TCONS_00053347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053347
Unique NameTCONS_00053347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053347 ID=TCONS_00053347|Name=TCONS_00053347|organism=Clytia hemisphaerica|type=transcript|length=1604bp
AAGTTGTCTGCAATCTTTCTTTGATCTGTGTCACTATATTTACTGTTAGT
GGTTTGAGAAAGATATGGAGAAACTACCTTGGTTATTAGTTCTCTGTTTT
GGCTGTCTTTCTGTCTTTAATTTTCTAAGATATCTGGAAGTGGACTCTCG
ATTTAACAGATTGGAGTTAGAAAATTGGAATGTGGTAAAAGACAGATCTC
GACGTGATGCTCCAAAGATGCTGGATGAAAATGTACAAAACATTTTATCA
AGTATTGAAACCTTAACTGATTTCGTTCAAAAGCAATCGAATGAAACATT
CAATGGAGAAATCAATCAAGCTTTGGAAAAATTCTTCATGCAATTCCCTA
CGAAAAACATTTGTAAACAATTCGTAACCCAGTGTGGCTGTAAAGaaaaa
tgcaccACTATTGACAAGGATTCCAGCGATGTAAAATCAACAGCTAAATT
CATTCGTGGACCACCGGGTCCTCCAGGACCAAGAGGATTAAGCCTAGAAC
CACCACGATTGATCAAAAGCTCACTTGATGACCGAATTGTTAATCTAACT
GATTCAACAACATTCGAATGTTCTTTTTCTGGAAACCCATTGCCTGAAAT
TTCTTGGAAAAGTTCAGCTAAAAACGCTAAAACCATCACTTGGAAGAATA
AAGAAAACCTTGAAGTTTCAAGTCGAATGATCATCTCAAATATTTCATGG
AGCGATCAAGGACCGATCGAATGCCGTGCGAAGAGCTTGCTCGGAGAAGT
TAGTGTTTCAGGAAATCTTCACACATTGTCTCACCCAGTCATAAATACCA
CAAAAGCATTGGTTTTTGCACCACAAGGAGTTGATTTCCACTTCCCTTTG
TGTCAAGTACGATCCAATCCACCTGCCAAAATTACATGGAAAAGAATATT
CTGGTCATTACCAGCCGGTCGCTTTCATATCCGAGAAAaagagttgctta
taaaagatgtaCGATATTCAGATGAAGGGTTCTATGTCTGTGAAGCTGAA
AACATGCTTGGTAAAGCTCAAATGACAGTCCAATTGAAAATACGTTCGTT
GGAATTGCAATCGTCCTCACCTTCATTCATCCAAACTACAAAAAATGTTA
CATCCATCGAATGTTCAGcatacggaaacacccgaatAATGACCGGGACT
ATCACGAGATCCGGAATGCCAATCCCTTCCGTGAGCGAATCTATAAAGGC
CAATTTATTAAATGTGAAAGCTGTAGTATCTGAGAATGGAACATATCTTT
GTACTGTCCGAAGTGGAAGTGAAAAGGTTAACAGTGCAACTGTGGTTAAG
ATTTTACCTCCCGAGAAAACAGAAAAGACAAATCTGAACCCAGAAACCTC
CTTACCCTCGATCATAGCTCTAGCTGGTGACGTTGTCAATATCAGTTGTT
TTGCATACGGGAATACTCAATATATGAACGGGACGATCACAAATGCGGAT
GTACCGGTACAGAATGTTACCATCATAACGAAAGATGATTTATTTTTGGT
GAAGGCACTGGTGGTTGATGACGGAACTTTTGTTTGTACCATCCGGAATG
AGACAGATGATAAAGTTATTGTTGAGAATATTTCACGCGTCATATTCTTG
CCTT
Run BLAST on NCBI

transcript from alignment at scaffold_228:701500..705727-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053347 ID=TCONS_00053347|Name=TCONS_00053347|organism=Clytia hemisphaerica|type=transcript|length=4228bp|location=Sequence derived from alignment at scaffold_228:701500..705727- (Clytia hemisphaerica)
AAGTTGTCTGCAATCTTTCTTTGATCTGTGTCACTATATTTACTGTTAGT
GGTTTGAGAAAGATATGGAGAAACTACCTTGGTTATTAGTTCTCTGTTTT
GGCTGTCTTTCTGTCTTTAATTTTCTAAGATATCTGGAAGTGGACTCTCG
ATTTAACAGATTGGAGTTAGAAAATTGGAGTAAGGGTATGTCAGTTCACA
