TCONS_00054234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054234
Unique NameTCONS_00054234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054234 ID=TCONS_00054234|Name=TCONS_00054234|organism=Clytia hemisphaerica|type=transcript|length=740bp
CAGACGGCTGTCACTTTCAACAAATTGTATAGAAAAAATTGCCAATCTCA
ATGGTCTCAaaaatttaaagattttatcaCTTGGGAGGAATAACATCAAA
AATTTAAACGGTCTGGAAGCAGTAGCGGACACTCTTCAAGAATTATGGAT
ATCTTATAACAATATTGAAAAACTGAAGGGTATTGGtgttcttaagaaat
tacaggTTCTTTATATGTCAAACAACCAAGTCAAAGCATGGGATGAATTT
CAAAAACTCGGTGAACTGCCTAATTTGGCTGATTTGCTATTTGTTGGTAA
CCCATTAGAGGAAAAACACAACACTGAGGGAGATTGGAGAGATCTAGCGA
CCACCAAATTACCAAAACTCAAGAAATTAGACGGTGTACCTGTCGTACGA
CAAGATGAGGAGGAATAAATCAAATGAAATCCAAGATGGCTGATTCAACC
CTCGGATTCAACGACCATCTAAGATCTTGTTCCGCGAGCgcttatttctt
ttgtaaataTTCTAGATGATTTCTGATAAGGTTCTACTGTATTCTTTAAG
GCCCTGTATATTTTTTTGGTATGATAAGATTAATATACTAGATGATAATT
TATTTGTAAATggtcttttttttaattctaaaagttatgaaaaataatat
ttcaatgtTGTCatcaattttgagtttaaaattccttttttggGCTCATA
ATGACACTGGAATTCTTAAGAGGTATATTTCATCATAAAT
Run BLAST on NCBI

protein sequence of TCONS_00054234-protein

>TCONS_00054234-protein ID=TCONS_00054234-protein|Name=TCONS_00054234-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
RRLSLSTNCIEKIANLNGLKNLKILSLGRNNIKNLNGLEAVADTLQELWI
SYNNIEKLKGIGVLKKLQVLYMSNNQVKAWDEFQKLGELPNLADLLFVGN
PLEEKHNTEGDWRDLATTKLPKLKKLDGVPVVRQDEEE
Run BLAST on NCBI

transcript from alignment at scaffold_242:811196..823066+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054234 ID=TCONS_00054234|Name=TCONS_00054234|organism=Clytia hemisphaerica|type=transcript|length=11871bp|location=Sequence derived from alignment at scaffold_242:811196..823066+ (Clytia hemisphaerica)
CAGACGGCTGTCACTTTCAACAAATTGTATAGAAAAAATTGCCAATCTCA
ATGGTCTCAGTAAGTGTTTGCTAATTTTATTGAGTATACGTTTTCCCTTT
GTCACCCCAGTCATATTTTATAGTTCGGACCTCCCCTGACACCTTccgaa
aaaattttcatgaaaaatatatttcagattattttcaagcactgttatga
aatttggccttcatgaaaggaagttctcTGTTAGActagtctgagtcaaa
aagaagaaagaagttttttattattattcgCTTTCAAAAGatattataaa
ttcatatatttgttagctatttttaTCCAAAATCCTTGAGGGATAGGCAT
TTTTCATAGGTTGGTGAGATGCCAAGAGAGGGGGTCATTCGCACTATGTA
TTCGTGATAATACGTTGACATTATCGTTCTGATAGCTTAAGATGCAATCC
AAAagtcaaatttcttttaataGGAAAgttatctttttgaaatttttatc
aatcCAGATTAATCATGTacgattttttctttcttatttagaaaatttaa
agattttatcaCTTGGGAGGAATAACATCAAAAATTTAAACGGTCTGGTG
AGTATTCAATTAATTGATTTGGGTTTTCCTGGAAACACTGCATACCCTTA
TTTAAAGAGGCCCATTTCTGTTCCAGGgggggggtaaggtttgaaaaatg
ctggaattccatagggatTTAAACCTAAAAGTAACTGGAATTCCAGAAGT
TCTAAGTCAGAAAAAAGTCGGACCTTCTCAGCAGAAGGTATACATATttt
tctacaatcagtgccaaaatacttggcacgAAAGGGAAATTCTCCACGAA
