TCONS_00054066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054066
Unique NameTCONS_00054066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1085

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054066 ID=TCONS_00054066|Name=TCONS_00054066|organism=Clytia hemisphaerica|type=transcript|length=1085bp
GAACGCTATTGTATAAATACTGGCGTATTTCGAGAAGAACAtcattcaaa
aaaagaatttgagaaagattttCAAGGAATAAGCAAAGCAAATAGTTACA
AGATGAATACCCTTTTAGCCTTGGTGGTTTTATGTTTGGCTGCAGTCAAT
TcaacaaaaatcgaaaaatgtaTCCGACAAAACGGAGGGTACAGTGATTG
GTTGAAATGGTCACCATGCAGTGTATCATGTGGCAAAGGAACAAGATCTA
GACATCGTTATTGTGATAACCCAATCCCAATGTATGGTGGAGATAAATGT
CAAGGAGATGATAAAGAGACTGAAGAATGTGATATGGGACCTTGCCCAGa
aaaagcAACCCTCGGTGAATATGAAGATATTGGGAAATGCTCCAAACCAT
GTGGCGGGGGCGTTCAAAAAAGACAACGAAAATGTTTACCGCCCATCAAT
CCATACTACAAGAAATGCTACGTTGATTGTCCAAAAGATCGCGATGAGAT
TACTGAGCCTTGCAACACTCATAAATGCAAACAAGAAGTTGGTAATGAAT
GCCAAGGATGTAAACGACAAGCCAATTATGACGCCGCCAGAAACGGCAAA
CCCGAATTCGTCGGTCATGCTTGCCGTACGTCAAATAAATTCTGTGAAGG
ACGAACGAAAGGTATTAAAGCTATGTACGCACAAAATGATTGGTTCTTTT
TACACTGTGCACCAGATGGCTCTTGGTGTAAACCATGCGCTACCAGAGGA
TTGGTTTATAACCCTGAATGTGGAAATTGCGAAGTGAAGAGGTCTGGAGT
CAAATGTACTGATGCTGGTACTTGGGATAAAACGCGAGCTCAAAAAGACG
TTTTGAATGATGAAGAACTCTGGTAAACTTGAAAAATAACCAACCAATTG
TTTTCGACAATTTTATCACGTGATCAATATCTCCCCCGAGATtcatgatt
tatgatttattcaAACATTCGAAGCATCGAATGCACAGGGAGGAAGATTG
ACTGTTAATTTTACAGTTTCTAATTTCATCTTTTTTAACTCTTTATATCg
tatttctaatttttgtctAGACTTTATTTCTAAAG
Run BLAST on NCBI

protein sequence of TCONS_00054066-protein

>TCONS_00054066-protein ID=TCONS_00054066-protein|Name=TCONS_00054066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
ERYCINTGVFREEHHSKKEFEKDFQGISKANSYKMNTLLALVVLCLAAVN
STKIEKCIRQNGGYSDWLKWSPCSVSCGKGTRSRHRYCDNPIPMYGGDKC
QGDDKETEECDMGPCPEKATLGEYEDIGKCSKPCGGGVQKRQRKCLPPIN
PYYKKCYVDCPKDRDEITEPCNTHKCKQEVGNECQGCKRQANYDAARNGK
PEFVGHACRTSNKFCEGRTKGIKAMYAQNDWFFLHCAPDGSWCKPCATRG
LVYNPECGNCEVKRSGVKCTDAGTWDKTRAQKDVLNDEELW
Run BLAST on NCBI

transcript from alignment at scaffold_239:57025..60730-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054066 ID=TCONS_00054066|Name=TCONS_00054066|organism=Clytia hemisphaerica|type=transcript|length=3706bp|location=Sequence derived from alignment at scaffold_239:57025..60730- (Clytia hemisphaerica)
