TCONS_00053838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053838
Unique NameTCONS_00053838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053838 ID=TCONS_00053838|Name=TCONS_00053838|organism=Clytia hemisphaerica|type=transcript|length=1276bp
GTAAACTTACCTTtagttagatgttttgtttcaattaGATGAGCGAGCGA
CTTTTTATCTTCCTTCGATGAGACTGTATAGATTTCGCTGTACAAGACTA
GAGAGATATTTTCAACATTCAAGATGGCGGCCTGTGAGCAACTATCTTGG
GCATGAAGACATTGACTTTGTTGGGTATCACTTGAAGAGAACCTCTATCA
CTTTGGCAATACATTCATGTTTTCCTTTTCTATACTACGTTGGTCTCGGA
ATATCATCACCAAACTTGAAGTTATTATACATACATAATTTATCAGGATT
TGGTCTTCTATTTGCTCTGATTTGCATTGGATCATTTACAGCAGGGCTCC
TTATAGCTGTATCCTGGAAAATCAGTAATTGGCAATATCATCCGCTAACA
AGAGATTTATTGAGATATGGTTCGCCATGGAGAGCTGTTGCTTCAACAAT
CAATTTGGAATATAGAAGAATGGAGAAATTCTCTTCTATAACAGGAGGGA
CAAGTATATATGTTACAGATTCATGGATTATAAAATGCTCTACCTACAAA
ATTTACATTGCACAGCAGACCGATTCACATTTATCAGTTGTTCAGAGTGA
GGAATACTTATATAACCAAGAAACAAATCAAAGTgcacagtttttgaaaa
ttaaagtcATGACGATTCCACCCAATGAACAGAGTTTCTTTCTCAATCTT
AATTCACTGGAGTATACCGATTTAAAGGATAGGATCTCATCTCCTTTGAG
ACTTGCCAGGGATGTGATTGTCCATCAAACATTGAGTGACCGATTCTTAG
AGGCTTTCAAACTACAAGTTAGCACTAATGGCGCTCCAGAAGTCATGCCT
AATAACGTAGCTgaACGCGAAAGCTGTATTGGTTGTATGGGTATCCGAGC
TGATATCGTTCTTTCAAAACATTGTTTACCAAGAGCTTTACCACAAGCTG
AGCAATGCCAACAATGTTATTGTAGACCAATGTGGTGCTTGGAATGCATG
GGAAAATGGTTTGCCAGCAGACAAAATCAACAGGAGCCGGAATCTTGGAT
GTCTTCAACTGCGCCTTGCCCTACTTGCCGTGCTAAATTTTGCATGATTG
ATGTCTTCAAAATTTAATTATAATACAGAAAACATTacttttataaacat
ttttttaatgttttataaATGTTAAACTTGTTAGCTGTcttaaaaattgt
atattttggaaattattatttattttatcaaaCAGGGTACAAATTACAGA
ATTCTTTGTCAAATCATTATTTCAAC
Run BLAST on NCBI

protein sequence of TCONS_00053838-protein

>TCONS_00053838-protein ID=TCONS_00053838-protein|Name=TCONS_00053838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=349bp
MRLYRFRCTRLERYFQHSRWRPVSNYLGHEDIDFVGYHLKRTSITLAIHS
CFPFLYYVGLGISSPNLKLLYIHNLSGFGLLFALICIGSFTAGLLIAVSW
KISNWQYHPLTRDLLRYGSPWRAVASTINLEYRRMEKFSSITGGTSIYVT
DSWIIKCSTYKIYIAQQTDSHLSVVQSEEYLYNQETNQSAQFLKIKVMTI
PPNEQSFFLNLNSLEYTDLKDRISSPLRLARDVIVHQTLSDRFLEAFKLQ
VSTNGAPEVMPNNVAERESCIGCMGIRADIVLSKHCLPRALPQAEQCQQC
YCRPMWCLECMGKWFASRQNQQEPESWMSSTAPCPTCRAKFCMIDVFKI
Run BLAST on NCBI

transcript from alignment at scaffold_234:282627..294285-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053838 ID=TCONS_00053838|Name=TCONS_00053838|organism=Clytia hemisphaerica|type=transcript|length=11659bp|location=Sequence derived from alignment at scaffold_234:282627..294285- (Clytia hemisphaerica)
GTAAACTTACCTTTAGTTAGATGTTTTGTTTCAATTAGATGAGCGAGCGA
CTTTTTATCTTCCTTCGATGAGACTGTATAGATTTCGCTGTACAAGACTA