ATTTTaaaaccacaaacaatttggaccgaaattgacattctcgctcgaat
ttcaattttcgaaaaatggtaaaatagccaaaattgccaattatgttatg
gcactgattgtagaaagGCCCATTGTACCTACCTACCTTAATGAAGGTTT
TATTCTAGCCTATCCTTAgttctttttttggaaatcaaggTATACGAATG
ATTCACTAGCGTTTGATGAAATTGCCAGTGGGAAGTGTTAATTATATGGA
GGATGTTTGATATTTTAAAAGCTGACAATAGACCATTTCAAGGTCATCTC
AAGGGTTGAGTTGAGCCAAGTTTAAATCCTGTAATTTTCACAGCTTAATC
CATATCTAAATAGAATTTATTTTCTGTTTCAGGAAGCAGTAGCGGACACT
CTTCAAGAATTATGGATATCTTATAACAATATTGAAAAACTGAAGGGTAT
TGGtgttcttaagaaattacaggTATGAGCATGAATCTGGTAATGTCACC
caaatagatgaaaaaatttggaaaaaataaagttttgactttcactttta
ttcctggataatttttttattaatgacttcaattttcagaaaacataagt
ATCAGGGCTTAATCAAACTGGCTTGGTCAAGAAATTTGACCTAGAGTAAT
TATAATCaaacaaatttggcaaaaaactctttgtaGTTTACACTTCATTT
GAGATAAAATATGCATAATCTAATACTTGTCTTAGATTTCAGATCATGGC
TAATATGTTAAGCTGcattgaaaagcaatttttaccgTCCAgtatgtcat
atttttcaaattctgacactttttccgaaagaaaatctaaaatattaaaa
aatattcccataaagtttgacttcatgaaAATAAAACTGGCTATGGTCAG
GTAATttcattctagatttgaagGACTCATCATAAGCCTTCCAAAAAGCA
AAAGTTTGCTATATTTCAGTTagtcaataaaaaattagaaaatgaaacct
tgtcggttgcggacataactttttgttaaatttgattcaaaatcagcaat
agacattaaatttatttattttttggcttttaaaactttgctgtacttga
accaaaacttaatcattgaaatttgttgtCTTGAAAGGTCTTTATAACTA
TGATTTCCTGAAAATCGAAGATTTATTTGTAAAAGAANAAATCTAACCAG
TCTGTAAGTGAATGTGTAGTAGATTATGTTGTGTGAACACTACACAATGA
ATTTAATATGCAAATTAATGCATAATTTATTCTTTATTCAAGCTCGCAGG
CTCAGGACcgtcattttcaaagaaacaaaaaaaagttatttttctgttaa
aattctcattttggACCTCAACTTGGCATCAGaatatttgttttctattt
GTAATAGCCTAAGCACTACttccatataataaaacatcatgCCAGCTTGC
AAATACATTTTATCAGCAACATTTTAGATGAAATAGTTATGTCCACAACA
TGAAATACATATGATATGAGGTGGAAAGACTGAAATCTTGCCAATGGAaa
attatcagacttttttctGGTTGTAGNATGATTTGAGCTTGACATCAACT
GCTGTACATCTTCATAATCAGTAAATATCATTTTTCCGTGAAAGTCACTC
Aactttttcaatagaaaggcttaaatgtataataatgatgtgttgcggac
ataactttttttcttccagGGTAGAACCATAGAACATTATACATCATTTA
TTTAATNACCTCAAATGTaataatttgtcaaagaaacctAAAAATGGTGT
TTGGGGGCTGAGAAAACTTCATgatttgttgcggacataactaattTTTA
GGGAAACTGTTTTGTTTCACTGTCTCCCAACAAGTAGACTTTGAgacttc
aaatttgtataaaatgacCCCAAATATGACCCTTGATGTAGAAAAATGAT
TCAGCTGAGTAAGGATAActcctttgaaaatttaaaggataaaataatgt
GCAGACATAACTCAAAATTGTGAACGGAAATCATACCCTGTTCActtcaa
aattgaatatttttcaatgaaggaCAACTGGTATTTTAGTGTTACTTGGT
TTGGTTCTCTAATGGATGGGAAGGGTTAGAAATCAAATAACTATAGATAT
TAACACTTTCACTTCTCTAGCAAATCAATtgtgtgcggacataactttgt
gAACGGAAAAAGTTATGTCTGCAACTTTTTGCATTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGCATTTATTCTGGgaaaaac
ttaatttcaaaaaatctttttgtagattctgtttttcatatttattggct
gtaataaaaacaaaaattaagtaTGATCAGAGATGATTGGCCTAGattat
caaataatgaacttagacaatttgctaaaaacctcattttccgttcacat
tttgatgtaaaaagctgtcctgaaaaaattgtgtactttctaaagtgaaa
aaaatgactgtttaagCTTGCTAGTATCAAGACTGATAAAATACATCAGC
