TCONS_00052957 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052957
Unique NameTCONS_00052957
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052957 ID=TCONS_00052957|Name=TCONS_00052957|organism=Clytia hemisphaerica|type=transcript|length=828bp
ttatagataaattcgaatttcctacTAAAAAGCTATCAATTGGTGAGATA
TTAGACAGTCAAAGAATACAAAGAAAGGTCTTTGGAGGCGTATCATCTTC
TACAATGAAAAACTTTTGGTTATTCGTTACGACATTGTGTATACTTCTTC
TGTTTACACCAGTTGTTCAAGGCGAAGTCCGTATTTCATCGAGTACGGAA
GCTCCCTTTGAAGGAAGTTCCGTTATCCTAACATGTAATTCATCAAACAT
CACAACAACAGAATCATGGACTTTTTATCGAAATAATGTAGCTATAGCAA
CTGTCAATCAATCGAATTATGAAGTCAAACCTTTTGAATCTGCCTCATTT
TCGTGTGAAGTTAATGGGACTCGTTCAGTCAACACAGTTCGTCTTGATGT
CAAAGAACTTTTCACGATTCCACTTTTGATTATCAACCAACAAACCATTG
AAAGTGGTTCACCATTAACATTACAATGTAATACAACAAACCATTCAAAC
GAAACACTCATGTTCACATTTTTTAAAGACAATGAACAGattaaccaatc
aaatcaaaGCAATCTCATGATCGAACgaatttcaaccaatcagaaaggAA
TATACATGTGTAACGTGACGATTGGTTCGATCGTAAAGACATCTAACAAA
GTTAATGTAGAAGTCATTCTTCCTGTATCAATACAAACTGAACAAACATT
CGAAGGTTTCAATACGACACTAATATGCAACACACCAAACCATGAAACGA
ATCTTTCCTATAAATGGTTTGCCAATAATAACCAACAATCATCAACTGAA
AAGACTCTGGTGTTACCAAAGGTTCTGG
Run BLAST on NCBI

protein sequence of TCONS_00052957-protein

>TCONS_00052957-protein ID=TCONS_00052957-protein|Name=TCONS_00052957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
IDKFEFPTKKLSIGEILDSQRIQRKVFGGVSSSTMKNFWLFVTTLCILLL
FTPVVQGEVRISSSTEAPFEGSSVILTCNSSNITTTESWTFYRNNVAIAT
VNQSNYEVKPFESASFSCEVNGTRSVNTVRLDVKELFTIPLLIINQQTIE
SGSPLTLQCNTTNHSNETLMFTFFKDNEQINQSNQSNLMIERISTNQKGI
YMCNVTIGSIVKTSNKVNVEVILPVSIQTEQTFEGFNTTLICNTPNHETN
LSYKWFANNNQQSSTEKTLVLPKVL
Run BLAST on NCBI

transcript from alignment at scaffold_222:189754..192365-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052957 ID=TCONS_00052957|Name=TCONS_00052957|organism=Clytia hemisphaerica|type=transcript|length=2612bp|location=Sequence derived from alignment at scaffold_222:189754..192365- (Clytia hemisphaerica)
TTATAGATAAATTCGAATTTCCTACTAAAAAGCTATCAATTGGTGAGATA
TTAGACAGTCAAAGAATACAAAGAAAGGTCTTTGGAGGCGTATCATCTTC
TACAATGAAAAACTTTTGGTTATTCGTTACGACATTGTGTATACTTCTTC
TGTTTACACCAGGTATGCTTTATAACCAAGCTGGCACACAATGTCATAAC
AACGTCCATCTGACGTCCCTAACGTCCGTGTAACGTTAGATGAACGTTAA
ACCAACCTTGCGTGTCAGCTAGAAATTAACAATACTACGTCTTTGAGAAG
TTTATTTTTCAGCCGTCACAGAACTCGACACAGAACGTCAAAACAACGTC
CATCTGACGTCCTTAACGTTCATATAACGTTAGGTGAACGTTGAAACAAT
GTTGTGTGCTATGCCAGCTGGGGAGCTGAGAAGCTTTTTGATTTTTAGGG
TACGGAATGCAAAAACCCCGTACTTTATCTACCATCTTTGATCGAAGAAA
AGTGATTCCCTAATTGTTCCTCTACTTGATTAAAGTGGGTCTATTTCTAA
TTCCTGCAATGTTACTGTTCCCGTTTGAAAATATTTTCGCCCGCATCGCT
TCAGTGGTACAATTAGGGAGATCTTTTTTAGACTAGAACTTATTTGAAAT
CTTCGATCTTGGCGCTCCACCTCGACATTCGATCTCCTAGATCTTGTGCT
AATAGAAAAGGAGATATACTCCCTTACTCCCGGCTATACCTTATGAAACA