TCGTTTTTCTCTGCGTTTGATAGATCTTTAGATAGACTTGTTAAATGTTT
AAAAATATTTTTAATTGACTAAATTTAGAACTTCTGTTTCACAAACCCGC
TGGGACCCCCAGGGGGGGGGGGGGCTTTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
CCACTAAGGGTCGGAGAAATAGGAAAATTTCAACTTTTTACCCCCGGAAA
GATCGAATTTGGTTAAAAATAGGTCAAATTAGTCCCAATAAGAGTCGTAA
AATTCACAAAATTTTCCTTTCTTTTCTTCTTTTTAGTCCCGGTAAGGGTC
CAAAGGTTGAAAGTCGGGCAGCACCCCCCGTCAGTTCGCAATCCTAGTAC
CCCCAGGCTGGGACCCCATCCAGCATGACTTTGTTTGTATCCCCATCAAA
CCCATCATCTCAAAAATTTGCACTCCAAAAACAATAAAGTATAAGCCCAA
AGGGCTAGAAGCGAATCGGATTTGAAGCCACTGAATCCTACCTAAGTTAC
ACGGCCTTCCGGATTGAAAATAAAATTTTACACTAGATTAAAAAAAAAAC
ACTCGAAAACAAAGAAACTGCTAAATTCAATCCGTCGTCAAAAAATACGG
CGTACATTCTGAGGCTTCACTTTTTCTTGCCTGAGAAAGGTTGAAGATTC
GCATCTAGCCCTTTGAGATTATACTTCATTACTCCAAAATTATCCCGCTG
GATTTTTCGACCTGAGAATAATAGAACTTCTATACCCTTTAGAATTATGA
TAAAAGATTTTCATTCCCACTAGTGGGAAAATTTCAACCGGGGCTACGAG
ACAAGGGTGTAAAACAGTAGGTCTCCTTTACAGAGCACGAAACGGGAACG
CAAATTTCATTTATGCATTAATGAAATAGATGATGAATTTGTGGTCCACT
CGTGGTCCACTTAGCTTTTTTGGTCGAATACTCTAAAAAGCATTGAATAG
TCTTTTTTAATTTTTAAATCTCTCCTTTTGTAGATGTGGTAAAAGACAGA
TCTCGACGTGATGCTCCAAAGATGCTGGATGAAAATGTACAAAACATTTT
ATCAAGTATTGAAACCTTAACTGATTTCGTTCAAAAGCAATCGAATGAAA
CATTCAATGGAGAAATCAATCAAGCTTTGGAAAAATTCTTCATGCAATTC
CCTACGAAAAACATTTGTAAACAATTCGTAACCCAGTGTGGCTGTAAAGG
TATTATTGAGTTGTTAGTAATTTAAATTCTGAGGATAGAAATATTATATT
TAATTCAACTAACCGGTTTGAAATATTTTCAGTGAAAAATCTAAATCTCT
GAGTTCGTCTGTGCATATCCAGGGATATGTTATAATAGCGGAGCGTATTT
CCCTATTAGGCATCTCACTTTACATACATAACAAGCATTGGTTTTGTTTA
CGCCCAAACAAGAAAGCAATTGTGATATCATAAATTTCAATATTTTATTT
TAGAAAAATGCACCACTATTGACAAGGATTCCAGCGATGTAAAATCAACA
GCTAAATTCATTCGTGGACCACCGGTAGGTAAAATATATTTTCCAATTTC
TGTCAGTAAACAATTCTCATGCACTCTTGGAAAAGGAGCTTTTGACTCAG
ACTTAGAGTAATGACTTATTTATTTCGGTTTCAGGGTCCTCCAGGACCAA
GAGGATTAAGCCTAGAACCACCACGATTGATCAAAAGCTCACTTGATGAC
CGAATTGTTAATCTAACTGATTCAACAACATTCGAATGTTCTTTTTCTGG
AAACCCATTGCCTGAAATTTCTTGGAAAAGTTCAGCTAAAAACGCTAAAA
CCATCACTTGGAAGAATAAAGAAAACCTTGAAGTTTCAAGTCGAATGATC
ATCTCAAATATTTCATGGAGCGATCAAGGACCGATCGAATGCCGTGCGAA
GAGCTTGCTCGGAGAAGTTAGTGTTTCAGGAAATCTTCACACATTGTGTA
AGAATTTATCGAAGTCATTTTTATTCTAAAAATTTTTGTTCCCTCTTTCC
AACTGGTAAAATAATCTCCTGACCTGACTCTCAACTAACATAGGGTTCGC
TTTTTGCATGTTCTTAACAGTCGTGTCATTATTCTTCTTTGTAGCTCACC
CAGTCATAAATACCACAAAAGCATTGGTTTTTGCACCACAAGGAGTTGAT
TTCCACTTCCCTTTGTGTCAAGTACGATCCAATCCACCTGCCAAAATTAC
ATGGAAAAGAATATTCTGGTCATTACCAGCCGGTCGCTTTCATATCCGAG
AAAAAGAGTTGCTTATAAAAGATGTACGATATTCAGATGAAGGGTTCTAT
GTCTGTGAAGCTGAAAACATGCTTGGTAAGAACGTTGCTTTATTCCTCAA