TGGTATCATTATTGCATGcacctagatttttcactggagccttaaagttg
acaagttgacaaaaccgaaaatgggTGACATTAGCAGACTCATGCTCGTA
TATTATCTTCTTTGATCTTATTTTTAATCCTTTATTTGATGCGTTTGTTT
GTTCGTGATAAGTAGTAAGTCTGCgatcggaggcgacccgaaggctcctc
tttcgatagctatctacccgaaggtagtagggtagggcgccactctttct
cctaGGATTACTCCACTTACCCTTcatccttctcttaattactgagcata
aagcagagaggcatcaagtaccatttcggaaatctttggtatgacccggc
tgggggctgaaccgtagccggatgctctaccactgcactacggtcgctcg
TGCGTGATAAGATAACACGATAAGAgaatatatttatattttaaggCCAA
TTAAGAGGCCGAACTAAAATTTACCtatttttattagaaaacttgtattt
tatctatttttctcttcatctgaaagaaatttttcaatctttagtatttc
ttcaattttttctttaggTTCTTTATATGTCAAACAACCAAGTCAAAGCA
TGGGATGAATTTCAAAAACTCGTTAGTTCTCTTTTGTTTCATTTAAATTT
CTAATTATCTGAACTTCCCATTTTAATTTTAGTGTTTCATCCTTTAAAAT
ACACCATTTAGAATTTTTATTGGTCTTCGATGATTTTATACTTTGAGATA
CGTAAAATAACCCCCCCCCTATTGTCCCTATGTCATTAATAAACCTCATC
TAAATCACCATCTGGTTTATATTTTTAGGGTGAACTGCCTAATTTGGCTG
ATTTGCTATTTGTTGGTGAGTTctattactttaatgggataaattttcgc
ggggattaaatttcgtggttgggctcatccgcgaaattttaagaattcgc
gggaacttaattttgcaacatgacacccaaatccgccaaatttgcgaaat
ttaattcccgcgaaaatttatctcattttaaagtaattttttgaTCCTTT
AAGACCGTGTGCTAAATTACTTTTCAACTCTCATTTTTGCAAGTTTACGT
ATCTACCCTTTTGAGGACGGTTGAGTAACTGAAGCGTAACAACCgtagtt
ttgacccgcaaaatcaaggacggtaaaagtgctgatttaccatcgtcctc
agtcaatcaggatctagCAAAAACTAGAAAAATAACTATCTTCATCGTAT
AAAACACCAAAttatgggacaagctggagtttttacaagatagaGAAATG
CCGAATTTTGCAGAACAGCATCAATTCATCCTTTCTTACTACAATGTTTA
AAATTACAAAGTTACAATCATTGAAATACTGAATATAtcgaaattctatc
aaaaaaaaattacaccatactcaagtcccgaagtcccaaattgaaataca
tcaaatttctgagaaaacaaaattacaccaaccaaaagtcccgaggtccc
gaagtcccgaattgaagtaTGTCAAAATTCTATCATAAAAAGAtttacac
caaccaaaagtcccgaagtcccgaattgcaaaatatcgaaaatctattaa
aaaaaaattacaccatacTCAAGTCCCAAGGTCTCGAAGTCccgaatttc
aataaatcaaatttctgagaaaaaaaattacaccaaccaaaagtcccgag
gtcccgaagtcccgaattgacgtatgtcaaaattctatcataaaaaaatt
tacaccaaccaaaagtcccgaggtcccgaagtcccgaatttcaataaatc
aaatttctgagaaaaaatatCACACTAACCAAAAGTCCcaaggtcccgaa
gtcccgaattgaagtacatcaactttctgaaaaaaatattacaccaaccc
aaagtcccgaggtcccgaagtcccgaattgcaaaatatcaaacatctatt
taaaaaaaaatcacaccatacctaagtcccgaagtcccgaagtcccgaat
tgaaatacatcaactttctgaaaaaaaatattacactaatcagaagtccc
gaggtcccgaagtcccgaattgcaatatatcgaaaatctattaaaaaaat
cacaccatacctaagtccctaagtcccgaagtcccgaagtcccgaatgga
aatacatcaactttctgaaaaaaaatattacactaatcagaagtcccgag
gtcccgaagtcccgaattgcaatatatcgaaaatctattaaaaaaatcac
accatacctaagtccctaagtcccgaagtcccgaagtcccgaatggaaat
acatcaactttctgaaaaaaaatattacactaatcagaagtcccgaggtc
ccgaagtcccgaattgcaatatatcgaaaatctattaaaaaaatcacacc
atacctaagtcccgaagtcccgaaatgaaatacatcaactttctgaaaaa
aatattacgccaacccaaagtcccgaggtcccgaagtcccgaattggaaa
