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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054242 ID=TCONS_00054242|Name=TCONS_00054242|organism=Clytia hemisphaerica|type=transcript|length=2401bpRun BLAST on NCBI protein sequence of TCONS_00054242-protein >TCONS_00054242-protein ID=TCONS_00054242-protein|Name=TCONS_00054242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp MSLTYKGPKSFITPDDARTLGMQQCKTIYCDYYFSLDSEVTLSNPKTLQLRun BLAST on NCBI transcript from alignment at scaffold_242:988628..998664+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054242 ID=TCONS_00054242|Name=TCONS_00054242|organism=Clytia hemisphaerica|type=transcript|length=10037bp|location=Sequence derived from alignment at scaffold_242:988628..998664+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:988628..998664+ >TCONS_00054242 ID=TCONS_00054242|Name=TCONS_00054242|organism=Clytia hemisphaerica|type=CDS|length=11460bp|location=Sequence derived from alignment at scaffold_242:988628..998664+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054242 vs. Swiss-Prot (Human)
Match: PLOD3 (Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Homo sapiens GN=PLOD3 PE=1 SV=1) HSP 1 Score: 505.753 bits (1301), Expect = 4.013e-167 Identity = 238/502 (47.41%), Postives = 338/502 (67.33%), Query Frame = 2
Query: 173 KIHNKRFNTYPAVIHGNGPSKLELDRLSNYFPREWHPSQGCLTCDDGKFSLAEKERKQWPVVVIGLFVYQPTPFVAGFLEFVSKLDYPKDRIFIFLYNNEEYHDNDIEPWVAEYQEQYMSLTYKGPKSFITPDDARTLGMQQCKT-IYCDYYFSLDSEVTLSNPKTLQLLIEQNRTFITPILSQRGKLFSNFWGAIENNGYYARAPDYLSIVRGERVGVWNSPYVTSCYLIRREKLSDMV--HDPFYAPGEDFDMIFAANNRKKGIFMYATNIHEFGHLKKTDTYSTTKKNGDLYQLFDNQWDWERNYLHKDYHRYLKPNIKKIEPCPDVYTFPFVNERWTKQIIQECEAFGKWSDGKKKDKRVAGGYENVPTVDIHMNQIGYEKHWLQMLKLYIKRIVENFYTGYRPKCVANMNFVVKYITEGQNSLPAHHDTSTFTINLALNNQKTDYEGGGVRFTRYNCSVKGAKVGWALIHPGRLTHQHEGLPTTKGVRYVMISFVDP 1669
+I N ++T P V+HGNGP+KL+L+ L NY P W P GC C+ + +L + P V + +FV QPTPF+ FL+ + LDYP DR+ +FL+NNE +H+ I + Q+ + ++ GP+ ++P +AR + M C+ C++YFSLD++ L+N +TL++LIE+NR I P+LS+ GKL+SNFWGA+ + YYAR+ DY+ +V+ +RVGVWN PY++ Y+IR + L + D F D DM F + R KGIF++ +N HEFG L T Y T + DL+Q+FDN DW+ Y+H++Y R L+ +PCPDVY FP ++E+ +++ E E +G+WS G+ +D R+AGGYENVPTVDIHM Q+GYE WLQ+L+ Y+ + E+ + GY K A MNFVV+Y + Q SL HHD+STFT+N+ALN++ DYEGGG RF RY+C + + GWAL+HPGRLTH HEGLPTT G RY+M+SFVDP
Sbjct: 239 RIRNVAYDTLPIVVHGNGPTKLQLNYLGNYVPNGWTPEGGCGFCNQDRRTLPGGQPP--PRVFLAVFVEQPTPFLPRFLQRLLLLDYPPDRVTLFLHNNEVFHEPHIADSWPQLQDHFSAVKLVGPEEALSPGEARDMAMDLCRQDPECEFYFSLDADAVLTNLQTLRILIEENRKVIAPMLSRHGKLWSNFWGALSPDEYYARSEDYVELVQRKRVGVWNVPYISQAYVIRGDTLRMELPQRDVFSGSDTDPDMAFCKSFRDKGIFLHLSNQHEFGRLLATSRYDTEHLHPDLWQIFDNPVDWKEQYIHENYSRALEGEGIVEQPCPDVYWFPLLSEQMCDELVAEMEHYGQWSGGRHEDSRLAGGYENVPTVDIHMKQVGYEDQWLQLLRTYVGPMTESLFPGYHTKARAVMNFVVRYRPDEQPSLRPHHDSSTFTLNVALNHKGLDYEGGGCRFLRYDCVISSPRKGWALLHPGRLTHYHEGLPTTWGTRYIMVSFVDP 738 The following BLAST results are available for this feature:
BLAST of TCONS_00054242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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