCGATATGCCGTGACAGAGGCCCTGAAAACA
TCCAGAAAAACACCTGACTTTCTTTAGGAACCTTCCATAGAGGAGGGATG
GCTTGATTTTACCAAAGTATTGGCACATGACTTCAAATCCTCttctttgt
catttttttggATAGTGACGATGATGACGATACCGCAGAATTGTTGGCAG
AATTGCAACGCATCAAGCGAGATCGTGCTGAAGAAATGCTCAAACAAGTA
AGTTAAAGGACATCATTTATCGTAACTcttaccatttgcttacactgTAT
TTTTTAAACAGAAGATAGAACCTCGTTTTGAATTCAACCGATCGTTGGGA
TGGGCTTTAGTTCAGGCCATAAACAatcatttcaaagatttttcacttca
ttttttcAGGAGCAAGAAAAACGAACAGAAGATGAACGCATTCGAACGGA
GAATCTGATATCGGGCAACCCTCTACTGAACCAAAACCAACAACAAGAAG
GAGACTTCAAAGTCACCAGAAGGTAAGAGGAACCTTCACATTTTAAGGGG
TTTCTCaggggttttgctttgtttttggtaggctGGCGATAGTCTAACTC
TAGTTTCTAAGCCGACGAATTCTTAGCAATCACAGTGTATTGATTGGcgt
aaatatgtacttgaggcggcGAACCGAACTTTTTGAATAacgaattgtaa
ttttttttgtgacTTGTACCGGCAAAATTCGCCGTTCGCCGGGCCTAAAT
AAGACCCCTTGCTTCTCATAGAGAGGTTGCGTAACTTTAACAAAATATGA
AACACTTTATATTATATCCAGGTGTTCTTTATCGGACGGATTCGATTCGG
GACTGATGTGATgtgatgtgttttttttcttctcaggTGGGACGATGACG
TAGTCTTCAAAAATTGTGCGAAAGATGACGACAAACCAAAGGTTTGAacc
aataaattatttttttatgtttgttaCATTTTGTTTTTTCCGGCCCCTTC
ATCCACTCCGTAGGTTTTTTCCAATGCGCAAATTTCGTGTTTGGTTACGC
ACGTATGTTATTGTACAATTTGAGAACCGCAAATTCTGTTTAGCTCAATT
TCACGAAAAAAGACTTTTGCACCAACTATACTAGCCAAACCAACGGTGAT
ACGTTCGTTGTCTTCGAACAAAAGACTCTGACACAATTCTCTCTTGTGAA
TTTTCCTATCCTAGTGAGAAAGTGACCATTAAGTGACAATTAACAGCCTC
AAGCGAATTtcaattttcgacaaaaaagaGTATCCTGATCAACGGCACTT
GCTTAACCCCTTCTCTTTCTTCCTGGGTTTcaaacattgagtttaaagtc
cgaagggctagagagaatctttaacctttttgAAGCAAGAACAAGATTTG
TCATGTTTTTGACATAgcgctttttttttctttttttttcacgcagcata
ttttTATAAAGTCTGGCGATGGATTTCAATCCGGAGtttgtgaaaaccac
gcggatCAAGCGTTTCAgatgggaaataaatggcttcatttcctatcaaa
gagtttcaactctagccccttcggggttttaaactcaatgttGTTGACGC
CTTCGTGTTATGTTATATATGTCGTTTCTCTGTTTTTTCTCTTAGAATTC
TGGATTCATCAACGACACGATTCGCTCGGAGTTTCACAAAAAGTTCATGG
ACAAATACATCAAATAGTACATATTATGAAAACGACCACAACAATAGTTA
CTCTTTCCAGCCGGGAAAGTCCCAAAATTTGTTCGAAGTTAAGAAAGATA
TGGATCAAATTTTGAGTTTGAGGGTTTATATCGTACAGAGAGACTGGAGA
ACAGTTCAATTCAGCTCTTGGGTTGGGTGAATGATTATGGAACACAGGAT
AACGAACGAACGGGTATAATACCGGAGTTGCCTAAAGACCCATCTAGATC
TGAAAGGGACTACATTGTGTTTTAAtagagactgttcatctaattGCCTT
GGAATGGAACAGGCTATATGGTTTATTTTGTGCTTAGCGACACGGTAAAT
TCATCATTCGTGTACAAAAAGATATTACTGTATATCAAGAAAATAGAAAC
ATTTCTTTTACTACACTACATCATGCACAAGCACTTCTCTCACCTTGCTT
CAATGCGTTCTTTTTACAagaaatatgtttttaaatttttacgtCGAAAA
ACCGTAAGtttcatcttttgttttattcatTTGTCCCTGGTAGGGTTAGA
AAGCCCACCTTTTAACCTACTTGATTATGATTGTCTCACCTGTATCATTT
TGTTGAGAACTTTGATATTGTGAATTTTGCTGTATGTTTTTCTGTTGTTA
ACGGGAATGGGCTCTtcaagagaaaaaattacatttcttttaGGTGGTTC
TAATGCCATTTTTCAGGAGTTGCCCCAGACGTGAGAATTCTGTTTCCCCG
GACATTCGGACAGGACCCGATTCGGGTTTAAACCAATTGGCCTCTTGGCT
GAGAAGAGAACGAGAATAACGGGTGCCCAAGCCATTTTGGCTGGAGTCTT
TAAAGACGGCCGTAGTGTCCATCACACTGACCGATACTAAATGATAACAA
TACACTACTGTGGATCTTACAATGAAAGGACTGGGGTGAGTTTGCGGAAG
TTTCT Coding sequence (CDS) from alignment at scaffold_220:362432..370036+ >TCONS_00052815 ID=TCONS_00052815|Name=TCONS_00052815|organism=Clytia hemisphaerica|type=CDS|length=4194bp|location=Sequence derived from alignment at scaffold_220:362432..370036+ (Clytia hemisphaerica)