GAGAGATATTTTCAACATTCAAGATGGCGGCCTGTGAGGCAAGAATTTTT
TACAATTTTTTTAGTTAAAAAGGTCTTGTTTTCATTTTATTCTCATTGTC
TGGTGATATGGCACCTAATAGTGAATACTTTGAAGTATATTTTTCGTTTG
TATATTTCTTTATTGTTTTGTGTTTTGTTGTACCACCGAGAGAACTTATT
GCAGCAGGATTGACTGTTCAAAATTTATTTAGCAACTATCTTGGGCATGA
AGACATTGACTTTGTTGGGTATCACTTGAAGAGAACCTCTATCACTTTGG
CAATACATTCATGTTTTCCTTTTCGTAAGTTGGGTTTCTCAGTTTTTCTT
TTCCTGCTCCTGCAGTTAGGAACATTTGGCGAGTTCCTGTACGCAACCGC
GATCTAAAAAATCATAACAACACTCATTAAAAAATGACGTTCGTGTGTTT
TCGCACTTTTTTTAGCCTAGAAGATGTAGCAAACATAGTAAATATAAGCA
CACTGTGCTTTTAATTGGCTGAAATTTTTTTTTGCGTTGGAGAAACTTTT
TTAAACTTTCAGCTATGATTGAACAAACTGTTACAATAAAAATTATCCAG
CGCATTTTTTATCTTCTTTTCTTCTTAATCTTCAATGAAGAACTCAAATT
TTACTGAATTTAAGCACATAAGATATTCTTATAATTATTGATATTCACTG
AAACACCGTTCGTTGTGTGCTGCGGTGGAGTGTATGACGTAACTTGCGCG
GTAAATAACTTGCCTTTTGTTGGAAGATCGTATTGGGCGTTTTGGTGTTA
CCACCCTAGAAGCTAGCGGGCGCCCCTGTCTTTCCGCAACTCTTTCCACC
ATTTTAGATGGCCATAACAATAGATCTAAAAGGGCGCCATAATCTTGGAA
GATAATTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGGTCTCCAGCTTTGGGAAGTAGCAATGTTTTTGGTTGTTTTTGATGG
AAAATAGTAAGAAACTTAAGTTTACAAGTGTCATTTAGTTTTTTCTGGCT
CATAGAATGGCAGGATCCTGGATGGTTTCCCTAACTTTCCTGGCTGGAGG
ATAGACCTTTTTTCAAAGAGGACGTCCTGTGACGAGTGACGTCGTCCTGT
TAAATAATTATATAGTCAGGACCCTGCCGACGCACCGGACTGTCCGGTGT
ATTTGTCCGGTGGCAAAAAGTATCCTTTCGCTACACCGGACGCAATAAGC
CCGGTGTCAGTCCGGTGTTGCATAGAGGGAATTTTGGACGCCGGACATTT
ACGAAACAAAAAAGTTAAGAAACACCGGACGCTCCGGACTGGTCATTTCC
GGTGTTTTGATTGTCCGGTGGAAAAAAATTACCTTCTCCGACACCGGACA
TCCGACTTCCTTAAGGCCGGTGTAGAGATTGTCCGGTGGTAAAAAAAATT
CTCATTTTACACCGGACTTTTGCGTGTCCGGTGTTCGTTAAGTCCGGTGC
GTCGGCAGGGTCCTATGTAGTCCAGCCATAAAAACAATGATAGAGCCATG
CATAATTACTGTACCATGCATATTGTAATGATTATGCATGGTTTTATCAT
TGTTTTTCTGCTGGACTACATAATTATTCAACAGGGTGGCCTCTTTGAAA
AAAAGTCTATAGGAGAGCACTTTTAATCTTTTAATATACCTTTTTATCAC
TTTGTTTTTATTAGACAGGGGTCCTCAACAAAAAACTTAGGAATTTCTTA
TTGGCAGGTAAAGTAGCGATAAAATGGACAAAACCATAGTTTGAGCCACA
TTGCTTAATCAGAACCAGATGGTTTAAACTATTGTTTTTTTGTGCCCTTA
TAATAGACCTTTTTTAAAGAGGCAGCCATGTTGAATAATTATGTACTCCA
GCATAAAAACAATGATACAGCCATGCATAATTAATGTATCATGTATATTT
TAAAAATAAGGCATGGCTGTATATTGTTATTATGCTGGAGTACATAATTA
TTCAACATTGCTGCCTCTTTAAAAAAAGGTCTATGGACAAAACAGAACGG
TTTAAATTTTTTTTCCCAGAAAGTAAGCGGTTCAGGATCTTAAAATTTTG
AAGCTATCATTACAGCAACATTTTGTCTTATGTGTCATTTTTTATTTTGA
TTACCTAATCTTATGGCTCGCCAAAGCGGAAATAAATACTATCTTTCATT
TTGCGACACTATTTGGAGCTAAACCTTAGCTCAGGTTAATTCCAAGTCGA
ATGAAGTACATCCCGCCACTGCACCGAGGCGGCTATGAAATAGTATATTT
CGGCTGCCGGTTATTCTTTCCTTCGCCTATATATATCCTACCGTCAAGCC
CCTTTCAGCGCAGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTGCTTTTCGT
CTTTATAGCCTTTTCGTCTTTTGCTTTAATAAGATCAAATTAAATGCTTG
TTATAGTGGATTTTTGACTGGATTGATGTGTCATTCTGCATGTGTTTTGA