atatcgaaaatctatttaaaaaaaataacactATACctaagtcccgaggt
cccgaagtcccgaattgaaatgcatcaactttcagaaaaaatatGACACT
Aatcaaaagtcccgaggtcccgaagtcccgaatttcaataaatcaaattt
ctgagaaaaaatattacgccaaccaaaagtcccgaggtcccgaagtcccg
aatttcaataaatcaaatttctgagaaaaaatattacgccaaccaaaagt
cccgaggtcccgaagtcccgaattgaagtatgtcaaaattttatcaataa
aaaatattacaccaacccaaagtcccgaggtcccgaagtcccgaaatgAA
GTACATCAACTTTTACCCCTAATCTTTTCATACTATTACTGCCACCTCCC
TTTACATCCATCTCACCCCTTTCTCACCCTCCCTTTGCATCTACAGTATC
TCACCCCTGTCTTCATGTATATCTCTGACCTCTCTTTACGGGTCATCCCA
CCCTTTATCTTGTGTTTCATCAATCATTTATCCAAGCCCCTCTTTTTGCT
TGAGTTTCATCCCACCCTTGCCTAATTCAACAATCCGATCCTCCTTCTCA
CCATGTCTAATCTATCATTCTTTTTCTCCGGTCCTTTTTCAACTTAGTTC
CACCCCACCCGTTTTCCTTCCTTATGTGAAATTTTTATCCATGTCCATTT
CATTAatctcacccctgtctcactgtaTTCAATTTATCATTCATTGTCTC
CGCCCCTCTTTCACCCCCACCtcttttgatagatttccaaTCTTTCTTTA
TGTGAAATTCACTAAACTCTCCCCTCTTTCCACTCGAGTTTTCCCCAACT
TTGTGTGGAAATTACACCCTTGTCTATTTCATCAATCTCACCCCTGTCCA
ATCAAATTTAATCAATTAGTCATTTCCCCCGGTCCTCTTTCTACTTGAGT
TTCCATCGGGACTTCGAGACCTTGGGATTTTTGATTGGGGTAACTTTTTT
CAGACTATACTTTGGTAAATTTCCATTCGGGACTTCGAGGCTTTAGGttg
gtgtaaatttttttttctggtagATTTTGATATATTATAATTCGGGActt
tcgggacctcgggacttttggttggtgtaattttttttcataagtttgat
atttcgggacttcgggacctcgggactttaggttggtgtaaaaaaaattt
ttctggtagaattttgatatatttcaattcgggactttcgggacctcggg
actttaggtttgtgtaattttttctttgaaatttgatatagttcaattcg
ggactttcgggacctcgggacttttggttggtgtaattttttttcataag
tttgacatttcgggacttcgggacctcgggactttaggttggtgtaaatt
tttttttctagtagaattttgaattatttcaattcgggactttcGGGACC
TACAGACTTTAGGtttgtgtattttttttcttcgaaatttgATATAGTTC
AATTCGGGActttcgggacctcgggacttttgtttggtgtaatttttttt
cataagtttgACATTTCGGGAgatcgggacctcgggactttaggagggtg
taaattttttttttctgatagaaatttaatatatttcaattcggttggtg
aattttcttttcagatagAATATATCTCAACTTATTCTGTTTTTGCGTTC
TGTGAAATACACATAAAAAATCATGACCGacgttgtaaaaactccagctc
atccgcAAATTATAAACACGCTTTAATTAGTGTTCAGTGTGGAGCAAAAA
ATATGATCTCGTATGAgtcatatatttttgaaaattgtctgGTACTTATA
CGTATTATAGAGGGCTctttattggaaaaataatCAAGTAATTTTGCCTC
TTATCCCTAACCTAAACAAGATTTAGTtccaaaaataagattttttcttt
tctgactGAACTAGGTCATGTTGCATTCTATTGTTAGTAAAAAAAAACGG
GGGGATTTCTTCCCCCTAAATTTGCCCGTGGATTTTTGGGAATAAATCTT
CCTTCGTGAAATTTTGGTAATTCTCATGGGTAAACTTAATCTCTTAATGT
AGGTCTATTGTGAAGATAccgggggaggggggtactGATCTTGATGACCG
ATGAGGACATGTCGCTGGAGTTTGAAaggtggaccctgtcagatatgaat
atttggtaaatttggtatcctgtcagaacgaaaaatcgcaatattttccc
attttcaccctgaaaagtagCAAAGATACTAAAAGCagacaaaaaatcga
aaaagtttctaatttccaccctgaaaactgtccaaaataaccaaaagtgg
ACCCTGCCAGATACCTATTTcgaaaattattgaattttggaccctgtaag
actaaaaaagggaccctgaccagcggcacttCCCCGATATCAAGTTTGCC
TAAGTGTCTAAGTGAATATTAGGTCCTCAGTCTTTCCATTATTTTATTGG