AACTATATAAAATGTAGAACTTCAGTACACCTCTGTGTCAAACACCCGTT
GGGACCCCCGCGAATAAAAAATTCGGCTGAAATTTTGCCCCAGTTGGAAA
TTTACCCCACAATTTCAGTCCCGTTGGAAAATTAACTTTGTTTTTATTCC
CATTTGAAATTCAATAGGAAAAACCCACTATGGGGGAAGTTCCATTGCTG
GGGCTGCAAGACAGAGTTGTTTTAATGTCACTGGGTCTTTAAATATGTAG
ATGTGCTTTATGGCTCTAAGTGACTCCAACTCTTGCCGCAACAACAAGTC
ATTGTTTTAAAATGTCGCAGGGTGTATTGAATGTTTGATCTCTGACTTCT
GTTTGTCTGTTTCCTTTCAAAGGTAAAGCTCAAATGACAGTCCAATTGAA
AATACGTTCGTTGGAATTGCAATCGTCCTCACCTTCATTCATCCAAACTA
CAAAAAATGTTACATCCATCGAATGTTCAGCATACGGAAACACCCGAATA
ATGACCGGGACTATCACGAGATCCGGAATGCCAATCCCTTCCGTGAGCGA
ATCTATAAAGGCCAATTTATTAAATGTGAAAGCTGTAGTATCTGAGAATG
GAACATATCTTTGTACTGTCCGAAGTGGAAGTGAAAAGGTTAACAGTGCA
ACTGTGGTTAAGATTTTACGTAACTTCTTATTTGGTTTTATTTCATTTCT
ATATGTTCCCATTACACTCGTTTATGCAAAGAAATTTCATTTTTAATTTC
ATGCCTTACGGGTCACTCTTTTGAAATGATGCATTATGTTTTATTTACGT
CATCTGGAAAAGATTCTACCTTAAAATGTGTACGAACCCTTAGAGGGGGT
TTCAGGGGGTATCCGATTCCACAATTCCGCACTTCTGCAAAATTTTTTGC
TAAATTCTGTTTTTCTGCACTAAAATTGTCTAATTTTCCGTCTCCGTCGG
AGAACCCAATTTCCGTAATTCCGTCTAAATTTTCGCCAAATTCCGCCACT
CCGTCCGAACAAAGGGCTGATTCCGCTCCTCCGCCAACCATGAAACCCCC
CTACATAGGAGAAGCCTTATCTAGAAGAGGGGATTATTGAAAATATAAAG
CCAGGGCATTGGAGGAGGGAAGGTGGCCCCAAGCCTTGCGTAGAATCTAT
AAAAATATCAGCTATCTTACAACTATTTCAGCTCCCGAGAAAACAGAAAA
GACAAATCTGAACCCAGAAACCTCCTTACCCTCGATCATAGCTCTAGCTG
GTGACGTTGTCAATATCAGTTGTTTTGCATACGGGAATACTCAATATATG
AACGGGACGATCACAAATGCGGATGTACCGGTACAGAATGTTACCATCAT
AACGAAAGATGATTTATTTTTGGTGAAGGCACTGGTGGTTGATGACGGAA
CTTTTGTTTGTACCATCCGGAATGAGACAGATGATAAAGTTATTGTTGAG
AATATTTCACGCGTCATATTCTTGCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033663XLOC_033663Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053347-exon-scaffold_228-1575043694:705549..705727TCONS_00053347-exon-scaffold_228-1575043694:705549..705727Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1575043694:704129..704344TCONS_00053347-exon-scaffold_228-1575043694:704129..704344Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1575043694:703804..703874TCONS_00053347-exon-scaffold_228-1575043694:703804..703874Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1575043694:703381..703693TCONS_00053347-exon-scaffold_228-1575043694:703381..703693Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1575043694:703003..703233TCONS_00053347-exon-scaffold_228-1575043694:703003..703233Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1575043694:702309..702605TCONS_00053347-exon-scaffold_228-1575043694:702309..702605Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