GAACGCTATTGTATAAATACTGGCGTATTTCGAGAAGAACATCATTCAAA
AAAAGAATTTGAGAAAGATTTTCAAGGAATAAGCAAAGCAAATAGTTACA
AGGTATGTATTAATTAATGATGTTAAACATATACAATTACAGTTGACGCT
CTCTAATNACAAGGTATGTATTAATTAATAATGTTAAAACATATACACTT
ATGTTGAAAAAAACGAGTCCTTGTTAAATAAATATTCGTCATGATATCAG
ATTCTCTAAGTTTCTGGTAAAGCTACGCCTCTGTGAACAAAAGTCCTTAC
AACTCCGTGAAATGAAATAAAAAATTATATTTTCATATTTTTTATTATCT
TTAGATGAATACCCTTTTAGCCTTGGTGGTTTTATGTTTGGCTGCAGTCA
ATTCAACAAAAATCGAAAAATGTATCCGACGTAAGTTTGAAAGCTTTTTT
TTTCTTTTGAGCGTTCATGTACATGTCCTATACTAGACATCATACGGCTT
TTTTATACGTATTAACGGAATGAGAAGTCCCGGTTTTCGGTGACGTATGC
TCGCTACGATAAAGGATTCTAAAACTTTTCACAAAAAATATTCATGAAAT
GCTGGTAATAAGAACACTTTAAGAATATTTTAAGGCTAAAAACTCAAATA
GCTAGGAACATCGAAAGGCTCCGGACAATTTGGACGTTCTTACGAATAAG
ATTAAAGCTTTAAAGGGACATAAAAGTACTGACGGAATTTGTAAACAAGC
CGTATGCAGCGGGATACAAAATCAAAACAAATGTCACATGTCAAAATAAA
AAATCTAAACAAATATGGCTGATTTCGATTCTTTCAATTGTTTTACAAGT
TTGTTTTGGACACGTGATCTTAATTGTTTCCTTTAATGACACGTGGTTCG
CGCAATGTTTACATTTTACTTTTTTATGTCCCTTTAAAAAACAGCCTTAA
AAACTCTCGGGTAAGTTATGGCATGTCTGAAAAACTGAAAATTACCATAA
TTTTTAGATCGCATTAGTCGACAGAAAATGACCAAACAAATGACTGAAAA
TGAAGGGTACTGTGATGAAGTTTCTAACCTGATGTGTAACCTAATTGTTT
TTTCGCTGATTTTCGCAAAAAACCTTAAAAACTGATTATGACGTCATAAT
CGATGACGTCATAAAAACTAAAAATTGAATTTCTCAAGAATGGTTTATCC
AATTGTCTTCAAACTTTCACCAAAGATGTATCTCACCAAAGTAAATCGTT
TGAAAAAATTAATTTTTCGAAATTTTCATGACGTCAGCAGAAATTAGGAA
AAAAGGAAAAAATCCTATTTTTTGCTGACGTAATCAGAATTTCGAAAAAA
GATTTTTTTTCAAATGATCGACTTTAGTGGGATACATCTTTGGTGAAAGT
TTGAGGATGATTGGATAAACAACCCTTGAGAAATTCAATTTTTAGTTTTT
ATGACGTCATCGATTATGACGTCATAATCAGTTTTTGCGGTTTTTCGCGA
AAATCGGCGTAAAAACAATTAGGTTACACATCAGGTTAGAAACTACATCA
TAGTACCCTTCATGTTCAGTCATTTGTTTGGTCGTTTTCTGTCGACTAGT
GCGATCTAAAAATTATGGTAATTTTAAGACATGCCATAACTTACCCGAGC
TAGCAGCTTAAAAAATCTTTCATTCAACACCAATGTGATTTTGTATAGTT
TGTAAGAATGTTTTTTATCTTTCTTAGAAAACGGAGGGTACAGTGATTGG
TTGAAATGGTCACCATGCAGTGTATCATGTGGCAAAGGAACAAGATCTAG
ACATCGTTATTGTGATAACCCAATCCCAATGTATGGTGGAGATAAATGTC
AAGGAGATGATAAAGAGACTGAAGAATGTGATATGGGACCTTGCCCAGGT
ACTTCAGTGTTTCTGGAAACTTTTCTTACTAAATTTTTAACAAACGAATT
TTAAGGAAACTGCACTTAAAATATCTATAACCCAATTCGTATCTGAACTT
GGAAAAGTCAACAATACTCCAGTTTGAAAAATTAAGAACCGCGTACTCAT
ATAACCTAATAAATGTGAATTCTTTTTTCAATCAAAAAATTCCCGAGGCA
CTCCGAAAATCAAACTCTTTCCCTATTTTTCCAGAAAAAGCAACCCTCGG