CCTTCTTGTTGTAGGGCATAACATCTCTTCCCACTCCCCCGATCTTAATT
GAAGTTATTTCATTCCGACTAGTAACAGTTGTATTAACAATTTTAAGAAT
GATCTGCAAAATTTTCGGTCGATCAGTTATTTGGTTGGTGTTTTCAAGGC
CattatcaaaatgaaaaaacgaTGGATGTTGGCTTGCTATCGAAAAACTT
GTATcataattatttttgtatttttctgttAACAGGTAACCCATTAGAGG
AAAAACACAACACTGAGGGAGATTGGAGAGATCTAGCGACCACCAAATTA
CCAAAACTCAAGAAATTAGACGGTattctttttttcgtttttcctaACCC
TTAAAATACCATAATGCAACCTCTCCTCCACTCTTGCATATCTACATTTT
TCATATCTACAGTTCAGGCATAATTTTGCAGACACAGTTGACCCCTTCTG
CAACTGTCGACAAAATTCAGTAGAAacaacacagcattttttgatgcatt
gctctgattactctaatgacagacttgtgatgtttggcagccttcttcaa
cttgacataaccttgtttccattcaatcccaaaacattgtgtagaatact
tctttatggctACCCCGATTTTAGCATTGTCCAAAATCACGATATATTAA
gtataacaataaaatttatctgtgatacaagccgttttgggggaccgtta
ttttagtattttactctaactgctctccaagctctttttgtttttgtctt
tttattttttgttagtatttatcctctgtagtaagtttttttttcccatg
catttatcaattgattttttaatttattgttagcttagtttgggttcctt
cctcctggcggtatgatctggtggtccttttgtNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattcat
gcgAATTCTAGGAAAATTTGTTGATTGTGTGATTATTTTCACCGTATGGt
ggtaaataaataaatctcaGAACTCTTGAATTGTGAAAGAAATCTAATTA
ACATATTGAGAATTTTAAAGGACCCCACTCTTCTCTCACACCTTTTCGTA
ATTGGTTTAGCTCGTAAAACAATAACATGGGCCTATGAGATTCCCTCTCC
CCTGAAAAAATTAGCATAGGAGTCTTCACTGATGAGAAACCCAGAAACCT
CAAGCGATTTACACCTCCCTTGTCAATTAGCTCTTTTATTTCATTCCCAA
TAAtccacaaatgattttttacTGGTTAactgagacagggttgtaaaaaa
taccaaaacttgCGAAGGAATTTCAACAGCTAGAAAAATAACCTGAAAAT
GTCTTCTTAGTTTAGACTCCTATTTTCATGAGGTTTTTAGAGTAATTGGG
CAAAAAGAAGTGCCTCTCTTTTTCTTTCAGCTCAGTTTGTTTCATTACTT
GAGTACTGTTTTCCCCTTATCAACCATGTCAATGAATCATTGCATATGAT
TTCGAAATGACATTTATTTGGCACTAAAATCTAGTTTTTTGGCTTGTTCC
TCGAAATAACTTGTAACAAAACATTCTTGTTATTTCTAAACTTTATTTGT
TTGAAAGTATGTACAAACATACAAACACAGACTTCGGCGATCATTTTAgg
gaaattgaaataaattaacAACGTGTctgcaaaacaaaagaaaataattt
gagtactttcgttttctataaGTCGTCATTTCATCACCGAGGGAGTCGTA
CAAATTTTAATAGAATACACTCAATTCCTTTTATAAGCGTACGGGAAGAT
CGGGTCGAGGctcaatatgcttagcaaaatctcattttcagctttaattt
atgcttatttatatgcttaAACTTCGATTTGCTAATTTTCTTTGggttca
tgaaaatttcgaTTAGATTCTGCTCaaagaatgatttttttttgtaattt
taagctgcaggcgaaaatctttggtctaataaagctcaaacagctttaaa
agtaaccctaagaaggtcagcgttttagaaaatctgcgcgattttttttt
tcgttctagCTTGGAGTTATACGTATAATGCTTATTTTTCACCGAAATCG
AGCCTAATGCTTATAAAcgctatgcttataaaacaataCGAGTGTATCCT
TTTTTACTTATCAGGTGTACCTGTCGTACGACAAGATGAGGAGGAATAAA
TCAAATGAAATCCAAGATGGCTGATTCAACCCTCGGATTCAACGACCATC
TAAGATCTTGTTCCGCGAGCgcttatttcttttgtaaataTTCTAGATGA
TTTCTGATAAGGTTCTACTGTATTCTTTAAGGCCCTGTATATTTTTTTGG
TATGATAAGATTAATATACTAGATGATAATTTATTTGTAAATggtctttt
ttttaattctaaaagttatgaaaaataatatttcaatgtTGTCatcaatt
ttgagtttaaaattccttttttggGCTCATAATGACACTGGAATTCTTAA
GAGGTATATTTCATCATAAAT