TTTTTGAGATGTTGTCATAAACTTTTTGCAGTTTTCAAAATCACCCAAAC
ATTTTCTGCAACTCTCCTTGTTTTATTATTGATTTAACGACAGCAAGTCA
AAAAGGAGGCTGTTCTCTAACTATCATTTCTTCCATTGTTCTGGGGACTG
GTCGGTTTTTATTTAAAAATTTTTCAATGGCCTGAATTTATTATTCTAAA
CGTTTAACTAATATCCTACATTTGAGGTAACAACATTTGACCTTTTTAAG
CAAGGGTAGTACCAGCAATGCCAGACATCCAGGATAAATTTATCAATTCT
TTGCTAATGTTTTGAAATTAATCATTTTATAGTGTTGTGTCAAATTTGAT
TGATCGATATTCGTTGACTACTATCGGAAGTGTCTATCCTTTTGGGACAA
TGGGTTGAAACTTTATAATAAGGGATAAGAAGACAAGTTTGACTGGCAGG
TTCAATGCTCCAATTTGCAGCCAAATGTTTTGTGACTAAATGCTAAACAG
GTTTTTTGGAAATACTTGATAAGTCAAATTATTTTCGCTATAGGAGTTGA
TGGAGAAAGGGCTTCACAAAATGACTTAGTCATCCAGTATATCTTAAATG
GAATCACAACCTAACTGTAATGGTATGGAGTACTTTGAAATTTTAGTGCT
GTCCTTTCGAGACAAATACTTGCAGAATTTGTATTAAATGCTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCACTTTCAAAAACTT
CTCATCTTGCCTCCTTAGTCTGCCTTTTTTGTGTTTTTATTCCTAGGGCC
TTATACTTTAATTGCATCTGAGACGTGGGAATTAACTTACATTTCGTGAC
ACTATCTTTCATTTCGTGACACTATCTTTCATTTCGCGATGGCACTTCTT
GACTTCCACAATAAAGATAGCCTGGGTATCCAGACTCAAAATTTCAGAAA
AAAACACTCTTGCCTGAACATAGAGTATATATATAGAGCTAACTCTTCAC
ACAAAAATTACGGGAAACGCATGTTTTGACTTTGTACCCTATGCTGCACT
CAAGCACTTAAGCCAGAGTCCCGCAAAGGCGGGACAAAAATCAGTTTTTT
GAAGTTTGCAAAAAAATGCCATACATATGAAAGATCTTCAGTATGTGAAT
AGAGCAGTAAAAAATACAACTTTTCTATTTTTCCTTTTTTTTGCAAAAGT
TCTAGGGATGAAAATAAAGGGATAATGATAGTTGAATACTATCCATTGAT
GACCCGCGGCACTATCGTAAAGCTAGAATTGCTTCGCGTACTCTTCGCTT
GAGAAAATGATTGAGCGATTGAAGTTTTTCACCAGCGCAGGAGTTCGCGG
AGCATTCTCGGCTCAATCCTCGGCCCGACTCATTTTGTTTAGAAATGAAC
CTGCGTTTTCATTTTCATTTGTTCATCTTTTTTTGCATGGTCAGCTTTTT
CGCGCGCATCGAAAAATATCACAAACCACGCGAAAATTCTGCTCAGTGAC
TGGGCGCGTACTGACCAATTAGAGACACTCGCATATGCAGGGACAGATAT
CCCTGCAGACGAGTTACTTGGACCAGACCGTAAACCAGAGACAAAATATT
AAAAAAAAACTAGACGTTGAAATAGTTTACGGTCTGGATATCCAGGGTAC
AATAAAGATAGTATCCTGTAAAAAAGATAGTATCGTTTCAATTAAGATAA
TGTTTTTTTGGGAAAATAGTGTCGCGAGATGAAAGATAGTGTCACAAAAT
GAAAGATAGTGTCGCAAAATGAAAGATAGTGCCGCGAAATGAAAGATAGT
GTCGCGAAATGAAAGATAGTGTTGCGAAATGAAAGATAGTGTCGCAAAAT
GAAAGATAGTGTCGCGAAATGAAAGATAGTATTTATTTCCACTTTGGCGC
GCCATATAATCTGGCATAGGTGAAGTGAAATTTTATTCATAATTGACATT
CTAACTGGTAGGAATAAGCCTTGGGGCAGAATTTACTGCACAGTCAAGGT
TTTGTGTCCTGTACGTAACAATTTTATTTGATATGCCCTTATCATTTTTT
GTGAAGCTGTTTGAACAAATAAATTGTATTTTTTAATTCGTTTACCTGTA
TGTTGTATAGCTTTGAAAACAGTTTAGGTGTGAAGACAACAAAAAAAAGG
TTATTTGTCCTGCAATTGGTCTAATTGGAGACTGTTCTATGTAAATGTCC
CGTACGTAACAGACACAAAATTGCATAAATTATTTTATAAATAGTTTATA
AGCATTATTCTTATTGCTTTTCTGTATGTCTACCATACTATTTGTCTAGA
AATTATAGCCAAAGTTACAAACAAAACCTGATTTTGAAAATACCTCAGCT
CAAAGTACATGCTGTCCCGTATGTAACCTTGTCCCGTACGTAACAAGATT
AATATGCCCCTGAAAAGTATTTTTTTACAACTTAACGTTGTTTAGACACA
CTTTCTAGGCTCTGATCAGTCATCACTTTGACTCACTTTGTAAGCTTTCC