TGAATATGAAGATATTGGGAAATGCTCCAAACCATGTGGCGGGGGCGTTC
AAAAAAGACAACGAAAATGTTTACCGCCCATCAATCCATACTACAAGAAA
TGCTACGTTGATTGTCCAAAAGATCGCGATGAGATTACTGAGCCTTGCAA
CACTCATAAATGCAAACAAGAAGGTAGGTCTTACTCCACCCTTTCAACAT
GAAACTTTTGTTCTCCTTCAGAAACCAGCATCCAAGGGCTCTGACTTGGT
CTTTACAAGTTTAAGCGTGTAGGTATACCTAAGCTTTTAGGAACGTTAGT
CTTATAAATTTAAACTACGTGAAATTAATGTTTGAAAATTTTCTAAAAGT
TGTCAAACTCGAAATATTATTTTCTGATTAAGCGATCATGAAAAACTGAA
TGCATCACTTGAACCTTAAAACCATTTCATTCAAAAGATTTTCTCCCGAT
GGTTTACCTTTTCATAAATTCTCCATTCCATACTTTTCATTTAGTTGGTA
ATGAATGCCAAGGATGTAAACGACAAGCCAATTATGACGCCGCCAGAAAC
GGCAAACCCGAATTCGTCGGTCATGCTTGCCGTACGTCAAATAAATTCTG
TGAAGGACGAACGAAAGGTATTAAAGCTATGTACGCACAAAATGATTGGT
TCTTTTTACACTGTGCACCAGATGGCTCTTGGTGTAAACCATGCGCTACC
AGAGGATTGGTTTATAACCCTGAATGTGGAAATTGCGAAGTGAAGAGGTC
TGGAGTCAAATGTACTGATGCTGGTAAGACATTGTATATTCATTTATCCG
AGGGGGGGGGTCTGAATAACTCGACCAACCACAGGGGAATTAGAAATGTT
CGAGTTATAGAGATTCGAGTTTTGGCTATTTAAGGGTTTGTTATCTCTAG
CTTGATGGGTGAGACCAGAAATTAAAGAGAAATTCGAAGTATAGAGGTTC
GAGTTATAGAGATTCTACCGTATTTGAAGAATTTTTCCTGGAGTATCTTT
CAAAAAGCATACTTTCCCTTCCCCTTTCATATCAAAAATTGAAATATTAT
TATTGCTCGTTTTGCAAATTTTCTATTTCCTCTAACTTCAATATAAATTA
CTCATCACGCCCCTCTTCATGGCTTTTAACTGTGTTGAACCCTGGCCACA
ATTTTTGAAATTTCAAAGCATTTGGCATTTCTAGGAGCTTAAGAAATATC
GACACAAATGGCTTTGTTTTTTCTCCATCCTGGCCATATCTATATCCTAT
TTACTCTAATAATTTATTTTCCCATCTATCATCAACAGGTACTTGGGATA
AAACGCGAGCTCAAAAAGACGTTTTGAATGATGAAGAACTCTGGTAAACT
TGAAAAATAACCAACCAATTGTTTTCGACAATTTTATCACGTGATCAATA
TCTCCCCCGAGATTCATGATTTATGATTTATTCAAACATTCGAAGCATCG
AATGCACAGGGAGGAAGATTGACTGTTAATTTTACAGTTTCTAATTTCAT
CTTTTTTAACTCTTTATATCGTATTTCTAATTTTTGTCTAGACTTTATTT
CTAAAG

Coding sequence (CDS) from alignment at scaffold_239:57025..60730-

>TCONS_00054066 ID=TCONS_00054066|Name=TCONS_00054066|organism=Clytia hemisphaerica|type=CDS|length=5256bp|location=Sequence derived from alignment at scaffold_239:57025..60730- (Clytia hemisphaerica)
GTACTTGGGATAAAACGCGAGCTCAAAAAGACGTTTTGAATGATGAAGAA
CTCTGGTAATTGGTAATGAATGCCAAGGATGTAAACGACAAGCCAATTAT
GACGCCGCCAGAAACGGCAAACCCGAATTCGTCGGTCATGCTTGCCGTAC
GTCAAATAAATTCTGTGAAGGACGAACGAAAGGTATTAAAGCTATGTACG
CACAAAATGATTGGTTCTTTTTACACTGTGCACCAGATGGCTCTTGGTGT
AAACCATGCGCTACCAGAGGATTGGTTTATAACCCTGAATGTGGAAATTG
CGAAGTGAAGAGGTCTGGAGTCAAATGTACTGATGCTGAAAAAGCAACCC