Coding sequence (CDS) from alignment at scaffold_242:811196..823066+

>TCONS_00054234 ID=TCONS_00054234|Name=TCONS_00054234|organism=Clytia hemisphaerica|type=CDS|length=2919bp|location=Sequence derived from alignment at scaffold_242:811196..823066+ (Clytia hemisphaerica)
AGACGGCTGTCACTTTCAACAAATTGTATAGAAAAAATTGCCAATCTCAA
TGGTCTCAaaaatttaaagattttatcaCTTGGGAGGAATAACATCAAAA
ATTTAAACGGTCTGGAAGCAGTAGCGGACACTCTTCAAGAATTATGGATA
TCTTATAACAATATTGAAAAACTGAAGGGTATTGGtgttcttaagaaatt
acaggTTCTTTATATGTCAAACAACCAAGTCAAAGCATGGGATGAATTTC
AAAAACTCGGTGAACTGCCTAATTTGGCTGATTTGCTATTTGTTGGTAAC
CCATTAGAGGAAAAACACAACACTGAGGGAGATTGGAGAGATCTAGCGAC
CACCAAATTACCAAAACTCAAGAAATTAGACGGTGTACCTGTCGTACGAC
AAGATGAGGAGGAATAAAGACGGCTGTCACTTTCAACAAATTGTATAGAA
AAAATTGCCAATCTCAATGGTCTCAaaaatttaaagattttatcaCTTGG
GAGGAATAACATCAAAAATTTAAACGGTCTGGAAGCAGTAGCGGACACTC
TTCAAGAATTATGGATATCTTATAACAATATTGAAAAACTGAAGGGTATT
GGtgttcttaagaaattacaggTTCTTTATATGTCAAACAACCAAGTCAA
AGCATGGGATGAATTTCAAAAACTCGGTGAACTGCCTAATTTGGCTGATT
TGCTATTTGTTGGTAACCCATTAGAGGAAAAACACAACACTGAGGGAGAT
TGGAGAGATCTAGCGACCACCAAATTACCAAAACTCAAGAAATTAGACGG
TGTACCTGTCGTACGACAAGATGAGGAGGAATAAAGACGGCTGTCACTTT
CAACAAATTGTATAGAAAAAATTGCCAATCTCAATGGTCTCAaaaattta
aagattttatcaCTTGGGAGGAATAACATCAAAAATTTAAACGGTCTGGA
AGCAGTAGCGGACACTCTTCAAGAATTATGGATATCTTATAACAATATTG
AAAAACTGAAGGGTATTGGtgttcttaagaaattacaggTTCTTTATATG
TCAAACAACCAAGTCAAAGCATGGGATGAATTTCAAAAACTCGGTGAACT
GCCTAATTTGGCTGATTTGCTATTTGTTGGTAACCCATTAGAGGAAAAAC
ACAACACTGAGGGAGATTGGAGAGATCTAGCGACCACCAAATTACCAAAA
CTCAAGAAATTAGACGGTGTACCTGTCGTACGACAAGATGAGGAGGAATA
AAGACGGCTGTCACTTTCAACAAATTGTATAGAAAAAATTGCCAATCTCA
ATGGTCTCAaaaatttaaagattttatcaCTTGGGAGGAATAACATCAAA
AATTTAAACGGTCTGGAAGCAGTAGCGGACACTCTTCAAGAATTATGGAT
ATCTTATAACAATATTGAAAAACTGAAGGGTATTGGtgttcttaagaaat
tacaggTTCTTTATATGTCAAACAACCAAGTCAAAGCATGGGATGAATTT
CAAAAACTCGGTGAACTGCCTAATTTGGCTGATTTGCTATTTGTTGGTAA
CCCATTAGAGGAAAAACACAACACTGAGGGAGATTGGAGAGATCTAGCGA
CCACCAAATTACCAAAACTCAAGAAATTAGACGGTGTACCTGTCGTACGA
CAAGATGAGGAGGAATAAAGACGGCTGTCACTTTCAACAAATTGTATAGA
AAAAATTGCCAATCTCAATGGTCTCAaaaatttaaagattttatcaCTTG
GGAGGAATAACATCAAAAATTTAAACGGTCTGGAAGCAGTAGCGGACACT
CTTCAAGAATTATGGATATCTTATAACAATATTGAAAAACTGAAGGGTAT
TGGtgttcttaagaaattacaggTTCTTTATATGTCAAACAACCAAGTCA
AAGCATGGGATGAATTTCAAAAACTCGGTGAACTGCCTAATTTGGCTGAT
TTGCTATTTGTTGGTAACCCATTAGAGGAAAAACACAACACTGAGGGAGA
TTGGAGAGATCTAGCGACCACCAAATTACCAAAACTCAAGAAATTAGACG
GTGTACCTGTCGTACGACAAGATGAGGAGGAATAAAGACGGCTGTCACTT
TCAACAAATTGTATAGAAAAAATTGCCAATCTCAATGGTCTCAaaaattt
aaagattttatcaCTTGGGAGGAATAACATCAAAAATTTAAACGGTCTGG
AAGCAGTAGCGGACACTCTTCAAGAATTATGGATATCTTATAACAATATT
