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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054205 ID=TCONS_00054205|Name=TCONS_00054205|organism=Clytia hemisphaerica|type=transcript|length=1256bp
TAATATCGTCAAAGACTTGTTTATAGCGTGTTGGAGCTATCTAACTGAAG
ATGAATTCATTAACGAATATGgTGACTTCCCTGATCTCAAGCACTTATGG
CGAAGACGGGCATCTATCGAGACGTATTACTCACACAGCACTGACGTTCT
TCGCTACTGCCTTACTGCAAGCTGTTTtccaaaaatacatttttcattGC
CCTGATAAAGACTGGATCTCTTTCTCGTACATGTGTTTTTTTATTCCGGC
GATACCCTTGTTAGTAACAGGATGGCTATCGAATACAGAATTCCAAAAAT
CGATTCGTGGGATACTCCATGGCTGTTGGAATCGAGAAGAACGAAAGCGC
ACCCGTCTTCTGGTCCAATGGCGTCATCTTTTCTTCACAATCATCAAAAG
TCACGTATCAGCGTACGTTGCGCCTTTCTCCTGGTTCATGATGTGTCTAC
TGAACCGTGATATAATGACGTGCGCTGTTTACGGGCCACCAAGTAATCAA
ACAACGTACGTTAGACGGAAATACGAAACACTTGCAGTTTACTCACAATT
GATTGGCTTTGATATGCTTGTTGCTGGTACTTGTATTTTGGCCATTATTA
TAACAATCAAACAATGTTTCAGGAGAGCAAACCCAGGGAAAGacaTCGTT
GAATTTCAATGTCTCGATAATTACGCATCATACGAAGCAGACGCTGCTCG
TAAATACTTCGAAGACGCATTACGCGCACAAGCAGAAGAAAATGGACGTC
GTAAAGCGCAAATGCTGCTCGATGCTCGGAAACCAAATCTCGATAATTTA
GATGGATTCGAAAAGGCGATGGGCGAAATGTCTTACGAGCACTATGCATC
TGTTCGAAACGCACTTATGCAAATTTACCCGAAAACTGATAACCCCTCTG
ATCGCAAGGTGCAGTATTATACTATTGACGCTTTTCATGAAGAAGCGAGA
GTCTTTCGAAAACATCTAGAAGGCGTTTCACCACAAGAGCCGAATAGTAT
CGAGCTAGGATTAACTAAGGATGGAGAGAAAATCCATTTGATAAATATGg
acgaaaaacataaaaaatataatgttTGAAGAATCACCTCCCAATTATAA
CGAAAGATTGAATATAGACTTATGGACACGATATAGGCTCGGTGACTATT
TTCGTATCGAGACAAGATGACCTATTTTTTGGACCttcctaaggtagtcc
tttaaattaacccttgtccgttcgttcgttcgttcgttcgtccgttcgtt
cgttcg Run BLAST on NCBI transcript from alignment at scaffold_242:438696..440240+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054205 ID=TCONS_00054205|Name=TCONS_00054205|organism=Clytia hemisphaerica|type=transcript|length=1545bp|location=Sequence derived from alignment at scaffold_242:438696..440240+ (Clytia hemisphaerica)
TAATATCGTCAAAGACTTGTTTATAGCGTGTTGGAGCTATCTAACTGAAG
ATGAATTCATTAACGAATATGGTAAACATATTTTTCAGACTTTCAAATGT
AATACTGGTTATAGATTCATTTATTCCCCTAGTTGACGATGcgatatttt
ttcttcttaggTGACTTCCCTGATCTCAAGCACTTATGGCGAAGACGGGC
ATCTATCGAGACGTATTACTCACACAGCACTGACGTTCTTCGCTACTGCC
TTACTGCAAGCTGTTTtccaaaaatacatttttcattGCCCTGATAAAGA
CTGGATCTCTTTCTCGTACATGTGTTTTTTTATTCCGGCGATACCCTTGT
TAGTAACAGGATGGCTATCGAATACAGAATTCCAAAAATCGATTCGTGGG
ATACTCCATGGCTGTTGGAATCGAGAAGAACGAAAGCGCACCCGTCTTCT
GGTCCAATGGCGTCATCTTTTCTTCACAATCATCAAAAGTCACGTATCAG
CGTACGTTGCGCCTTTCTCCTGGTTCATGATGTGTCTACTGAACCGTGAT
ATAATGACGTGCGCTGTTTACGGGCCACCAAGTAATCAAACAACGTACGT
TAGACGGAAATACGAAACACTTGCAGTTTACTCACAATTGATTGGCTTTG