TGATGAGTGAAGCTTTGATTAAACTCTTTAACACGCATTTTAAAACTTCA
AGTTCAAGCTTCAATTGATTTTGATGATGTTAGTAGTGCTTATGGACTTG
TAAAAAATTTCATGAATAGCTCTAAGGTATATATTCTTTCTTTGAAGTGA
CATTAAAGAGGGCAGTCCAAAAATTGTTACGCACGGGACATAAAGTATGG
GTATTTTAAAGATTTTGAGTGGCAATTAGGGCTAGAATCTTTGGGAATAG
TCTTCAAATATATTAATTCATATATACCAAAGATTTTTTTAAAAGGGGAA
AGAAAAATAAAGGGTAAAACTTCTTAAATTCTGTGAATTCTACGAAAAAT
ATACAAAAATCCACAAGTTCAACTTAGAAAAAATGGTAAAAAACCGTAAA
AACACCAATAATTGCAGATAATTGCACAAAAAACTGACATAATTGCTATT
ATGTCTTTTTCATGTTGAATAATAGTGCCACAAATCTGTACAAATGCCTT
TTTCTTTGAAATATGTTGTGTTACGTACGGGACAATTTTTCATGAAAGTC
GTTTGGGAAAAGCTCTTTTACTAAAAGCACTTAAAAATGCAAAACATTTC
TAATAAAGATTTTATTATTTCCTTATGTCCTTACCTTGATGTAAGTTAGC
ATTTGGCTATGAATTAATCAATTTTGAACACCCTAAGAGTTGATTTGGGG
TAATTCAGCATTTTAAGCATAAAAAACAGCCTTCAATTTGAAATTTTGAA
CCAATTTTGTACTTGAAACTATTTGGAAATAATGTTTTTTGATGACTTTG
ATATAGTTGAAGTGAAAAAATATCATTTAGGATCTTCACTTACTACAAAA
AAAGCATAGCCTAGTTAAATATGTTTAAATGTCTTTGTTACGTACAGCTA
CAGGACATTTTTCAAATTTTAAATCTTAATAACTTTTTTTCACTTAATAA
ATTTTTTTTTGCCATTTTTTATGTCTACTTTACCGGCATTGGGCCGATAA
GCTTCAGATGCCCTCCCCCCTTGCTCTTATCAGCCAAAATTTTCAAAACA
AACTTTTACCTCTTCGAAAACACAATTTTCTCTATCATGTCTGCCACCAT
CGTGTTGATCTTAAACTTGCATTCCAAACCGTCATCGTTGAATTTTTGTC
TATTTGCACCAGCATTGAGTTTGTTCATACCCGCATTGATATTGTTAATC
AAAACAAAAGTTAAAAAGACGCAACATTTTGAAGGCGTCGTGGTATAGTG
GACATCAACCTTGATTCCTGTACAAGTGACCAAGGTTTGATTGGCAAGTG
ACGAACCTTTGCCCGGGTCAACCCATGCCATGTGAGGGGAATTGGGTAGT
CAGTTCAAAGTGTTGACGGGATGCTTACTCAAAGCATCTATAGTTGCGAG
AATGGGCTCTAGAGCCTCCTGTAACTCAACCATAATAGATAGATAGATAG
AGAGGTAAAGCTGGGCCAATACGCAATGGAAAAGAGTTTTTTATCTAAGC
TAATTCGAAACTGTACCGTCAACTGCTCTAACTTAGGACTATCTGACAAA
ACATGGGACGGCAATTCAGCCACCATTTCACCGAACCTCCAAATTCATTT
GATTTGAGTTAATGAACGGCGTATTAAAAAGTACACGATTTCTCTTTCGC
ACCAAGTAGGCTTTTAAATTGAAATAGGAAAAAAAATCCGCAGTGGAACA
CACACGAGTGTCTGTGCACTCTAGGAGGAACGAAGTAGTATGATTGATAA
ACTTGGTGGAGTTATCAAAACAAATTTGTTGTCAAAGAGATTTAACAGTA
AGTGAAAATACAGGCCAGATATCAACCAGTCCAATGTTTTGGCCAATCGT
CCCAAGTTAGAATTAACAAATAACGAGTGTGCTGTGACATCAAAAGCTCC
ATCGTTTTGCAACTAATATGGTCTTCTTCGTTCCAGACAATCGCGCATGT
TCCACTACCGATTTTTTTCATATTTCGATTTAAAAGCCTACTCGGTGAGA
AATTGTGTATTTTTGATACGCCGTTCATTAACTCAAATCAAATGACTTTG
GAGGCTCGGTGAAAAGGTAGCTGAATTGCCGTCCCATGTTTTGTCGATAG
TCCCAAGTTAGAGTAGTTGATGGTATAATAAAAAAGGTATACCTTTGATT
TTGCAAAATGTTGAAACGAATGCAAACTTTTGAAAAACCCCAACTTGTAC
CCTCATAATGTCAAATTGACATTGTGCATAGTCAAATAAATATGGAGAGG
CCCCCTTAAACTCAACAAATACAGCTGCATGTAACTGTAGCATACCAAGG
GCCAGTCTGGAAAGGAGGAAAATGTTGCGTCGGAGGCGTTTTGCGTCAAA
AGGTATAATGTATGTATGTATGTAATAGTTTATTTCCTGTTGACAAAAAG
GTAGCAACAAAGGCTAATAAAATTCAACTCTACTTTACAATTTTTTTAGA
GGTTGTTAAACATTTCTTCTTTTATAGGGAAAAGAACTTTTGAATCTACA