GAAAAACTGAAGGGTATTGGtgttcttaagaaattacaggTTCTTTATAT
GTCAAACAACCAAGTCAAAGCATGGGATGAATTTCAAAAACTCGGTGAAC
TGCCTAATTTGGCTGATTTGCTATTTGTTGGTAACCCATTAGAGGAAAAA
CACAACACTGAGGGAGATTGGAGAGATCTAGCGACCACCAAATTACCAAA
ACTCAAGAAATTAGACGGTGTACCTGTCGTACGACAAGATGAGGAGGAAT
AAAGACGGCTGTCACTTTCAACAAATTGTATAGAAAAAATTGCCAATCTC
AATGGTCTCAaaaatttaaagattttatcaCTTGGGAGGAATAACATCAA
AAATTTAAACGGTCTGGAAGCAGTAGCGGACACTCTTCAAGAATTATGGA
TATCTTATAACAATATTGAAAAACTGAAGGGTATTGGtgttcttaagaaa
ttacaggTTCTTTATATGTCAAACAACCAAGTCAAAGCATGGGATGAATT
TCAAAAACTCGGTGAACTGCCTAATTTGGCTGATTTGCTATTTGTTGGTA
ACCCATTAGAGGAAAAACACAACACTGAGGGAGATTGGAGAGATCTAGCG
ACCACCAAATTACCAAAACTCAAGAAATTAGACGGTGTACCTGTCGTACG
ACAAGATGAGGAGGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034210XLOC_034210Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054234-proteinTCONS_00054234-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054234-exon-scaffold_242-1491911889:811196..811254TCONS_00054234-exon-scaffold_242-1491911889:811196..811254Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1510915933:811196..811254TCONS_00054234-exon-scaffold_242-1510915933:811196..811254Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1575043694:811196..811254TCONS_00054234-exon-scaffold_242-1575043694:811196..811254Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1491911889:811737..811792TCONS_00054234-exon-scaffold_242-1491911889:811737..811792Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1510915933:811737..811792TCONS_00054234-exon-scaffold_242-1510915933:811737..811792Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1575043694:811737..811792TCONS_00054234-exon-scaffold_242-1575043694:811737..811792Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1491911889:812428..812517TCONS_00054234-exon-scaffold_242-1491911889:812428..812517Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1510915933:812428..812517TCONS_00054234-exon-scaffold_242-1510915933:812428..812517Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1575043694:812428..812517TCONS_00054234-exon-scaffold_242-1575043694:812428..812517Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1491911889:815763..815816TCONS_00054234-exon-scaffold_242-1491911889:815763..815816Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1510915933:815763..815816TCONS_00054234-exon-scaffold_242-1510915933:815763..815816Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1575043694:815763..815816TCONS_00054234-exon-scaffold_242-1575043694:815763..815816Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1491911889:816