TCGGTGAATATGAAGATATTGGGAAATGCTCCAAACCATGTGGCGGGGGC
GTTCAAAAAAGACAACGAAAATGTTTACCGCCCATCAATCCATACTACAA
GAAATGCTACGTTGATTGTCCAAAAGATCGCGATGAGATTACTGAGCCTT
GCAACACTCATAAATGCAAACAAGAAGAAAACGGAGGGTACAGTGATTGG
TTGAAATGGTCACCATGCAGTGTATCATGTGGCAAAGGAACAAGATCTAG
ACATCGTTATTGTGATAACCCAATCCCAATGTATGGTGGAGATAAATGTC
AAGGAGATGATAAAGAGACTGAAGAATGTGATATGGGACCTTGCCCAGAT
GAATACCCTTTTAGCCTTGGTGGTTTTATGTTTGGCTGCAGTCAATTCAA
CAAAAATCGAAAAATGTATCCGACGAACGCTATTGTATAAATACTGGCGT
ATTTCGAGAAGAACATCATTCAAAAAAAGAATTTGAGAAAGATTTTCAAG
GAATAAGCAAAGCAAATAGTTACAAGGTACTTGGGATAAAACGCGAGCTC
AAAAAGACGTTTTGAATGATGAAGAACTCTGGTAATTGGTAATGAATGCC
AAGGATGTAAACGACAAGCCAATTATGACGCCGCCAGAAACGGCAAACCC
GAATTCGTCGGTCATGCTTGCCGTACGTCAAATAAATTCTGTGAAGGACG
AACGAAAGGTATTAAAGCTATGTACGCACAAAATGATTGGTTCTTTTTAC
ACTGTGCACCAGATGGCTCTTGGTGTAAACCATGCGCTACCAGAGGATTG
GTTTATAACCCTGAATGTGGAAATTGCGAAGTGAAGAGGTCTGGAGTCAA
ATGTACTGATGCTGAAAAAGCAACCCTCGGTGAATATGAAGATATTGGGA
AATGCTCCAAACCATGTGGCGGGGGCGTTCAAAAAAGACAACGAAAATGT
TTACCGCCCATCAATCCATACTACAAGAAATGCTACGTTGATTGTCCAAA
AGATCGCGATGAGATTACTGAGCCTTGCAACACTCATAAATGCAAACAAG
AAGAAAACGGAGGGTACAGTGATTGGTTGAAATGGTCACCATGCAGTGTA
TCATGTGGCAAAGGAACAAGATCTAGACATCGTTATTGTGATAACCCAAT
CCCAATGTATGGTGGAGATAAATGTCAAGGAGATGATAAAGAGACTGAAG
AATGTGATATGGGACCTTGCCCAGATGAATACCCTTTTAGCCTTGGTGGT
TTTATGTTTGGCTGCAGTCAATTCAACAAAAATCGAAAAATGTATCCGAC
GAACGCTATTGTATAAATACTGGCGTATTTCGAGAAGAACATCATTCAAA
AAAAGAATTTGAGAAAGATTTTCAAGGAATAAGCAAAGCAAATAGTTACA
AGGTACTTGGGATAAAACGCGAGCTCAAAAAGACGTTTTGAATGATGAAG
AACTCTGGTAATTGGTAATGAATGCCAAGGATGTAAACGACAAGCCAATT
ATGACGCCGCCAGAAACGGCAAACCCGAATTCGTCGGTCATGCTTGCCGT
ACGTCAAATAAATTCTGTGAAGGACGAACGAAAGGTATTAAAGCTATGTA
CGCACAAAATGATTGGTTCTTTTTACACTGTGCACCAGATGGCTCTTGGT
GTAAACCATGCGCTACCAGAGGATTGGTTTATAACCCTGAATGTGGAAAT
TGCGAAGTGAAGAGGTCTGGAGTCAAATGTACTGATGCTGAAAAAGCAAC
CCTCGGTGAATATGAAGATATTGGGAAATGCTCCAAACCATGTGGCGGGG
GCGTTCAAAAAAGACAACGAAAATGTTTACCGCCCATCAATCCATACTAC
AAGAAATGCTACGTTGATTGTCCAAAAGATCGCGATGAGATTACTGAGCC
TTGCAACACTCATAAATGCAAACAAGAAGAAAACGGAGGGTACAGTGATT
GGTTGAAATGGTCACCATGCAGTGTATCATGTGGCAAAGGAACAAGATCT
AGACATCGTTATTGTGATAACCCAATCCCAATGTATGGTGGAGATAAATG
TCAAGGAGATGATAAAGAGACTGAAGAATGTGATATGGGACCTTGCCCAG
ATGAATACCCTTTTAGCCTTGGTGGTTTTATGTTTGGCTGCAGTCAATTC
AACAAAAATCGAAAAATGTATCCGACGAACGCTATTGTATAAATACTGGC