TATTGTAAGACAACCTTTCTAAAATACTAATCTTCGCTTGTTTTCAGTTG
TTCAAGGCGAAGTCCGTATTTCATCGAGTACGGAAGCTCCCTTTGAAGGA
AGTTCCGTTATCCTAACATGTAATTCATCAAACATCACAACAACAGAATC
ATGGACTTTTTATCGAAATAATGTAGCTATAGCAACTGTCAATCAATCGA
ATTATGAAGTCAAACCTTTTGAATCTGCCTCATTTTCGTGTGAAGTTAAT
GGGACTCGTTCAGTCAACACAGTTCGTCTTGATGTCAAAGGTATGTATTG
ACGTAAGGTGTTTAGCCTGAATCTTCACTGTCTTTGCTCCGAATCTATAT
AACTGTTATGGTCACATTGAGTATGTTTGATTTGACTTTTTACATGACTC
GATCTTAAGAATGAAATGGTCCTATCCTAAAAAAACGCGATTTGGAAATT
TTTCGGTTTTAAATTTTCAAGTTATTATAATAGTGACTTGTGTTTGTGTA
ATAGCTTTCGAGTTTAAGTTTTTAAATATAAAACAGACGTATGATTAAAC
CATATTTATAAAGTTTTTTATCAAATTTGGTAGATCGGTTCTCTTTCAAG
TTGAGCCTCTTTTTTGACCTAGAACCTTTTTTCCTAGATCATAAATCTCA
GGTAAAAGCTGAACTGATATTTTTCTAGTCTGTGATACGGGGGTTTTAAT
ACGTTATAATTAATGCAAAAAACAATCTTGTACCCAGAGACCTTTGCACG
ACTTTTGGACGTTGGTATACTTTTCGTTAACGCTATCAGAATCATCAAAA
AAGGATCTAAAGGACTAGGTTCGAGTTTGTGCAAGCATATGAAGAAACAA
TGGATTGTATTTTTTCAACATTCTTTTTCTAGAACTTTTCACGATTCCAC
TTTTGATTATCAACCAACAAACCATTGAAAGTGGTTCACCATTAACATTA
CAATGTAATACAACAAACCATTCAAACGAAACACTCATGTTCACATTTTT
TAAAGACAATGAACAGATTAACCAATCAAATCAAAGCAATCTCATGATCG
AACGAATTTCAACCAATCAGAAAGGAATATACATGTGTAACGTGACGATT
GGTTCGATCGTAAAGACATCTAACAAAGTTAATGTAGAAGGTACAGTAAA
GGGTTTTAGGTTTAGACGGACTTTTTTATACCGGAAAAGCCATGGGAATT
AGGGAAATGGATCAAAATGCAAGATTGTCCGACGGTACTGAGTTTGCCAG
CTGACGGGTATGTCCGGGTATCGTTTATCGTTTCGTAGTACACTCTATGC
GCATTGTCTGTTTGATAAAAAAATTCCCGGACGGAAACCTCTGCGATGAA
TTATAAATAGAAACACTTCACCCGCACTCCATCGCAGCGGTCGGTTTGAA
AAATCTCAAATCAGAGGCAATGAAATTTGAATTTAGACGTCGATATCGGG
TCTGTGTACAGACTAGGTATGTCTGAGCCAAAGTTCGAAAATCGACCTTT
GGCATGAGAGACTATTTTCCAAATTTTCAGTAAAACTTTTGCAAATTCAG
AAAATTTATGACCTGACTTCTTTAATAATTTTTGTAGCTCTGTAAGAGAC
TTTTGTAGGTGTGACCCTCATGGCTCGCACATAGCCGACACCAGTTTTGC
TTTTGTACCCCAGGGCAAGATTGATATATAAAAATCTCTTTTTTCAGTCA
TTCTTCCTGTATCAATACAAACTGAACAAACATTCGAAGGTTTCAATACG
ACACTAATATGCAACACACCAAACCATGAAACGAATCTTTCCTATAAATG
GTTTGCCAATAATAACCAACAATCATCAACTGAAAAGACTCTGGTGTTAC
CAAAGGTTCTGG

Coding sequence (CDS) from alignment at scaffold_222:189754..192365-

>TCONS_00052957 ID=TCONS_00052957|Name=TCONS_00052957|organism=Clytia hemisphaerica|type=CDS|length=3300bp|location=Sequence derived from alignment at scaffold_222:189754..192365- (Clytia hemisphaerica)
TCATTCTTCCTGTATCAATACAAACTGAACAAACATTCGAAGGTTTCAAT
ACGACACTAATATGCAACACACCAAACCATGAAACGAATCTTTCCTATAA
ATGGTTTGCCAATAATAACCAACAATCATCAACTGAAAAGACTCTGGTGT
TACCAAAGGTTCTGAACTTTTCACGATTCCACTTTTGATTATCAACCAAC
AAACCATTGAAAGTGGTTCACCATTAACATTACAATGTAATACAACAAAC
CATTCAAACGAAACACTCATGTTCACATTTTTTAAAGACAATGAACAGAT
TAACCAATCAAATCAAAGCAATCTCATGATCGAACGAATTTCAACCAATC
AGAAAGGAATATACATGTGTAACGTGACGATTGGTTCGATCGTAAAGACA
TCTAACAAAGTTAATGTAGAAGTTGTTCAAGGCGAAGTCCGTATTTCATC