ATGACAACGGCCGCTCGACCAACCTTTGATACGGCCCGTGGTGGTCAACA
ACGAGGTGAAGGGAATCTAGCATCACTTACTAAGCAATATTCTGCCAGAG
ATTTACCTTCgcatacaaaaatcaaaactagACAAATCGGACAAGATACA
GCTGAAGAGATCCGTAGCCGTGATTTTAAACACGATTTGATGGAACGTGA
ACGTTCGTCACGTGAGAAAAGCAAGAAAGGTTCATCCAATTCTAGTGATT
ATTCATCATCATCGAAACGACAACGATTGGATTACGATCGGCATTCTTCG
CATCACCACAGTAGCGCGGCCATTGATGCCGATGATCCTGTTGATGATGA
GGATGAGGATGACTCTGATGACGACAGTGACGATGATGACGATACCGCAG
AATTGTTGGCAGAATTGCAACGCATCAAGCGAGATCGTGCTGAAGAAATG
CTCAAACAAGAGCAAGAAAAACGAACAGAAGATGAACGCATTCGAACGGA
GAATCTGATATCGGGCAACCCTCTACTGAACCAAAACCAACAACAAGAAG
GAGACTTCAAAGTCACCAGAAGgTGGGACGATGACGTAGTCTTCAAAAAT
TGTGCGAAAGATGACGACAAACCAAAGAATTCTGGATTCATCAACGACAC
GATTCGCTCGGAGTTTCACAAAAAGTTCATGGACAAATACATCAAATAGA
TGACAACGGCCGCTCGACCAACCTTTGATACGGCCCGTGGTGGTCAACAA
CGAGGTGAAGGGAATCTAGCATCACTTACTAAGCAATATTCTGCCAGAGA
TTTACCTTCgcatacaaaaatcaaaactagACAAATCGGACAAGATACAG
CTGAAGAGATCCGTAGCCGTGATTTTAAACACGATTTGATGGAACGTGAA
CGTTCGTCACGTGAGAAAAGCAAGAAAGGTTCATCCAATTCTAGTGATTA
TTCATCATCATCGAAACGACAACGATTGGATTACGATCGGCATTCTTCGC
ATCACCACAGTAGCGCGGCCATTGATGCCGATGATCCTGTTGATGATGAG
GATGAGGATGACTCTGATGACGACAGTGACGATGATGACGATACCGCAGA
ATTGTTGGCAGAATTGCAACGCATCAAGCGAGATCGTGCTGAAGAAATGC
TCAAACAAGAGCAAGAAAAACGAACAGAAGATGAACGCATTCGAACGGAG
AATCTGATATCGGGCAACCCTCTACTGAACCAAAACCAACAACAAGAAGG
AGACTTCAAAGTCACCAGAAGgTGGGACGATGACGTAGTCTTCAAAAATT
GTGCGAAAGATGACGACAAACCAAAGAATTCTGGATTCATCAACGACACG
ATTCGCTCGGAGTTTCACAAAAAGTTCATGGACAAATACATCAAATAGAT
GACAACGGCCGCTCGACCAACCTTTGATACGGCCCGTGGTGGTCAACAAC
GAGGTGAAGGGAATCTAGCATCACTTACTAAGCAATATTCTGCCAGAGAT
TTACCTTCgcatacaaaaatcaaaactagACAAATCGGACAAGATACAGC
TGAAGAGATCCGTAGCCGTGATTTTAAACACGATTTGATGGAACGTGAAC
GTTCGTCACGTGAGAAAAGCAAGAAAGGTTCATCCAATTCTAGTGATTAT
TCATCATCATCGAAACGACAACGATTGGATTACGATCGGCATTCTTCGCA
TCACCACAGTAGCGCGGCCATTGATGCCGATGATCCTGTTGATGATGAGG
ATGAGGATGACTCTGATGACGACAGTGACGATGATGACGATACCGCAGAA
TTGTTGGCAGAATTGCAACGCATCAAGCGAGATCGTGCTGAAGAAATGCT
CAAACAAGAGCAAGAAAAACGAACAGAAGATGAACGCATTCGAACGGAGA
ATCTGATATCGGGCAACCCTCTACTGAACCAAAACCAACAACAAGAAGGA
GACTTCAAAGTCACCAGAAGgTGGGACGATGACGTAGTCTTCAAAAATTG
TGCGAAAGATGACGACAAACCAAAGAATTCTGGATTCATCAACGACACGA
TTCGCTCGGAGTTTCACAAAAAGTTCATGGACAAATACATCAAATAGATG
ACAACGGCCGCTCGACCAACCTTTGATACGGCCCGTGGTGGTCAACAACG
AGGTGAAGGGAATCTAGCATCACTTACTAAGCAATATTCTGCCAGAGATT
TACCTTCgcatacaaaaatcaaaactagACAAATCGGACAAGATACAGCT
GAAGAGATCCGTAGCCGTGATTTTAAACACGATTTGATGGAACGTGAACG
TTCGTCACGTGAGAAAAGCAAGAAAGGTTCATCCAATTCTAGTGATTATT
CATCATCATCGAAACGACAACGATTGGATTACGATCGGCATTCTTCGCAT
CACCACAGTAGCGCGGCCATTGATGCCGATGATCCTGTTGATGATGAGGA
TGAGGATGACTCTGATGACGACAGTGACGATGATGACGATACCGCAGAAT
TGTTGGCAGAATTGCAACGCATCAAGCGAGATCGTGCTGAAGAAATGCTC
AAACAAGAGCAAGAAAAACGAACAGAAGATGAACGCATTCGAACGGAGAA
TCTGATATCGGGCAACCCTCTACTGAACCAAAACCAACAACAAGAAGGAG
ACTTCAAAGTCACCAGAAGgTGGGACGATGACGTAGTCTTCAAAAATTGT
GCGAAAGATGACGACAAACCAAAGAATTCTGGATTCATCAACGACACGAT
TCGCTCGGAGTTTCACAAAAAGTTCATGGACAAATACATCAAATAGATGA