AATTCACCGTTTCCTGAGAAAAATTCACAGTTTCCTTGTTTCTCAATGAC
CAATAATTAAGTGCTACTCTAGGCCATTTTTCATGCCCTTTTAGCGTCCG
GTCATTGGACGCTGTCCCTCCTGAAATCACTAAAATTTTGGTAAAAATAG
CCTTTTTTGCGGAAAAAACAAAAGAAACTTTCAAGTTTATTTGAGATTTT
TTATAAAAAATCAAAATAGCAGTCACTTTATTACACTTTATTTTTTGTTT
AACAGTATACTACGTTGGTCTCGGAATATCATCACCAAACTTGAAGTTAT
TATACATACATAATTTATCAGGATTTGGTCTTCTATTTGCTCTGATTTGC
ATTGGATCATTTACAGCAGGGCTCCTTATAGCTGTATCCTGGAAAATCAG
TAATTGGCAATATCATCCGCTAACAAGAGATTTATTGAGATATGGTTCGC
CATGGAGAGCTGTTGCTTCAACAATCAATTTGGAATATAGAAGAATGGAG
AAATTCTCTTCTATAACAGGAGGGACAAGTATATATGTTACAGATTCATG
GATTATAAAATGCTCTACCTACAAAATTTACATTGCACAGCAGACCGATT
CACATTTATCAGTTGTTCAGAGTGAGGAATACTTATATAACCAAGAAACA
AATCAAAGTGCACAGTTTTTGAAAATTAAAGTCATGACGATTCCACCCAA
TGAACAGAGTTTCTTTCTCAATCTTAATTCACTGGAGTATACCGATTTAA
AGGATAGGATCTCATCTCCTTTGAGACTTGCCAGGGATGTGATTGTCCAT
CAAACATTGAGTGACCGATTCTTAGAGGCTTTCAAACTACAAGTTAGCAC
TAATGGCGCTCCAGAAGTCATGCCTAATAACGTAGCTGTGAGTAGTATCA
TTTTATGAGTTTTTTTTCAGAGAATGACCAATTTCCATTTCTTTGATTTT
GGATTTTAAAAACATTATATTTCAATAGCTGTCTATTTTATACAGATTAC
AAGAAATTTTGAAAAAAGTATGAGGCTTTTCAAAAAGAAAACAGGGCAAT
AATTTTTTAGAATCCTGTATTCATTCATTTGATGGTCAAAACATTTGAAT
CTCCTTCAAATCTAATAAAGCATGGATGCTAAAAAATCAAAGCAAAGCTT
TCATCTTTTAAATGTAAATATAATGAATAATGTAGTCATATAACTTTGAA
ACACCCAGTATAGCTATTTACATTATCCATATAAATAAATTTTAGGAACG
CGAAAGCTGTATTGGTTGTATGGGTATCCGAGCTGATATCGTTCTTTCAA
AACATTGTTTACCAAGAGCTTTACCACAAGCTGAGCAATGCCAACAATGT
TATTGTAGACCAATGTGGTGCTTGGAATGCATGGGAAAATGGTTTGCCAG
CAGACAAAATCAACAGGAGCCGGAATCTTGGATGTCTTCAACTGCGCCTT
GCCCTACTTGCCGTGCTAAATTTTGCATGATTGATGTCTTCAAAATTTAA
TTATAATACAGAAAACATTACTTTTATAAACATTTTTTTAATGTTTTATA
AATGTTAAACTTGTTAGCTGTCTTAAAAATTGTATATTTTGGAAATTATT
ATTTATTTTATCAAACAGGGTACAAATTACAGAATTCTTTGTCAAATCAT
TATTTCAAC

Coding sequence (CDS) from alignment at scaffold_234:282627..294285-

>TCONS_00053838 ID=TCONS_00053838|Name=TCONS_00053838|organism=Clytia hemisphaerica|type=CDS|length=4200bp|location=Sequence derived from alignment at scaffold_234:282627..294285- (Clytia hemisphaerica)
GAACGCGAAAGCTGTATTGGTTGTATGGGTATCCGAGCTGATATCGTTCT
TTCAAAACATTGTTTACCAAGAGCTTTACCACAAGCTGAGCAATGCCAAC
AATGTTATTGTAGACCAATGTGGTGCTTGGAATGCATGGGAAAATGGTTT
GCCAGCAGACAAAATCAACAGGAGCCGGAATCTTGGATGTCTTCAACTGC
GCCTTGCCCTACTTGCCGTGCTAAATTTTGCATGATTGATGTCTTCAAAA
TTTAATATACTACGTTGGTCTCGGAATATCATCACCAAACTTGAAGTTAT
TATACATACATAATTTATCAGGATTTGGTCTTCTATTTGCTCTGATTTGC
ATTGGATCATTTACAGCAGGGCTCCTTATAGCTGTATCCTGGAAAATCAG
TAATTGGCAATATCATCCGCTAACAAGAGATTTATTGAGATATGGTTCGC
CATGGAGAGCTGTTGCTTCAACAATCAATTTGGAATATAGAAGAATGGAG
AAATTCTCTTCTATAACAGGAGGGACAAGTATATATGTTACAGATTCATG