GAGTACGGAAGCTCCCTTTGAAGGAAGTTCCGTTATCCTAACATGTAATT
CATCAAACATCACAACAACAGAATCATGGACTTTTTATCGAAATAATGTA
GCTATAGCAACTGTCAATCAATCGAATTATGAAGTCAAACCTTTTGAATC
TGCCTCATTTTCGTGTGAAGTTAATGGGACTCGTTCAGTCAACACAGTTC
GTCTTGATGTCAAAGATAGATAAATTCGAATTTCCTACTAAAAAGCTATC
AATTGGTGAGATATTAGACAGTCAAAGAATACAAAGAAAGGTCTTTGGAG
GCGTATCATCTTCTACAATGAAAAACTTTTGGTTATTCGTTACGACATTG
TGTATACTTCTTCTGTTTACACCAGTCATTCTTCCTGTATCAATACAAAC
TGAACAAACATTCGAAGGTTTCAATACGACACTAATATGCAACACACCAA
ACCATGAAACGAATCTTTCCTATAAATGGTTTGCCAATAATAACCAACAA
TCATCAACTGAAAAGACTCTGGTGTTACCAAAGGTTCTGAACTTTTCACG
ATTCCACTTTTGATTATCAACCAACAAACCATTGAAAGTGGTTCACCATT
AACATTACAATGTAATACAACAAACCATTCAAACGAAACACTCATGTTCA
CATTTTTTAAAGACAATGAACAGATTAACCAATCAAATCAAAGCAATCTC
ATGATCGAACGAATTTCAACCAATCAGAAAGGAATATACATGTGTAACGT
GACGATTGGTTCGATCGTAAAGACATCTAACAAAGTTAATGTAGAAGTTG
TTCAAGGCGAAGTCCGTATTTCATCGAGTACGGAAGCTCCCTTTGAAGGA
AGTTCCGTTATCCTAACATGTAATTCATCAAACATCACAACAACAGAATC
ATGGACTTTTTATCGAAATAATGTAGCTATAGCAACTGTCAATCAATCGA
ATTATGAAGTCAAACCTTTTGAATCTGCCTCATTTTCGTGTGAAGTTAAT
GGGACTCGTTCAGTCAACACAGTTCGTCTTGATGTCAAAGATAGATAAAT
TCGAATTTCCTACTAAAAAGCTATCAATTGGTGAGATATTAGACAGTCAA
AGAATACAAAGAAAGGTCTTTGGAGGCGTATCATCTTCTACAATGAAAAA
CTTTTGGTTATTCGTTACGACATTGTGTATACTTCTTCTGTTTACACCAG
TCATTCTTCCTGTATCAATACAAACTGAACAAACATTCGAAGGTTTCAAT
ACGACACTAATATGCAACACACCAAACCATGAAACGAATCTTTCCTATAA
ATGGTTTGCCAATAATAACCAACAATCATCAACTGAAAAGACTCTGGTGT
TACCAAAGGTTCTGAACTTTTCACGATTCCACTTTTGATTATCAACCAAC
AAACCATTGAAAGTGGTTCACCATTAACATTACAATGTAATACAACAAAC
CATTCAAACGAAACACTCATGTTCACATTTTTTAAAGACAATGAACAGAT
TAACCAATCAAATCAAAGCAATCTCATGATCGAACGAATTTCAACCAATC
AGAAAGGAATATACATGTGTAACGTGACGATTGGTTCGATCGTAAAGACA
TCTAACAAAGTTAATGTAGAAGTTGTTCAAGGCGAAGTCCGTATTTCATC
GAGTACGGAAGCTCCCTTTGAAGGAAGTTCCGTTATCCTAACATGTAATT
CATCAAACATCACAACAACAGAATCATGGACTTTTTATCGAAATAATGTA
GCTATAGCAACTGTCAATCAATCGAATTATGAAGTCAAACCTTTTGAATC
TGCCTCATTTTCGTGTGAAGTTAATGGGACTCGTTCAGTCAACACAGTTC
GTCTTGATGTCAAAGATAGATAAATTCGAATTTCCTACTAAAAAGCTATC
AATTGGTGAGATATTAGACAGTCAAAGAATACAAAGAAAGGTCTTTGGAG
GCGTATCATCTTCTACAATGAAAAACTTTTGGTTATTCGTTACGACATTG
TGTATACTTCTTCTGTTTACACCAGTCATTCTTCCTGTATCAATACAAAC
TGAACAAACATTCGAAGGTTTCAATACGACACTAATATGCAACACACCAA
ACCATGAAACGAATCTTTCCTATAAATGGTTTGCCAATAATAACCAACAA
TCATCAACTGAAAAGACTCTGGTGTTACCAAAGGTTCTGAACTTTTCACG
ATTCCACTTTTGATTATCAACCAACAAACCATTGAAAGTGGTTCACCATT
AACATTACAATGTAATACAACAAACCATTCAAACGAAACACTCATGTTCA
CATTTTTTAAAGACAATGAACAGATTAACCAATCAAATCAAAGCAATCTC
ATGATCGAACGAATTTCAACCAATCAGAAAGGAATATACATGTGTAACGT
GACGATTGGTTCGATCGTAAAGACATCTAACAAAGTTAATGTAGAAGTTG
TTCAAGGCGAAGTCCGTATTTCATCGAGTACGGAAGCTCCCTTTGAAGGA
AGTTCCGTTATCCTAACATGTAATTCATCAAACATCACAACAACAGAATC
ATGGACTTTTTATCGAAATAATGTAGCTATAGCAACTGTCAATCAATCGA
ATTATGAAGTCAAACCTTTTGAATCTGCCTCATTTTCGTGTGAAGTTAAT