ATATGCTTGTTGCTGGTACTTGTATTTTGGCCATTATTATAACAATCAAA
CAATGTTTCAGGAGAGCAAACCCAGGGAAAGGTAagcttttcttcatttt
tcatcacattttaaaaaatgttgctTGATTACCATCGAGAGTTTTGTAAA
ATGCTGTTTTTAAACCCCGactatttgtttacatttattaAAGGTTACTG
CTTATTGTTAGAAATTCTTTGAAGCAAGTTAAGAGATTTCTAGCTAGCTT
TTCAATTTGTTCTtcccttttttcttttcagacaTCGTTGAATTTCAATG
TCTCGATAATTACGCATCATACGAAGCAGACGCTGCTCGTAAATACTTCG
AAGACGCATTACGCGCACAAGCAGAAGAAAATGGACGTCGTAAAGCGCAA
ATGCTGCTCGATGCTCGGAAACCAAATCTCGATAATTTAGATGGATTCGA
AAAGGCGATGGGCGAAATGTCTTACGAGCACTATGCATCTGTTCGAAACG
CACTTATGCAAATTTACCCGAAAACTGATAACCCCTCTGATCGCAAGGTG
CAGTATTATACTATTGACGCTTTTCATGAAGAAGCGAGAGTCTTTCGAAA
ACATCTAGAAGGCGTTTCACCACAAGAGCCGAATAGTATCGAGCTAGGAT
TAACTAAGGATGGAGAGAAAATCCATTTGATAAATATGgacgaaaaacat
aaaaaatataatgttTGAAGAATCACCTCCCAATTATAACGAAAGATTGA
ATATAGACTTATGGACACGATATAGGCTCGGTGACTATTTTCGTATCGAG
ACAAGATGACCTATTTTTTGGACCttcctaaggtagtcctttaaattaac
ccttgtccgttcgttcgttcgttcgttcgtccgttcgttcgttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054205-exon-scaffold_242-1491911889:438696..438766 | TCONS_00054205-exon-scaffold_242-1491911889:438696..438766 | Clytia hemisphaerica | exon |
| TCONS_00054205-exon-scaffold_242-1510915933:438696..438766 | TCONS_00054205-exon-scaffold_242-1510915933:438696..438766 | Clytia hemisphaerica | exon |
| TCONS_00054205-exon-scaffold_242-1575043694:438696..438766 | TCONS_00054205-exon-scaffold_242-1575043694:438696..438766 | Clytia hemisphaerica | exon |
| TCONS_00054205-exon-scaffold_242-1491911889:438856..439426 | TCONS_00054205-exon-scaffold_242-1491911889:438856..439426 | Clytia hemisphaerica | exon |
| TCONS_00054205-exon-scaffold_242-1510915933:438856..439426 | TCONS_00054205-exon-scaffold_242-1510915933:438856..439426 | Clytia hemisphaerica | exon |
| TCONS_00054205-exon-scaffold_242-1575043694:438856..439426 | TCONS_00054205-exon-scaffold_242-1575043694:438856..439426 | Clytia hemisphaerica | exon |
| TCONS_00054205-exon-scaffold_242-1491911889:439627..440240 | TCONS_00054205-exon-scaffold_242-1491911889:439627..440240 | Clytia hemisphaerica | exon |
| TCONS_00054205-exon-scaffold_242-1510915933:439627..440240 | TCONS_00054205-exon-scaffold_242-1510915933:439627..440240 | Clytia hemisphaerica | exon |
| TCONS_00054205-exon-scaffold_242-1575043694:439627..440240 | TCONS_00054205-exon-scaffold_242-1575043694:439627..440240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:438696..440240 + |
Blast
The following BLAST results are available for this feature:
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