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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054222 ID=TCONS_00054222|Name=TCONS_00054222|organism=Clytia hemisphaerica|type=transcript|length=1780bp
ttttagaatttttttgttatCAATTTCAATCTTTTGTTTAGTACTTTATT
TGTTGAATAGAGGAAGACAAGCACAGCAGTTAGTTAAGCGCCTTTTCTTC
AGCGTAAACACCTGTTGGACCCTTAAATCTACTCTACACACCACGCCAAC
TGGGTATTTGACGACTATCCATCCTTCGCTGAAGTCGATTTGTTAACAAA
AAGATAAGTAGATACAATTTCTCTCTTTTAAGTGAAATTgagaaattgag
ttttctgaCCGACATCATCCAACGGCTGTAAACCATCTTGTTCACTAACG
AAATTTACTTCGAAAAAGGAATTGAGATAATTTCATCAAGCTTCAAATAT
ACAGTTAACCCCGTTTTTATATATGGACACAGTGTATAACTGAGTTTGTT
TTTTGACATATTGTCTTTGTGTGGTATCCCATCGACAGACTATAAATTGA
GAAGTTTTCATAGCATTATTATATTCAGACATTATCAGAGCAATGGAAAG
AGTTATGGATCCTGATGCCATGTTTCTACCACACGAAAACAGTGACCTCA
AGTACCGGCATCACGAAAAGATTGCACAACCACCAAAAACGCGACGATAT
TTAATGGACGAGAAATTTTTACGGAAATCGACATCTTTTGATATACGTGG
ACATCATCGCTCCGAACATCGTCCAGTATGTGACATTCCTCTTGTGTATG
ATCCAATGCGTGATTGCGGGCCGCGAGCACAATGGCACGGGGCACCGTCG
CACGTTCACGGAAGCTATATTAAACAAGAATATGATACTTTCGAAACAAA
TGAGGATGTCTACATGTTACCAAAACGCTCGAATTCAACCTCCCCGACAT
CAAATATGAGACGACATTTATCAAACACGCCCCCGTTATCATCGACCCCG
CCCTCTGCCACGCCATCCTCTCAAAGTTCGACATCAGCAGACTCTTTCAG
CATCAAACACAttctaaaaaaagagaaatcacAACCTTTACAAACAGACT
ACCAAATCGATCACAAAAGACGCTATTCCTCGTCCCTCTCGCCTCCAACA
TTCTACCACGACAAATTATCACCTATTACAACTTGTCTACCATCTCCCAG
CAATTACTATGGCAACTATCGAGCATCACAATTATTCGATGACGATCGCT
ACTTCCCATCCAAATACAATACAATGGGATGTCGTAAATATCATAAATTA
CCGCCCTTTTTGGAACATAGTCGATTCATATCATCACCACCCTTACCGCC
CTCTTCCCACCATTTGGATAGGTTACATCTCTCAGCGAACGCATATACAA
AAGataacatcgGAAAACGCGCCCATCGAATAGAAGGAAGATCATCAAAA
GATGGACACTCTATCAAAACGAAAAGTACTCGTCTAACATCCAGCGGTAA
AAAGCGTCGCCGCCACCGCACTGCATTTACGCCAACACAATTGTTAGGGT
TGGAGAATTCATTTGAGCGTGGTCACTATCTGGTGGGTGACGAAAGGAAA
CAATTGGCTGCTTTCCTGAGACTCAGTGAAACACAAATTAAAGTATGGTT
TCAAAACCGTCGTACGAAATACAAACGACAACGAAATGCAATGTACGAAA
ATAATGGCGTTTTATCGGACGGCTCTGATTATTCGGACATCGGCgaagaa
gaagaggaagaatgtgtatgatgaaatttttattgatttctttttttgtt
atgttttgtAAATATTCTTGtaaaattattaatttatttataaTTTGTTG
ACAATTTGTAAAAGCCGTAAAAGAGTTgca Run BLAST on NCBI protein sequence of TCONS_00054222-protein >TCONS_00054222-protein ID=TCONS_00054222-protein|Name=TCONS_00054222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp
MERVMDPDAMFLPHENSDLKYRHHEKIAQPPKTRRYLMDEKFLRKSTSFD
IRGHHRSEHRPVCDIPLVYDPMRDCGPRAQWHGAPSHVHGSYIKQEYDTF
ETNEDVYMLPKRSNSTSPTSNMRRHLSNTPPLSSTPPSATPSSQSSTSAD
SFSIKHILKKEKSQPLQTDYQIDHKRRYSSSLSPPTFYHDKLSPITTCLP
