TCONS_00054205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054205
Unique NameTCONS_00054205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054205 ID=TCONS_00054205|Name=TCONS_00054205|organism=Clytia hemisphaerica|type=transcript|length=1256bp
TAATATCGTCAAAGACTTGTTTATAGCGTGTTGGAGCTATCTAACTGAAG
ATGAATTCATTAACGAATATGgTGACTTCCCTGATCTCAAGCACTTATGG
CGAAGACGGGCATCTATCGAGACGTATTACTCACACAGCACTGACGTTCT
TCGCTACTGCCTTACTGCAAGCTGTTTtccaaaaatacatttttcattGC
CCTGATAAAGACTGGATCTCTTTCTCGTACATGTGTTTTTTTATTCCGGC
GATACCCTTGTTAGTAACAGGATGGCTATCGAATACAGAATTCCAAAAAT
CGATTCGTGGGATACTCCATGGCTGTTGGAATCGAGAAGAACGAAAGCGC
ACCCGTCTTCTGGTCCAATGGCGTCATCTTTTCTTCACAATCATCAAAAG
TCACGTATCAGCGTACGTTGCGCCTTTCTCCTGGTTCATGATGTGTCTAC
TGAACCGTGATATAATGACGTGCGCTGTTTACGGGCCACCAAGTAATCAA
ACAACGTACGTTAGACGGAAATACGAAACACTTGCAGTTTACTCACAATT
GATTGGCTTTGATATGCTTGTTGCTGGTACTTGTATTTTGGCCATTATTA
TAACAATCAAACAATGTTTCAGGAGAGCAAACCCAGGGAAAGacaTCGTT
GAATTTCAATGTCTCGATAATTACGCATCATACGAAGCAGACGCTGCTCG
TAAATACTTCGAAGACGCATTACGCGCACAAGCAGAAGAAAATGGACGTC
GTAAAGCGCAAATGCTGCTCGATGCTCGGAAACCAAATCTCGATAATTTA
GATGGATTCGAAAAGGCGATGGGCGAAATGTCTTACGAGCACTATGCATC
TGTTCGAAACGCACTTATGCAAATTTACCCGAAAACTGATAACCCCTCTG
ATCGCAAGGTGCAGTATTATACTATTGACGCTTTTCATGAAGAAGCGAGA
GTCTTTCGAAAACATCTAGAAGGCGTTTCACCACAAGAGCCGAATAGTAT
CGAGCTAGGATTAACTAAGGATGGAGAGAAAATCCATTTGATAAATATGg
acgaaaaacataaaaaatataatgttTGAAGAATCACCTCCCAATTATAA
CGAAAGATTGAATATAGACTTATGGACACGATATAGGCTCGGTGACTATT
TTCGTATCGAGACAAGATGACCTATTTTTTGGACCttcctaaggtagtcc
tttaaattaacccttgtccgttcgttcgttcgttcgttcgtccgttcgtt
cgttcg
Run BLAST on NCBI

transcript from alignment at scaffold_242:438696..440240+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054205 ID=TCONS_00054205|Name=TCONS_00054205|organism=Clytia hemisphaerica|type=transcript|length=1545bp|location=Sequence derived from alignment at scaffold_242:438696..440240+ (Clytia hemisphaerica)
TAATATCGTCAAAGACTTGTTTATAGCGTGTTGGAGCTATCTAACTGAAG ATGAATTCATTAACGAATATGGTAAACATATTTTTCAGACTTTCAAATGT AATACTGGTTATAGATTCATTTATTCCCCTAGTTGACGATGcgatatttt ttcttcttaggTGACTTCCCTGATCTCAAGCACTTATGGCGAAGACGGGC ATCTATCGAGACGTATTACTCACACAGCACTGACGTTCTTCGCTACTGCC TTACTGCAAGCTGTTTtccaaaaatacatttttcattGCCCTGATAAAGA CTGGATCTCTTTCTCGTACATGTGTTTTTTTATTCCGGCGATACCCTTGT TAGTAACAGGATGGCTATCGAATACAGAATTCCAAAAATCGATTCGTGGG ATACTCCATGGCTGTTGGAATCGAGAAGAACGAAAGCGCACCCGTCTTCT GGTCCAATGGCGTCATCTTTTCTTCACAATCATCAAAAGTCACGTATCAG CGTACGTTGCGCCTTTCTCCTGGTTCATGATGTGTCTACTGAACCGTGAT ATAATGACGTGCGCTGTTTACGGGCCACCAAGTAATCAAACAACGTACGT TAGACGGAAATACGAAACACTTGCAGTTTACTCACAATTGATTGGCTTTG ATATGCTTGTTGCTGGTACTTGTATTTTGGCCATTATTATAACAATCAAA