GTATTTCGAGAAGAACATCATTCAAAAAAAGAATTTGAGAAAGATTTTCA
AGGAATAAGCAAAGCAAATAGTTACAAGGTACTTGGGATAAAACGCGAGC
TCAAAAAGACGTTTTGAATGATGAAGAACTCTGGTAATTGGTAATGAATG
CCAAGGATGTAAACGACAAGCCAATTATGACGCCGCCAGAAACGGCAAAC
CCGAATTCGTCGGTCATGCTTGCCGTACGTCAAATAAATTCTGTGAAGGA
CGAACGAAAGGTATTAAAGCTATGTACGCACAAAATGATTGGTTCTTTTT
ACACTGTGCACCAGATGGCTCTTGGTGTAAACCATGCGCTACCAGAGGAT
TGGTTTATAACCCTGAATGTGGAAATTGCGAAGTGAAGAGGTCTGGAGTC
AAATGTACTGATGCTGAAAAAGCAACCCTCGGTGAATATGAAGATATTGG
GAAATGCTCCAAACCATGTGGCGGGGGCGTTCAAAAAAGACAACGAAAAT
GTTTACCGCCCATCAATCCATACTACAAGAAATGCTACGTTGATTGTCCA
AAAGATCGCGATGAGATTACTGAGCCTTGCAACACTCATAAATGCAAACA
AGAAGAAAACGGAGGGTACAGTGATTGGTTGAAATGGTCACCATGCAGTG
TATCATGTGGCAAAGGAACAAGATCTAGACATCGTTATTGTGATAACCCA
ATCCCAATGTATGGTGGAGATAAATGTCAAGGAGATGATAAAGAGACTGA
AGAATGTGATATGGGACCTTGCCCAGATGAATACCCTTTTAGCCTTGGTG
GTTTTATGTTTGGCTGCAGTCAATTCAACAAAAATCGAAAAATGTATCCG
ACGAACGCTATTGTATAAATACTGGCGTATTTCGAGAAGAACATCATTCA
AAAAAAGAATTTGAGAAAGATTTTCAAGGAATAAGCAAAGCAAATAGTTA
CAAGGTACTTGGGATAAAACGCGAGCTCAAAAAGACGTTTTGAATGATGA
AGAACTCTGGTAATTGGTAATGAATGCCAAGGATGTAAACGACAAGCCAA
TTATGACGCCGCCAGAAACGGCAAACCCGAATTCGTCGGTCATGCTTGCC
GTACGTCAAATAAATTCTGTGAAGGACGAACGAAAGGTATTAAAGCTATG
TACGCACAAAATGATTGGTTCTTTTTACACTGTGCACCAGATGGCTCTTG
GTGTAAACCATGCGCTACCAGAGGATTGGTTTATAACCCTGAATGTGGAA
ATTGCGAAGTGAAGAGGTCTGGAGTCAAATGTACTGATGCTGAAAAAGCA
ACCCTCGGTGAATATGAAGATATTGGGAAATGCTCCAAACCATGTGGCGG
GGGCGTTCAAAAAAGACAACGAAAATGTTTACCGCCCATCAATCCATACT
ACAAGAAATGCTACGTTGATTGTCCAAAAGATCGCGATGAGATTACTGAG
CCTTGCAACACTCATAAATGCAAACAAGAAGAAAACGGAGGGTACAGTGA
TTGGTTGAAATGGTCACCATGCAGTGTATCATGTGGCAAAGGAACAAGAT
CTAGACATCGTTATTGTGATAACCCAATCCCAATGTATGGTGGAGATAAA
TGTCAAGGAGATGATAAAGAGACTGAAGAATGTGATATGGGACCTTGCCC
AGATGAATACCCTTTTAGCCTTGGTGGTTTTATGTTTGGCTGCAGTCAAT
TCAACAAAAATCGAAAAATGTATCCGACGAACGCTATTGTATAAATACTG
GCGTATTTCGAGAAGAACATCATTCAAAAAAAGAATTTGAGAAAGATTTT
CAAGGAATAAGCAAAGCAAATAGTTACAAGGTACTTGGGATAAAACGCGA
GCTCAAAAAGACGTTTTGAATGATGAAGAACTCTGGTAATTGGTAATGAA
TGCCAAGGATGTAAACGACAAGCCAATTATGACGCCGCCAGAAACGGCAA
ACCCGAATTCGTCGGTCATGCTTGCCGTACGTCAAATAAATTCTGTGAAG
GACGAACGAAAGGTATTAAAGCTATGTACGCACAAAATGATTGGTTCTTT
TTACACTGTGCACCAGATGGCTCTTGGTGTAAACCATGCGCTACCAGAGG
ATTGGTTTATAACCCTGAATGTGGAAATTGCGAAGTGAAGAGGTCTGGAG