SPSNYYGNYRASQLFDDDRYFPSKYNTMGCRKYHKLPPFLEHSRFISSPP
LPPSSHHLDRLHLSANAYTKDNIGKRAHRIEGRSSKDGHSIKTKSTRLTS
SGKKRRRHRTAFTPTQLLGLENSFERGHYLVGDERKQLAAFLRLSETQIK
VWFQNRRTKYKRQRNAMYENNGVLSDGSDYSDIGEEEEEECV Run BLAST on NCBI transcript from alignment at scaffold_242:588258..592248+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054222 ID=TCONS_00054222|Name=TCONS_00054222|organism=Clytia hemisphaerica|type=transcript|length=3991bp|location=Sequence derived from alignment at scaffold_242:588258..592248+ (Clytia hemisphaerica)
ttttagaatttttttgttatCAATTTCAATCTTTTGTTTAGTACTTTATT
TGTTGAATAGAGGAAGACAAGCACAGCAGTTAGTTAAGCGCCTTTTCTTC
AGCGTAAACACCTGTTGGACCCTTAAATCTACTCTACACACCACGCCAAC
TGGGTATTTGACGACTATCCATCCTTCGCTGAAGTCGATTTGTTAACAAA
AAGATAAGTAGATACAATTTCTCTCTTTTAAGTGAAATTgagaaattgag
ttttctgaCCGACATCATCCAACGGCTGTAAACCATCTTGTTCACTAACG
AAATTTACTTCGAAAAAGGAATTGAGATAATTTCATCAAGCTTCAAATAT
ACAGTTAACCCCGTTTTTATATATGGACACAGTGTATAACTGAGTTTGTT
TTTTGACATATTGTCTTTGTGTGGTATCCCATCGACAGACTATAAATTGA
GAAGTTTTCATAGCATTATTATATTCAGACATTATCAGAGCAATGGAAAG
AGTTATGGATCCTGATGCCATGTTTCTACCACACGAAAACAGTGACCTCA
AGTACCGGCATCACGAAAAGATTGCACAACCACCAAAAACGCGACGATAT
TTAATGGACGAGAAATTTTTACGGAAATCGACATCTTTTGATATACGTGG
ACATCATCGCTCCGAACATCGTCCAGTATGTGACATTCCTCTTGTGTATG
ATCCAATGCGTGATTGCGGGCCGCGAGCACAATGGCACGGGGCACCGTCG
CACGTTCACGGAAGCTATATTAAACAAGAATATGATACTTTCGAAACAAA
TGAGGATGTCTACATGTTACCAAAACGCTCGAATTCAACCTCCCCGACAT
CAAATATGAGACGACATTTATCAAACACGCCCCCGTTATCATCGACCCCG
CCCTCTGCCACGCCATCCTCTCAAAGGTAAACGTCATTATTCATCAGTTT
AAATATATCTCTGGGGAACTGAAAATAATCTATTCCTCTTGTAAGTAAGT
CtgtgaccgcagtcggaggtgaCCCAAAAACTCCTCTTTCGATTGCTCCA
CGAAGGTGGGGGAAGTCGCTACTTTTTTTCCCTATATTTCTCCACTATAA
CTCTAGCACCTCACCCAGGGTCATAATTAACATTTTGAACCTTAACGTTT
GCTACACCCCATTCCCACAGACCctctggaaaaattggccaaaatatcgt
cccaagTGGAAAACTATCCCCCATagcaatttttgtccccactgagaTTA
ATCAagtaaaccaatcctcactgcaaaatgttATACTATTTCTCcccatc
cccattgaattttctgatttgaaaacaaaagaatttgaaacCCCAGCCAA
AACGAATATGGTAATATCAAGCCCCATCGTTTTTCAGTCCGTTACTTTTA
ACCCTCACTGGCAGAAAAAAGCCTACTatgtctgtgagaagggatgTTTT
GCTTGTTTTGTCGTCTCAATTGATCATTTCTTTCCCGAACAACATTTATT
TATGATTCTTTATTATTCACTTCATAGTTCGACATCAGCAGACTCTTTCA
GCATCAAACACAttctaaaaaaagagaaatcacAACCTTTACAAACAGAC
TACCAAATCGATCACAAAAGACGCTATTCCTCGTCCCTCTCGCCTCCAAC
ATTCTACCACGACAAATTATCACCTATTACAACTTGTCTACCATCTCCCA
GCAATTACTATGGCAACTATCGAGCATCACAATTATTCGATGACGATCGC
TACTTCCCATCCAAATACAATACAATGGGATGTCGTAAATATCATAAATT
ACCGCCCTTTTTGGAACATAGTCGATTCATATCATCACCACCCTTACCGC
CCTCTTCCCACCATTTGGATAGGTTACATCTCTCAGCGAACGCATATACA