CAATGTTTCAGGAGAGCAAACCCAGGGAAAGGTAagcttttcttcatttt tcatcacattttaaaaaatgttgctTGATTACCATCGAGAGTTTTGTAAA ATGCTGTTTTTAAACCCCGactatttgtttacatttattaAAGGTTACTG CTTATTGTTAGAAATTCTTTGAAGCAAGTTAAGAGATTTCTAGCTAGCTT TTCAATTTGTTCTtcccttttttcttttcagacaTCGTTGAATTTCAATG TCTCGATAATTACGCATCATACGAAGCAGACGCTGCTCGTAAATACTTCG AAGACGCATTACGCGCACAAGCAGAAGAAAATGGACGTCGTAAAGCGCAA ATGCTGCTCGATGCTCGGAAACCAAATCTCGATAATTTAGATGGATTCGA AAAGGCGATGGGCGAAATGTCTTACGAGCACTATGCATCTGTTCGAAACG CACTTATGCAAATTTACCCGAAAACTGATAACCCCTCTGATCGCAAGGTG CAGTATTATACTATTGACGCTTTTCATGAAGAAGCGAGAGTCTTTCGAAA ACATCTAGAAGGCGTTTCACCACAAGAGCCGAATAGTATCGAGCTAGGAT TAACTAAGGATGGAGAGAAAATCCATTTGATAAATATGgacgaaaaacat aaaaaatataatgttTGAAGAATCACCTCCCAATTATAACGAAAGATTGA ATATAGACTTATGGACACGATATAGGCTCGGTGACTATTTTCGTATCGAG ACAAGATGACCTATTTTTTGGACCttcctaaggtagtcctttaaattaac ccttgtccgttcgttcgttcgttcgttcgtccgttcgttcgttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034190XLOC_034190Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054205-exon-scaffold_242-1491911889:438696..438766TCONS_00054205-exon-scaffold_242-1491911889:438696..438766Clytia hemisphaericaexon
TCONS_00054205-exon-scaffold_242-1510915933:438696..438766TCONS_00054205-exon-scaffold_242-1510915933:438696..438766Clytia hemisphaericaexon
TCONS_00054205-exon-scaffold_242-1575043694:438696..438766TCONS_00054205-exon-scaffold_242-1575043694:438696..438766Clytia hemisphaericaexon
TCONS_00054205-exon-scaffold_242-1491911889:438856..439426TCONS_00054205-exon-scaffold_242-1491911889:438856..439426Clytia hemisphaericaexon
TCONS_00054205-exon-scaffold_242-1510915933:438856..439426TCONS_00054205-exon-scaffold_242-1510915933:438856..439426Clytia hemisphaericaexon
TCONS_00054205-exon-scaffold_242-1575043694:438856..439426TCONS_00054205-exon-scaffold_242-1575043694:438856..439426Clytia hemisphaericaexon
TCONS_00054205-exon-scaffold_242-1491911889:439627..440240TCONS_00054205-exon-scaffold_242-1491911889:439627..440240Clytia hemisphaericaexon
TCONS_00054205-exon-scaffold_242-1510915933:439627..440240TCONS_00054205-exon-scaffold_242-1510915933:439627..440240Clytia hemisphaericaexon
TCONS_00054205-exon-scaffold_242-1575043694:439627..440240TCONS_00054205-exon-scaffold_242-1575043694:439627..440240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:438696..440240 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
290.105 255.888 246.978 275.929 5.76103 6.83531 5.82087 8.01682 8.5551 5.51293 20.2992 11.0882 23.892 31.8361 4.79087 4.03975 3.05742 3.93612 55.8867 39.2724 5.81113 2.37456 175.362 142.42 1.67008 2.86688 50.4161 31.9448 89.0654 74.2029
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top