1575043694:701500..701796TCONS_00053347-exon-scaffold_228-1575043694:701500..701796Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1510915933:705549..705727TCONS_00053347-exon-scaffold_228-1510915933:705549..705727Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1510915933:704129..704344TCONS_00053347-exon-scaffold_228-1510915933:704129..704344Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1510915933:703804..703874TCONS_00053347-exon-scaffold_228-1510915933:703804..703874Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1510915933:703381..703693TCONS_00053347-exon-scaffold_228-1510915933:703381..703693Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1510915933:703003..703233TCONS_00053347-exon-scaffold_228-1510915933:703003..703233Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1510915933:702309..702605TCONS_00053347-exon-scaffold_228-1510915933:702309..702605Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1510915933:701500..701796TCONS_00053347-exon-scaffold_228-1510915933:701500..701796Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1491911889:705549..705727TCONS_00053347-exon-scaffold_228-1491911889:705549..705727Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1491911889:704129..704344TCONS_00053347-exon-scaffold_228-1491911889:704129..704344Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1491911889:703804..703874TCONS_00053347-exon-scaffold_228-1491911889:703804..703874Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1491911889:703381..703693TCONS_00053347-exon-scaffold_228-1491911889:703381..703693Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1491911889:703003..703233TCONS_00053347-exon-scaffold_228-1491911889:703003..703233Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1491911889:702309..702605TCONS_00053347-exon-scaffold_228-1491911889:702309..702605Clytia hemisphaericaexon
TCONS_00053347-exon-scaffold_228-1491911889:701500..701796TCONS_00053347-exon-scaffold_228-1491911889:701500..701796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:701500..705727 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0248003	0	0.0281719	0.480152	0.379423	0	1.62236	0	8.68457e-07	0	2.35863e-05	0.702332	0	1.88041	4.2982e-09	1.15867e-07	0.110429	0	4.96219e-06	1.35289e-07	2.2401e-05	2.64934e-07	0	0	0	1.18566	0	3.87085e-05	0.000538296
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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