TCAAATGTACTGATGCTGAAAAAGCAACCCTCGGTGAATATGAAGATATT
GGGAAATGCTCCAAACCATGTGGCGGGGGCGTTCAAAAAAGACAACGAAA
ATGTTTACCGCCCATCAATCCATACTACAAGAAATGCTACGTTGATTGTC
CAAAAGATCGCGATGAGATTACTGAGCCTTGCAACACTCATAAATGCAAA
CAAGAAGAAAACGGAGGGTACAGTGATTGGTTGAAATGGTCACCATGCAG
TGTATCATGTGGCAAAGGAACAAGATCTAGACATCGTTATTGTGATAACC
CAATCCCAATGTATGGTGGAGATAAATGTCAAGGAGATGATAAAGAGACT
GAAGAATGTGATATGGGACCTTGCCCAGATGAATACCCTTTTAGCCTTGG
TGGTTTTATGTTTGGCTGCAGTCAATTCAACAAAAATCGAAAAATGTATC
CGACGAACGCTATTGTATAAATACTGGCGTATTTCGAGAAGAACATCATT
CAAAAAAAGAATTTGAGAAAGATTTTCAAGGAATAAGCAAAGCAAATAGT
TACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034122XLOC_034122Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054066-proteinTCONS_00054066-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054066-exon-scaffold_239-1575043694:60629..60730TCONS_00054066-exon-scaffold_239-1575043694:60629..60730Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1575043694:60301..60376TCONS_00054066-exon-scaffold_239-1575043694:60301..60376Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1575043694:58833..59003TCONS_00054066-exon-scaffold_239-1575043694:58833..59003Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1575043694:58408..58596TCONS_00054066-exon-scaffold_239-1575043694:58408..58596Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1575043694:57808..58086TCONS_00054066-exon-scaffold_239-1575043694:57808..58086Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1575043694:57025..57292TCONS_00054066-exon-scaffold_239-1575043694:57025..57292Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1510915933:60629..60730TCONS_00054066-exon-scaffold_239-1510915933:60629..60730Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1510915933:60301..60376TCONS_00054066-exon-scaffold_239-1510915933:60301..60376Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1510915933:58833..59003TCONS_00054066-exon-scaffold_239-1510915933:58833..59003Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1510915933:58408..58596TCONS_00054066-exon-scaffold_239-1510915933:58408..58596Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1510915933:57808..58086TCONS_00054066-exon-scaffold_239-1510915933:57808..58086Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