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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053848 ID=TCONS_00053848|Name=TCONS_00053848|organism=Clytia hemisphaerica|type=transcript|length=2315bpRun BLAST on NCBI protein sequence of TCONS_00053848-protein >TCONS_00053848-protein ID=TCONS_00053848-protein|Name=TCONS_00053848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=425bp MVKMNLTTIFICLFWLLMVTWAQVDEEEVRASHQKYAEMMKHDGKKRVKVRun BLAST on NCBI transcript from alignment at scaffold_234:417652..426466- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053848 ID=TCONS_00053848|Name=TCONS_00053848|organism=Clytia hemisphaerica|type=transcript|length=8815bp|location=Sequence derived from alignment at scaffold_234:417652..426466- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_234:417652..426466- >TCONS_00053848 ID=TCONS_00053848|Name=TCONS_00053848|organism=Clytia hemisphaerica|type=CDS|length=16614bp|location=Sequence derived from alignment at scaffold_234:417652..426466- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053848 vs. Swiss-Prot (Human)
Match: CASQ1 (Calsequestrin-1 OS=Homo sapiens GN=CASQ1 PE=1 SV=3) HSP 1 Score: 162.925 bits (411), Expect = 2.006e-43 Identity = 106/357 (29.69%), Postives = 184/357 (51.54%), Query Frame = 3
Query: 168 QKYAEMMKHDGKKRVKVITQKNVKSLMKKNEILVVFFW--VDNDKKLEKLNEQDMYFLETVAQSFELRKVVISTCEIMANQEFASIAELRFSGMIKIFHKGKVQTYGGQRSPDVLIPFIFKMLTPSVIQIKKKAEKKNFDDI-DLVKVIAYV-DKNSKEYKGFEEASYKYHPLIPFYYVTDAKIAKVFHLKKKNSFQIIKPF-EKSISFPAKGKLTYESIVKFMNTNKQERLVKLRLENIHEIWAIDLKGYLVTIFANVKTQGGSNFFGKCKKLSKQFEKNSNLTFVWIEAEPFPQMIDYWRKSFRIDPLKSNLGVVDIHTQKSTWFELAEGASDQEEFKS---MTKWLSSVYDGQI 1214
Q+ + ++DG RV + KN K++ KK E+L + + ++DK ++ E + LE AQ E + V + + A L + +F +V Y G+ S D ++ F+ +L V I+ + E + F++I D +K+I Y K+S+ YK FE+A+ ++HP IPF+ D+K+AK LK N + F E+ ++ P K + E IV F+ +++ L KL+ E+++E W D+ G + FA G F K +++ +N +L+ +WI+ + FP ++ YW K+F ID +GVV++ S W E+ D+E+ S + WL V +G+I
Sbjct: 35 QEGLDFPEYDGVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEVDSMYVFKGDEVIEYDGEFSADTIVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKSKDSEHYKAFEDAAEEFHPYIPFFATFDSKVAKKLTLKL-NEIDFYEAFMEEPVTIPDKPN-SEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGFEFLETLKAVAQDNTENPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEM----DDEEDLPSAEELEDWLEDVLEGEI 385 The following BLAST results are available for this feature:
BLAST of TCONS_00053848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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