GATTATAAAATGCTCTACCTACAAAATTTACATTGCACAGCAGACCGATT
CACATTTATCAGTTGTTCAGAGTGAGGAATACTTATATAACCAAGAAACA
AATCAAAGTGCACAGTTTTTGAAAATTAAAGTCATGACGATTCCACCCAA
TGAACAGAGTTTCTTTCTCAATCTTAATTCACTGGAGTATACCGATTTAA
AGGATAGGATCTCATCTCCTTTGAGACTTGCCAGGGATGTGATTGTCCAT
CAAACATTGAGTGACCGATTCTTAGAGGCTTTCAAACTACAAGTTAGCAC
TAATGGCGCTCCAGAAGTCATGCCTAATAACGTAGCTCAACTATCTTGGG
CATGAAGACATTGACTTTGTTGGGTATCACTTGAAGAGAACCTCTATCAC
TTTGGCAATACATTCATGTTTTCCTTTTCATGAGACTGTATAGATTTCGC
TGTACAAGACTAGAGAGATATTTTCAACATTCAAGATGGCGGCCTGTGAG
GAACGCGAAAGCTGTATTGGTTGTATGGGTATCCGAGCTGATATCGTTCT
TTCAAAACATTGTTTACCAAGAGCTTTACCACAAGCTGAGCAATGCCAAC
AATGTTATTGTAGACCAATGTGGTGCTTGGAATGCATGGGAAAATGGTTT
GCCAGCAGACAAAATCAACAGGAGCCGGAATCTTGGATGTCTTCAACTGC
GCCTTGCCCTACTTGCCGTGCTAAATTTTGCATGATTGATGTCTTCAAAA
TTTAATATACTACGTTGGTCTCGGAATATCATCACCAAACTTGAAGTTAT
TATACATACATAATTTATCAGGATTTGGTCTTCTATTTGCTCTGATTTGC
ATTGGATCATTTACAGCAGGGCTCCTTATAGCTGTATCCTGGAAAATCAG
TAATTGGCAATATCATCCGCTAACAAGAGATTTATTGAGATATGGTTCGC
CATGGAGAGCTGTTGCTTCAACAATCAATTTGGAATATAGAAGAATGGAG
AAATTCTCTTCTATAACAGGAGGGACAAGTATATATGTTACAGATTCATG
GATTATAAAATGCTCTACCTACAAAATTTACATTGCACAGCAGACCGATT
CACATTTATCAGTTGTTCAGAGTGAGGAATACTTATATAACCAAGAAACA
AATCAAAGTGCACAGTTTTTGAAAATTAAAGTCATGACGATTCCACCCAA
TGAACAGAGTTTCTTTCTCAATCTTAATTCACTGGAGTATACCGATTTAA
AGGATAGGATCTCATCTCCTTTGAGACTTGCCAGGGATGTGATTGTCCAT
CAAACATTGAGTGACCGATTCTTAGAGGCTTTCAAACTACAAGTTAGCAC
TAATGGCGCTCCAGAAGTCATGCCTAATAACGTAGCTCAACTATCTTGGG
CATGAAGACATTGACTTTGTTGGGTATCACTTGAAGAGAACCTCTATCAC
TTTGGCAATACATTCATGTTTTCCTTTTCATGAGACTGTATAGATTTCGC
TGTACAAGACTAGAGAGATATTTTCAACATTCAAGATGGCGGCCTGTGAG
GAACGCGAAAGCTGTATTGGTTGTATGGGTATCCGAGCTGATATCGTTCT
TTCAAAACATTGTTTACCAAGAGCTTTACCACAAGCTGAGCAATGCCAAC
AATGTTATTGTAGACCAATGTGGTGCTTGGAATGCATGGGAAAATGGTTT
GCCAGCAGACAAAATCAACAGGAGCCGGAATCTTGGATGTCTTCAACTGC
GCCTTGCCCTACTTGCCGTGCTAAATTTTGCATGATTGATGTCTTCAAAA
TTTAATATACTACGTTGGTCTCGGAATATCATCACCAAACTTGAAGTTAT
TATACATACATAATTTATCAGGATTTGGTCTTCTATTTGCTCTGATTTGC
ATTGGATCATTTACAGCAGGGCTCCTTATAGCTGTATCCTGGAAAATCAG
TAATTGGCAATATCATCCGCTAACAAGAGATTTATTGAGATATGGTTCGC
CATGGAGAGCTGTTGCTTCAACAATCAATTTGGAATATAGAAGAATGGAG
AAATTCTCTTCTATAACAGGAGGGACAAGTATATATGTTACAGATTCATG
GATTATAAAATGCTCTACCTACAAAATTTACATTGCACAGCAGACCGATT
CACATTTATCAGTTGTTCAGAGTGAGGAATACTTATATAACCAAGAAACA
AATCAAAGTGCACAGTTTTTGAAAATTAAAGTCATGACGATTCCACCCAA
TGAACAGAGTTTCTTTCTCAATCTTAATTCACTGGAGTATACCGATTTAA
AGGATAGGATCTCATCTCCTTTGAGACTTGCCAGGGATGTGATTGTCCAT
CAAACATTGAGTGACCGATTCTTAGAGGCTTTCAAACTACAAGTTAGCAC
TAATGGCGCTCCAGAAGTCATGCCTAATAACGTAGCTCAACTATCTTGGG
CATGAAGACATTGACTTTGTTGGGTATCACTTGAAGAGAACCTCTATCAC
TTTGGCAATACATTCATGTTTTCCTTTTCATGAGACTGTATAGATTTCGC