AAAGGTAACCATTTCAAATATCAAACTTAGAATGtactacagtggagtct
ccataattcgaagaCGCACGGGGAACAGAAATgttttcgagttaaggaaa
tttcgagttatggagtaaagtctataaggtattgttaactgaagggacga
gaaaacttgttcgagttaaggagacatttgagtttaagagtttcgagtta
aagaaactccACTGTAAGTACAATCGATTGAAAAACTGTTCATCAGGATT
AATATATGACTGGAATTGAATACGGAAGTAGCAAAAACAAGAAAACCTGC
TCCCAACAGTTGATATTTTCCTACTTGAAGCAGACTAATCAATAagtgtt
tcaaatttttcagataacatcgGAAAACGCGCCCATCGAATAGAAGGAAG
ATCATCAAAAGATGGACACTCTATCAAAACGAAAAGTACTCGTCTAACAT
CCAGCGGTAAAAAGCGTCGCCGCCACCGCACTGCATTTACGCCAACACAA
TTGTTAGGGTTGGAGAATTCATTTGAGCGTGGTCACTATCTGGTGGGTGA
CGAAAGGAAACAATTGGCTGCTTTCCTGAGACTCAGTGAAACACAAATTA
AAGTAAGAATCTCTCTCTCTCACTTCAAACTTGATTATGTACTTTATTAC
TGAAATTTGTTTATGATATACGTCacacatcttttttataagcaaccagg
cTGCAAAGGCTCGAGGgctcaaatttgccaaaattcttttaccatctcgt
aaagtaaaagccTTTTAAACATTCTAACCATGGTTGACAATAGCCCTTta
cccaataagcataaatatggtttAATATCAAGGGTTGTCTATAGGTGGCT
GTATATTCAGAAAAAGAGCTAGGATGCTAATCAACCCCAGGGCTGACCCT
AAAATTGGGttacttataaaaaatgtgtattgaaAATATCTTGCATTGGC
TTTTCTGTAACTACACTGTCAATCCCGTGACTGAATCGTTCTCCTGGGGG
ATTGCCAAGAGTGAAATCTATTTTATAATTTCTTGACATAAATCATAAGA
AACTTTCCTGGTCTGATAACCAACCtgatacatgtttttctttctaTAAG
CATAGGCaagctcagtttttggtacttTATCTAAACAATGACTCTATTga
ttaagaacaatagaatactaagcataatgcgagcttATTGAAATAACATG
TACACCTTAATAACCAATTCAAGATTTCTTGATATCACtgggtggttttt
cactgagactgtcttgcgaaaatcgattagctgaaacaaagaaaattgat
aggaaagcattactgactcccaaaacagttgtcaaagcgtttacaaccct
tgaatttgaagaaaattttattaaaaatcatcaactcgcatatcaaggga
tttagaattacagccttctaatgaacattttctgtgacaagattcctcgt
cttttgtatcaaatcaatacagatgaaagtttgctcttcaactctatcgg
gaaagaaaacacttttcccattatgaccaattttttacaaaagaatccca
ctgcacattctgttacttttatggcaaccaatttatttatgctgcctttt
tcgcttaattggtcattaaaggtttaatgaccaattttcgacgttaaatc
tggaatgctgatatgaagcgatcaaaatctgatgttaagcccgaatcttc
attgtatattttttacaacccttagaaatttatgaaaaggaccgttgatg
agaaccgattatctatctagcgtagtgaaaagCACCCACTATTCCTTCAC
TATTTGATAAATTCAAAAGTTgatcaaaatttcttttaatttctttactA
AAGGTATGGTTTCAAAACCGTCGTACGAAATACAAACGACAACGAAATGC
AATGTACGAAAATAATGGCGTTTTATCGGACGGCTCTGATTATTCGGACA
TCGGCgaagaagaagaggaagaatgtgtatgatgaaatttttattgattt
ctttttttgttatgttttgtAAATATTCTTGtaaaattattaatttattt
ataaTTTGTTGACAATTTGTAAAAGCCGTAAAAGAGTTgca Coding sequence (CDS) from alignment at scaffold_242:588258..592248+ >TCONS_00054222 ID=TCONS_00054222|Name=TCONS_00054222|organism=Clytia hemisphaerica|type=CDS|length=4716bp|location=Sequence derived from alignment at scaffold_242:588258..592248+ (Clytia hemisphaerica)