CAACGGCCGCTCGACCAACCTTTGATACGGCCCGTGGTGGTCAACAACGA
GGTGAAGGGAATCTAGCATCACTTACTAAGCAATATTCTGCCAGAGATTT
ACCTTCgcatacaaaaatcaaaactagACAAATCGGACAAGATACAGCTG
AAGAGATCCGTAGCCGTGATTTTAAACACGATTTGATGGAACGTGAACGT
TCGTCACGTGAGAAAAGCAAGAAAGGTTCATCCAATTCTAGTGATTATTC
ATCATCATCGAAACGACAACGATTGGATTACGATCGGCATTCTTCGCATC
ACCACAGTAGCGCGGCCATTGATGCCGATGATCCTGTTGATGATGAGGAT
GAGGATGACTCTGATGACGACAGTGACGATGATGACGATACCGCAGAATT
GTTGGCAGAATTGCAACGCATCAAGCGAGATCGTGCTGAAGAAATGCTCA
AACAAGAGCAAGAAAAACGAACAGAAGATGAACGCATTCGAACGGAGAAT
CTGATATCGGGCAACCCTCTACTGAACCAAAACCAACAACAAGAAGGAGA
CTTCAAAGTCACCAGAAGgTGGGACGATGACGTAGTCTTCAAAAATTGTG
CGAAAGATGACGACAAACCAAAGAATTCTGGATTCATCAACGACACGATT
CGCTCGGAGTTTCACAAAAAGTTCATGGACAAATACATCAAATAGATGAC
AACGGCCGCTCGACCAACCTTTGATACGGCCCGTGGTGGTCAACAACGAG
GTGAAGGGAATCTAGCATCACTTACTAAGCAATATTCTGCCAGAGATTTA
CCTTCgcatacaaaaatcaaaactagACAAATCGGACAAGATACAGCTGA
AGAGATCCGTAGCCGTGATTTTAAACACGATTTGATGGAACGTGAACGTT
CGTCACGTGAGAAAAGCAAGAAAGGTTCATCCAATTCTAGTGATTATTCA
TCATCATCGAAACGACAACGATTGGATTACGATCGGCATTCTTCGCATCA
CCACAGTAGCGCGGCCATTGATGCCGATGATCCTGTTGATGATGAGGATG
AGGATGACTCTGATGACGACAGTGACGATGATGACGATACCGCAGAATTG
TTGGCAGAATTGCAACGCATCAAGCGAGATCGTGCTGAAGAAATGCTCAA
ACAAGAGCAAGAAAAACGAACAGAAGATGAACGCATTCGAACGGAGAATC
TGATATCGGGCAACCCTCTACTGAACCAAAACCAACAACAAGAAGGAGAC
TTCAAAGTCACCAGAAGgTGGGACGATGACGTAGTCTTCAAAAATTGTGC
GAAAGATGACGACAAACCAAAGAATTCTGGATTCATCAACGACACGATTC
GCTCGGAGTTTCACAAAAAGTTCATGGACAAATACATCAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052815-exon-scaffold_220-1491911889:362432..362630 | TCONS_00052815-exon-scaffold_220-1491911889:362432..362630 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1510915933:362432..362630 | TCONS_00052815-exon-scaffold_220-1510915933:362432..362630 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1575043694:362432..362630 | TCONS_00052815-exon-scaffold_220-1575043694:362432..362630 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1491911889:363045..363290 | TCONS_00052815-exon-scaffold_220-1491911889:363045..363290 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1510915933:363045..363290 | TCONS_00052815-exon-scaffold_220-1510915933:363045..363290 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1575043694:363045..363290 | TCONS_00052815-exon-scaffold_220-1575043694:363045..363290 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1491911889:367547..367628 | TCONS_00052815-exon-scaffold_220-1491911889:367547..367628 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1510915933:367547..367628 | TCONS_00052815-exon-scaffold_220-1510915933:367547..367628 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1575043694:367547..367628 | TCONS_00052815-exon-scaffold_220-1575043694:367547..367628 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1491911889:367791..367903 | TCONS_00052815-exon-scaffold_220-1491911889:367791..367903 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1510915933:367791..367903 | TCONS_00052815-exon-scaffold_220-1510915933:367791..367903 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1575043694:367791..367903 | TCONS_00052815-exon-scaffold_220-1575043694:367791..367903 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1491911889:368268..368322 | TCONS_00052815-exon-scaffold_220-1491911889:368268..368322 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1510915933:368268..368322 | TCONS_00052815-exon-scaffold_220-1510915933:368268..368322 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1575043694:368268..368322 | TCONS_00052815-exon-scaffold_220-1575043694:368268..368322 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1491911889:369027..369584 | TCONS_00052815-exon-scaffold_220-1491911889:369027..369584 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1510915933:369027..369584 | TCONS_00052815-exon-scaffold_220-1510915933:369027..369584 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1575043694:369027..369584 | TCONS_00052815-exon-scaffold_220-1575043694:369027..369584 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1491911889:369775..370036 | TCONS_00052815-exon-scaffold_220-1491911889:369775..370036 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1510915933:369775..370036 | TCONS_00052815-exon-scaffold_220-1510915933:369775..370036 | Clytia hemisphaerica | exon |
| TCONS_00052815-exon-scaffold_220-1575043694:369775..370036 | TCONS_00052815-exon-scaffold_220-1575043694:369775..370036 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:362432..370036 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006973 | Cwf_Cwc_15 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005681 | spliceosomal complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000398 | mRNA splicing, via spliceosome |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0000398 |
mRNA splicing, via spliceosome |
| cellular_component |
GO:0005681 |
spliceosomal complex |
Blast
BLAST of TCONS_00052815 vs. Swiss-Prot (Human)
Match: CWC15 (Spliceosome-associated protein CWC15 homolog OS=Homo sapiens GN=CWC15 PE=1 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 5.289e-32 Identity = 66/101 (65.35%), Postives = 84/101 (83.17%), Query Frame = 3
Query: 471 LLAELQRIKRDRAEEMLKQEQEKRTEDERIRTENLISGNPLLNQN--QQQEGDFKVTRRWDDDVVFKNCAKD-DDKPKNSGFINDTIRSEFHKKFMDKYIK 764
LLAEL++IK++RAEE ++EQE++ E+ERIR EN++SGNPLLN Q + +FKV RRWDDDVVFKNCAK DD+ K+ F+NDT+RSEFHKKFM+KYIK
Sbjct: 129 LLAELEKIKKERAEEQARKEQEQKAEEERIRMENILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 229 HSP 2 Score: 93.5893 bits (231), Expect = 2.219e-21 Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 3
Query: 69 MTTAARPTFDTARGGQQRGEGNLASLTKQYSARDLPSHTKIKTRQIGQDTAEEIRSRDF 245
MTTAARPTF+ ARGG+ +GEG+L+ L+KQYS+RDLPSHTKIK RQ QD EE+R+RDF
Sbjct: 1 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDF 59
The following BLAST results are available for this feature:
|