024..816060TCONS_00054234-exon-scaffold_242-1491911889:816024..816060Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1510915933:816024..816060TCONS_00054234-exon-scaffold_242-1510915933:816024..816060Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1575043694:816024..816060TCONS_00054234-exon-scaffold_242-1575043694:816024..816060Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1491911889:820431..820517TCONS_00054234-exon-scaffold_242-1491911889:820431..820517Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1510915933:820431..820517TCONS_00054234-exon-scaffold_242-1510915933:820431..820517Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1575043694:820431..820517TCONS_00054234-exon-scaffold_242-1575043694:820431..820517Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1491911889:822710..823066TCONS_00054234-exon-scaffold_242-1491911889:822710..823066Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1510915933:822710..823066TCONS_00054234-exon-scaffold_242-1510915933:822710..823066Clytia hemisphaericaexon
TCONS_00054234-exon-scaffold_242-1575043694:822710..823066TCONS_00054234-exon-scaffold_242-1575043694:822710..823066Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:811196..823066 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
139.506	145.702	158.334	160.974	181.554	149.518	147.574	148.209	80.9555	90.3123	62.7492	65.9893	9.1981	8.62939	10.3193	11.9699	21.5171	25.8585	13.2104	12.7833	21.7052	18.4327	34.7028	36.0769	126.97	114.982	35.5462	29.9185	19.4292	17.6042
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025875Leu-rich_rpt_4
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00054234 vs. Swiss-Prot (Human)
Match: DNAL1 (Dynein light chain 1, axonemal OS=Homo sapiens GN=DNAL1 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 6.439e-61
Identity = 105/137 (76.64%), Postives = 120/137 (87.59%), Query Frame = 2 
Query:    5 RLSLSTNCIEKIANLNGLKNLKILSLGRNNIKNLNGLEAVADTLQELWISYNNIEKLKGIGVLKKLQVLYMSNNQVKAWDEFQKLGELPNLADLLFVGNPLEEKHNTEGDWRDXXXXXXXXXXXXDGVPVVRQDEEE 415
            +LSLSTNCIEKIANLNGLKNL+ILSLGRNNIKNLNGLEAV DTL+ELWISYN IEKLKGI ++KKL++LYMSNN VK W EF KL ELP L DL+FVGNPLEEKH+ E +W + AT ++PKLKKLDG PV++ DEEE
Sbjct:   52 KLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEEATKRVPKLKKLDGTPVIKGDEEE 188
The following BLAST results are available for this feature:
BLAST of TCONS_00054234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNAL16.439e-6176.64Dynein light chain 1, axonemal OS=Homo sapiens GN=... [more]
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