ATGGAAAGAGTTATGGATCCTGATGCCATGTTTCTACCACACGAAAACAG
TGACCTCAAGTACCGGCATCACGAAAAGATTGCACAACCACCAAAAACGC
GACGATATTTAATGGACGAGAAATTTTTACGGAAATCGACATCTTTTGAT
ATACGTGGACATCATCGCTCCGAACATCGTCCAGTATGTGACATTCCTCT
TGTGTATGATCCAATGCGTGATTGCGGGCCGCGAGCACAATGGCACGGGG
CACCGTCGCACGTTCACGGAAGCTATATTAAACAAGAATATGATACTTTC
GAAACAAATGAGGATGTCTACATGTTACCAAAACGCTCGAATTCAACCTC
CCCGACATCAAATATGAGACGACATTTATCAAACACGCCCCCGTTATCAT
CGACCCCGCCCTCTGCCACGCCATCCTCTCAAAGTTCGACATCAGCAGAC
TCTTTCAGCATCAAACACAttctaaaaaaagagaaatcacAACCTTTACA
AACAGACTACCAAATCGATCACAAAAGACGCTATTCCTCGTCCCTCTCGC
CTCCAACATTCTACCACGACAAATTATCACCTATTACAACTTGTCTACCA
TCTCCCAGCAATTACTATGGCAACTATCGAGCATCACAATTATTCGATGA
CGATCGCTACTTCCCATCCAAATACAATACAATGGGATGTCGTAAATATC
ATAAATTACCGCCCTTTTTGGAACATAGTCGATTCATATCATCACCACCC
TTACCGCCCTCTTCCCACCATTTGGATAGGTTACATCTCTCAGCGAACGC
ATATACAAAAGataacatcgGAAAACGCGCCCATCGAATAGAAGGAAGAT
CATCAAAAGATGGACACTCTATCAAAACGAAAAGTACTCGTCTAACATCC
AGCGGTAAAAAGCGTCGCCGCCACCGCACTGCATTTACGCCAACACAATT
GTTAGGGTTGGAGAATTCATTTGAGCGTGGTCACTATCTGGTGGGTGACG
AAAGGAAACAATTGGCTGCTTTCCTGAGACTCAGTGAAACACAAATTAAA
GTATGGTTTCAAAACCGTCGTACGAAATACAAACGACAACGAAATGCAAT
GTACGAAAATAATGGCGTTTTATCGGACGGCTCTGATTATTCGGACATCG
GCgaagaagaagaggaagaatgtgtatgaATGGAAAGAGTTATGGATCCT
GATGCCATGTTTCTACCACACGAAAACAGTGACCTCAAGTACCGGCATCA
CGAAAAGATTGCACAACCACCAAAAACGCGACGATATTTAATGGACGAGA
AATTTTTACGGAAATCGACATCTTTTGATATACGTGGACATCATCGCTCC
GAACATCGTCCAGTATGTGACATTCCTCTTGTGTATGATCCAATGCGTGA
TTGCGGGCCGCGAGCACAATGGCACGGGGCACCGTCGCACGTTCACGGAA
GCTATATTAAACAAGAATATGATACTTTCGAAACAAATGAGGATGTCTAC
ATGTTACCAAAACGCTCGAATTCAACCTCCCCGACATCAAATATGAGACG
ACATTTATCAAACACGCCCCCGTTATCATCGACCCCGCCCTCTGCCACGC
CATCCTCTCAAAGTTCGACATCAGCAGACTCTTTCAGCATCAAACACAtt
ctaaaaaaagagaaatcacAACCTTTACAAACAGACTACCAAATCGATCA
CAAAAGACGCTATTCCTCGTCCCTCTCGCCTCCAACATTCTACCACGACA
AATTATCACCTATTACAACTTGTCTACCATCTCCCAGCAATTACTATGGC
AACTATCGAGCATCACAATTATTCGATGACGATCGCTACTTCCCATCCAA
ATACAATACAATGGGATGTCGTAAATATCATAAATTACCGCCCTTTTTGG
AACATAGTCGATTCATATCATCACCACCCTTACCGCCCTCTTCCCACCAT
TTGGATAGGTTACATCTCTCAGCGAACGCATATACAAAAGataacatcgG
AAAACGCGCCCATCGAATAGAAGGAAGATCATCAAAAGATGGACACTCTA
TCAAAACGAAAAGTACTCGTCTAACATCCAGCGGTAAAAAGCGTCGCCGC
CACCGCACTGCATTTACGCCAACACAATTGTTAGGGTTGGAGAATTCATT
TGAGCGTGGTCACTATCTGGTGGGTGACGAAAGGAAACAATTGGCTGCTT
TCCTGAGACTCAGTGAAACACAAATTAAAGTATGGTTTCAAAACCGTCGT
ACGAAATACAAACGACAACGAAATGCAATGTACGAAAATAATGGCGTTTT
ATCGGACGGCTCTGATTATTCGGACATCGGCgaagaagaagaggaagaat
gtgtatgaATGGAAAGAGTTATGGATCCTGATGCCATGTTTCTACCACAC