TGTACAAGACTAGAGAGATATTTTCAACATTCAAGATGGCGGCCTGTGAG
GAACGCGAAAGCTGTATTGGTTGTATGGGTATCCGAGCTGATATCGTTCT
TTCAAAACATTGTTTACCAAGAGCTTTACCACAAGCTGAGCAATGCCAAC
AATGTTATTGTAGACCAATGTGGTGCTTGGAATGCATGGGAAAATGGTTT
GCCAGCAGACAAAATCAACAGGAGCCGGAATCTTGGATGTCTTCAACTGC
GCCTTGCCCTACTTGCCGTGCTAAATTTTGCATGATTGATGTCTTCAAAA
TTTAATATACTACGTTGGTCTCGGAATATCATCACCAAACTTGAAGTTAT
TATACATACATAATTTATCAGGATTTGGTCTTCTATTTGCTCTGATTTGC
ATTGGATCATTTACAGCAGGGCTCCTTATAGCTGTATCCTGGAAAATCAG
TAATTGGCAATATCATCCGCTAACAAGAGATTTATTGAGATATGGTTCGC
CATGGAGAGCTGTTGCTTCAACAATCAATTTGGAATATAGAAGAATGGAG
AAATTCTCTTCTATAACAGGAGGGACAAGTATATATGTTACAGATTCATG
GATTATAAAATGCTCTACCTACAAAATTTACATTGCACAGCAGACCGATT
CACATTTATCAGTTGTTCAGAGTGAGGAATACTTATATAACCAAGAAACA
AATCAAAGTGCACAGTTTTTGAAAATTAAAGTCATGACGATTCCACCCAA
TGAACAGAGTTTCTTTCTCAATCTTAATTCACTGGAGTATACCGATTTAA
AGGATAGGATCTCATCTCCTTTGAGACTTGCCAGGGATGTGATTGTCCAT
CAAACATTGAGTGACCGATTCTTAGAGGCTTTCAAACTACAAGTTAGCAC
TAATGGCGCTCCAGAAGTCATGCCTAATAACGTAGCTCAACTATCTTGGG
CATGAAGACATTGACTTTGTTGGGTATCACTTGAAGAGAACCTCTATCAC
TTTGGCAATACATTCATGTTTTCCTTTTCATGAGACTGTATAGATTTCGC
TGTACAAGACTAGAGAGATATTTTCAACATTCAAGATGGCGGCCTGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033973XLOC_033973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053838-exon-scaffold_234-1575043694:294148..294285TCONS_00053838-exon-scaffold_234-1575043694:294148..294285Clytia hemisphaericaexon
TCONS_00053838-exon-scaffold_234-1575043694:293862..293953TCONS_00053838-exon-scaffold_234-1575043694:293862..293953Clytia hemisphaericaexon
TCONS_00053838-exon-scaffold_234-1575043694:283399..284030TCONS_00053838-exon-scaffold_234-1575043694:283399..284030Clytia hemisphaericaexon
TCONS_00053838-exon-scaffold_234-1575043694:282627..283040TCONS_00053838-exon-scaffold_234-1575043694:282627..283040Clytia hemisphaericaexon
TCONS_00053838-exon-scaffold_234-1510915933:294148..294285TCONS_00053838-exon-scaffold_234-1510915933:294148..294285Clytia hemisphaericaexon
TCONS_00053838-exon-scaffold_234-1510915933:293862..293953TCONS_00053838-exon-scaffold_234-1510915933:293862..293953Clytia hemisphaericaexon
TCONS_00053838-exon-scaffold_234-1510915933:283399..284030TCONS_00053838-exon-scaffold_234-1510915933:283399..284030Clytia hemisphaericaexon
TCONS_00053838-exon-scaffold_234-1510915933:282627..283040TCONS_00053838-exon-scaffold_234-1510915933:282627..283040Clytia hemisphaericaexon
TCONS_00053838-exon-scaffold_234-1491911889:294148..294285TCONS_00053838-exon-scaffold_234-1491911889:294148..294285Clytia hemisphaericaexon