1510915933:57025..57292TCONS_00054066-exon-scaffold_239-1510915933:57025..57292Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1491911889:60629..60730TCONS_00054066-exon-scaffold_239-1491911889:60629..60730Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1491911889:60301..60376TCONS_00054066-exon-scaffold_239-1491911889:60301..60376Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1491911889:58833..59003TCONS_00054066-exon-scaffold_239-1491911889:58833..59003Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1491911889:58408..58596TCONS_00054066-exon-scaffold_239-1491911889:58408..58596Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1491911889:57808..58086TCONS_00054066-exon-scaffold_239-1491911889:57808..58086Clytia hemisphaericaexon
TCONS_00054066-exon-scaffold_239-1491911889:57025..57292TCONS_00054066-exon-scaffold_239-1491911889:57025..57292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_239supercontigscaffold_239:57025..60730 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0404997	0	0	0	0.109232	0.0431584	0.208275	0.0974923	5.35815	14.2461	0.615474	8.63123	77.6538	16.3359	133.038	222.411	0.456045	0.373945	0.172208	0.0901018	0.117472	0	0.0464362	0	0	0	0.0555331	0	0.0449515	0.091597
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
[Close]
BLAST of TCONS_00054066 vs. Swiss-Prot (Human)
Match: TSP2 (Thrombospondin-2 OS=Homo sapiens GN=THBS2 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 5.160e-18
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 1 
Query:  154 TKIEKCIRQNGGYSDWLKWSPCSVSCGKGTRSRHRYCDNPIPMYGGDKCQGDDKETEECDMGPCPEKATLGEYEDIGKCSKPCGGGVQKRQRKCLPPINPYYKKCYVDCPKDRDEITEPCNTHKC 528
            +K +  IRQ+GG+S W  WS CSV+CG G  +R R C++P+P  GG  C+G  +ET+ C   PCP       +     C+  C GG+++R R C  P   Y  K  V   ++R    + CN   C
Sbjct:  428 SKCDTRIRQDGGWSHWSPWSSCSVTCGVGNITRIRLCNSPVPQMGGKNCKGSGRETKACQGAPCPIDGRWSPWSPWSACTVTCAGGIRERTRVCNSPEPQYGGKACVGDVQER----QMCNKRSC 548
The following BLAST results are available for this feature:
BLAST of TCONS_00054066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSP25.160e-1836.80Thrombospondin-2 OS=Homo sapiens GN=THBS2 PE=1 SV=... [more]
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