GAAAACAGTGACCTCAAGTACCGGCATCACGAAAAGATTGCACAACCACC
AAAAACGCGACGATATTTAATGGACGAGAAATTTTTACGGAAATCGACAT
CTTTTGATATACGTGGACATCATCGCTCCGAACATCGTCCAGTATGTGAC
ATTCCTCTTGTGTATGATCCAATGCGTGATTGCGGGCCGCGAGCACAATG
GCACGGGGCACCGTCGCACGTTCACGGAAGCTATATTAAACAAGAATATG
ATACTTTCGAAACAAATGAGGATGTCTACATGTTACCAAAACGCTCGAAT
TCAACCTCCCCGACATCAAATATGAGACGACATTTATCAAACACGCCCCC
GTTATCATCGACCCCGCCCTCTGCCACGCCATCCTCTCAAAGTTCGACAT
CAGCAGACTCTTTCAGCATCAAACACAttctaaaaaaagagaaatcacAA
CCTTTACAAACAGACTACCAAATCGATCACAAAAGACGCTATTCCTCGTC
CCTCTCGCCTCCAACATTCTACCACGACAAATTATCACCTATTACAACTT
GTCTACCATCTCCCAGCAATTACTATGGCAACTATCGAGCATCACAATTA
TTCGATGACGATCGCTACTTCCCATCCAAATACAATACAATGGGATGTCG
TAAATATCATAAATTACCGCCCTTTTTGGAACATAGTCGATTCATATCAT
CACCACCCTTACCGCCCTCTTCCCACCATTTGGATAGGTTACATCTCTCA
GCGAACGCATATACAAAAGataacatcgGAAAACGCGCCCATCGAATAGA
AGGAAGATCATCAAAAGATGGACACTCTATCAAAACGAAAAGTACTCGTC
TAACATCCAGCGGTAAAAAGCGTCGCCGCCACCGCACTGCATTTACGCCA
ACACAATTGTTAGGGTTGGAGAATTCATTTGAGCGTGGTCACTATCTGGT
GGGTGACGAAAGGAAACAATTGGCTGCTTTCCTGAGACTCAGTGAAACAC
AAATTAAAGTATGGTTTCAAAACCGTCGTACGAAATACAAACGACAACGA
AATGCAATGTACGAAAATAATGGCGTTTTATCGGACGGCTCTGATTATTC
GGACATCGGCgaagaagaagaggaagaatgtgtatgaATGGAAAGAGTTA
TGGATCCTGATGCCATGTTTCTACCACACGAAAACAGTGACCTCAAGTAC
CGGCATCACGAAAAGATTGCACAACCACCAAAAACGCGACGATATTTAAT
GGACGAGAAATTTTTACGGAAATCGACATCTTTTGATATACGTGGACATC
ATCGCTCCGAACATCGTCCAGTATGTGACATTCCTCTTGTGTATGATCCA
ATGCGTGATTGCGGGCCGCGAGCACAATGGCACGGGGCACCGTCGCACGT
TCACGGAAGCTATATTAAACAAGAATATGATACTTTCGAAACAAATGAGG
ATGTCTACATGTTACCAAAACGCTCGAATTCAACCTCCCCGACATCAAAT
ATGAGACGACATTTATCAAACACGCCCCCGTTATCATCGACCCCGCCCTC
TGCCACGCCATCCTCTCAAAGTTCGACATCAGCAGACTCTTTCAGCATCA
AACACAttctaaaaaaagagaaatcacAACCTTTACAAACAGACTACCAA
ATCGATCACAAAAGACGCTATTCCTCGTCCCTCTCGCCTCCAACATTCTA
CCACGACAAATTATCACCTATTACAACTTGTCTACCATCTCCCAGCAATT
ACTATGGCAACTATCGAGCATCACAATTATTCGATGACGATCGCTACTTC
CCATCCAAATACAATACAATGGGATGTCGTAAATATCATAAATTACCGCC
CTTTTTGGAACATAGTCGATTCATATCATCACCACCCTTACCGCCCTCTT
CCCACCATTTGGATAGGTTACATCTCTCAGCGAACGCATATACAAAAGat
aacatcgGAAAACGCGCCCATCGAATAGAAGGAAGATCATCAAAAGATGG
ACACTCTATCAAAACGAAAAGTACTCGTCTAACATCCAGCGGTAAAAAGC
GTCGCCGCCACCGCACTGCATTTACGCCAACACAATTGTTAGGGTTGGAG
AATTCATTTGAGCGTGGTCACTATCTGGTGGGTGACGAAAGGAAACAATT
GGCTGCTTTCCTGAGACTCAGTGAAACACAAATTAAAGTATGGTTTCAAA
ACCGTCGTACGAAATACAAACGACAACGAAATGCAATGTACGAAAATAAT
GGCGTTTTATCGGACGGCTCTGATTATTCGGACATCGGCgaagaagaaga
ggaagaatgtgtatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054222-exon-scaffold_242-1491911889:588258..589183 | TCONS_00054222-exon-scaffold_242-1491911889:588258..589183 | Clytia hemisphaerica | exon |
| TCONS_00054222-exon-scaffold_242-1510915933:588258..589183 | TCONS_00054222-exon-scaffold_242-1510915933:588258..589183 | Clytia hemisphaerica | exon |
| TCONS_00054222-exon-scaffold_242-1575043694:588258..589183 | TCONS_00054222-exon-scaffold_242-1575043694:588258..589183 | Clytia hemisphaerica | exon |
| TCONS_00054222-exon-scaffold_242-1491911889:589785..590161 | TCONS_00054222-exon-scaffold_242-1491911889:589785..590161 | Clytia hemisphaerica | exon |
| TCONS_00054222-exon-scaffold_242-1510915933:589785..590161 | TCONS_00054222-exon-scaffold_242-1510915933:589785..590161 | Clytia hemisphaerica | exon |
| TCONS_00054222-exon-scaffold_242-1575043694:589785..590161 | TCONS_00054222-exon-scaffold_242-1575043694:589785..590161 | Clytia hemisphaerica | exon |
| TCONS_00054222-exon-scaffold_242-1491911889:590521..590759 | TCONS_00054222-exon-scaffold_242-1491911889:590521..590759 | Clytia hemisphaerica | exon |
| TCONS_00054222-exon-scaffold_242-1510915933:590521..590759 | TCONS_00054222-exon-scaffold_242-1510915933:590521..590759 | Clytia hemisphaerica | exon |
| TCONS_00054222-exon-scaffold_242-1575043694:590521..590759 | TCONS_00054222-exon-scaffold_242-1575043694:590521..590759 | Clytia hemisphaerica | exon |
| TCONS_00054222-exon-scaffold_242-1491911889:592011..592248 | TCONS_00054222-exon-scaffold_242-1491911889:592011..592248 | Clytia hemisphaerica | exon |
| TCONS_00054222-exon-scaffold_242-1510915933:592011..592248 | TCONS_00054222-exon-scaffold_242-1510915933:592011..592248 | Clytia hemisphaerica | exon |
| TCONS_00054222-exon-scaffold_242-1575043694:592011..592248 | TCONS_00054222-exon-scaffold_242-1575043694:592011..592248 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:588258..592248 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00054222 vs. Swiss-Prot (Human)
Match: EMX1 (Homeobox protein EMX1 OS=Homo sapiens GN=EMX1 PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 2.810e-21 Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1
Query: 1396 GKKRRRHRTAFTPTQLLGLENSFERGHYLVGDERKQLAAFLRLSETQIKVWFQNRRTKYKRQR 1584
+K +R RTAF+P+QLL LE +FE+ HY+VG ERKQLA L LSETQ+KVWFQNRRTKYKRQ+
Sbjct: 156 ARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKRQK 218
The following BLAST results are available for this feature:
|