GGGACTCGTTCAGTCAACACAGTTCGTCTTGATGTCAAAGATAGATAAAT
TCGAATTTCCTACTAAAAAGCTATCAATTGGTGAGATATTAGACAGTCAA
AGAATACAAAGAAAGGTCTTTGGAGGCGTATCATCTTCTACAATGAAAAA
CTTTTGGTTATTCGTTACGACATTGTGTATACTTCTTCTGTTTACACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033442XLOC_033442Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052957-exon-scaffold_222-1575043694:192204..192365TCONS_00052957-exon-scaffold_222-1575043694:192204..192365Clytia hemisphaericaexon
TCONS_00052957-exon-scaffold_222-1575043694:191326..191568TCONS_00052957-exon-scaffold_222-1575043694:191326..191568Clytia hemisphaericaexon
TCONS_00052957-exon-scaffold_222-1575043694:190476..190733TCONS_00052957-exon-scaffold_222-1575043694:190476..190733Clytia hemisphaericaexon
TCONS_00052957-exon-scaffold_222-1575043694:189754..189918TCONS_00052957-exon-scaffold_222-1575043694:189754..189918Clytia hemisphaericaexon
TCONS_00052957-exon-scaffold_222-1510915933:192204..192365TCONS_00052957-exon-scaffold_222-1510915933:192204..192365Clytia hemisphaericaexon
TCONS_00052957-exon-scaffold_222-1510915933:191326..191568TCONS_00052957-exon-scaffold_222-1510915933:191326..191568Clytia hemisphaericaexon
TCONS_00052957-exon-scaffold_222-1510915933:190476..190733TCONS_00052957-exon-scaffold_222-1510915933:190476..190733Clytia hemisphaericaexon
TCONS_00052957-exon-scaffold_222-1510915933:189754..189918TCONS_00052957-exon-scaffold_222-1510915933:189754..189918Clytia hemisphaericaexon
TCONS_00052957-exon-scaffold_222-1491911889:192204..192365TCONS_00052957-exon-scaffold_222-1491911889:192204..192365Clytia hemisphaericaexon
TCONS_00052957-exon-scaffold_222-1491911889:191326..191568TCONS_00052957-exon-scaffold_222-1491911889:191326..191568Clytia hemisphaericaexon
TCONS_00052957-exon-scaffold_222-1491911889:190476..190733TCONS_00052957-exon-scaffold_222-1491911889:190476..190733Clytia hemisphaericaexon
TCONS_00052957-exon-scaffold_222-1491911889:189754..189918TCONS_00052957-exon-scaffold_222-1491911889:189754..189918Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052957-proteinTCONS_00052957-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:189754..192365 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.74509	0.894252	0.129789	0.317446	16.6951	9.46696	10.6109	11.1066	3.57405	4.12791	5.45833	2.36662	3.20192	3.95861	2.6687	3.07348	0.860517	0.617402	1.21853	1.97642	0.166245	0.0810885	0.78859	1.07541	1.78455	2.14186	6.8373	6.96146	0.254459	0.259253
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003599Ig_sub
IPR007110Ig-like_dom
IPR013783Ig-like_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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