TCONS_00053838-exon-scaffold_234-1491911889:293862..293953TCONS_00053838-exon-scaffold_234-1491911889:293862..293953Clytia hemisphaericaexon
TCONS_00053838-exon-scaffold_234-1491911889:283399..284030TCONS_00053838-exon-scaffold_234-1491911889:283399..284030Clytia hemisphaericaexon
TCONS_00053838-exon-scaffold_234-1491911889:282627..283040TCONS_00053838-exon-scaffold_234-1491911889:282627..283040Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053838-proteinTCONS_00053838-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:282627..294285 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.8732	37.2535	26.185	31.2137	16.2669	11.342	17.7888	16.6536	9.26789	6.29536	9.7048	5.90699	8.96615	5.63587	6.44654	6.70193	7.19091	5.45959	2.26282	4.34111	11.3196	13.0504	28.8814	21.4497	19.2061	20.3995	7.78352	4.67257	18.9012	21.6645
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018801Tmpp129
IPR013083Znf_RING/FYVE/PHD
Blast
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BLAST of TCONS_00053838 vs. Swiss-Prot (Human)
Match: TM129 (E3 ubiquitin-protein ligase TM129 OS=Homo sapiens GN=TMEM129 PE=1 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 5.975e-93
Identity = 139/330 (42.12%), Postives = 205/330 (62.12%), Query Frame = 2 
Query:  134 VSNYLGHEDIDFVGYHLKRTSITLAIHSCFPFLYYVGLGISSPNLKLLYIHNLSGFGLLFALICIGSFTAGLLIAVSWKISNWQYHPLTRDLLRYGSP---WRAVASTINLEYRRMEKFSSITGGTSIYVTDSWIIKCSTYKIYIAQQTDSHLSVVQSEEYLYNQETNQSAQFLKIKVMTIPPNEQSFFLNLNSLEYTDLKDRISSPLRLARDVIVHQTLSDRFLEAFKLQVSTNGAPEVMPNNVAERESCIGCMGIRADIVLSKHCLPRALPQAEQCQQCYCRPMWCLECMGKWFASRQNQQEPESWMSSTAPCPTCRAKFCMIDVFKI 1114
            +S +LG ED  FV +HL+RT+ TL  HS  P  YYVG+ +++   +L  +        LF L+ +   +   ++   W    W  HPL R L  Y  P   W+AVAS++N E+RR++KF++   G  + VTD+W++K +TY++++AQQ D HL+V +S ++  + ++N   Q L I+V +  P  Q+F + LNS EY +L +++ +P+R A  V++HQ+L D FLE F   V  N A  V  +   E E+CIGCM  RA + L K C   A     +CQQCYCRPMWCL CMGKWFASRQ+   P++W++S  PCPTCRA+FC++DV  +
Sbjct:   37 LSGWLGSEDAAFVPFHLRRTAATLLCHSLLPLGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWACHPLARTLALYALPQSGWQAVASSVNTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVHVAQQQDVHLTVTESRQHELSPDSNLPVQLLTIRVASTNPAVQAFDIWLNSTEYGELCEKLRAPIRRAAHVVIHQSLGDLFLETFASLVEVNPAYSVPSSQ--ELEACIGCMQTRASVKLVKTCQEAA---TGECQQCYCRPMWCLTCMGKWFASRQDPLRPDTWLASRVPCPTCRARFCILDVCTV 361
The following BLAST results are available for this feature:
BLAST of TCONS_00053838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM1295.975e-9342.12E3 ubiquitin-protein ligase TM129 OS=Homo sapiens ... [more]
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