TCONS_00054310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054310
Unique NameTCONS_00054310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1062

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054310 ID=TCONS_00054310|Name=TCONS_00054310|organism=Clytia hemisphaerica|type=transcript|length=1062bp
GTTTAATCTATAAAAACTGAAACCTAAGGAAGAAGGCTGctgaaaagtaa
aattaaaatggAGCATTCATCTTAAAGCAATTAATACACCAATATGATCC
GTTGAATGCGAAAGGAGCTCgtcatcaaatcaaaaaaagtggTATCCATG
GAGATGAAACATTTCTTCCTGGTCACGAGCGACGGTTTTGGCAAGGCAGT
CCGCATCATCGTGGAAATGTACAGAAACCTGGACGTGTGTTGACTTTGAA
ACAAAGCCCAGGAGGGCGTGTATGGGGCGTTGTATACGAAGTCAAAGGAA
AGGACAAAATCAAAACAGCATGTGATCGTTTATACGTTCGAGAACAATCC
ATCGGATGTTATGATATGAAAATGTTACCGGTTTACTCTAAAGATAGCGC
TGCGTTCCATGGTAAACCTATACCAGCCATCATTTATTATGCAACGCCAC
ACAATCCGAACTACACAGGGgatgaaggagaagaaaaaattgccaaaatt
atCGCAACTTCACATGGGGTATCTGGGCATAATATCGAGTATCTGTTCCG
GCTTGTTGATTTTATGCGAGAATCTCTACCGAATGAATCGGAACCACATT
TATACACGTTGGATAGTTTAGTAAGGACCAAAGTTGGACTTTGTTGTAAA
ACACCTCTGTCATGGCGTTTATTGTTGCAATGTGATGATCGGTTCCGTAG
AATTGTTGGCTCTGGGAAAGAGAATGTCCGGCGTACTTTGAGTAGCGAGG
ACGAACAAAACAAGTCTTCAATGGCCGTCTGTACTTAGAGACgtcttttg
ttatattttttattgtacCAAAAATATTTGGGGAGGGAGCTATTTTGACA
TTTGAGCAAGTTTAAAGCATGACCGTTTTGGCGGTTTTAAATCTAGCTAA
TTTTACTATGATGATTTCTGAAAATGTCTTTACGAACCTTCACTCTACCA
TAAATTCTTAATCTTCAACTGTAGTAAATTTAATAATattatttaatatt
tattgAGTATTAATTTTCTATTTATCTTTTCTATATGCGCAGATTTCATA
AATAAAAGTCGG
Run BLAST on NCBI

protein sequence of Botch-2 protein

>TCONS_00054310-protein ID=TCONS_00054310-protein|Name=Botch-2 protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MKMLPVYSKDSAAFHGKPIPAIIYYATPHNPNYTGDEGEEKIAKIIATSH
GVSGHNIEYLFRLVDFMRESLPNESEPHLYTLDSLVRTKVGLCCKTPLSW
RLLLQCDDRFRRIVGSGKENVRRTLSSEDEQNKSSMAVCT
Run BLAST on NCBI

transcript from alignment at scaffold_242:53723..56665-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054310 ID=TCONS_00054310|Name=TCONS_00054310|organism=Clytia hemisphaerica|type=transcript|length=2943bp|location=Sequence derived from alignment at scaffold_242:53723..56665- (Clytia hemisphaerica)
GTTTAATCTATAAAAACTGAAACCTAAGGAAGAAGGCTGCTGAAAAGTAA
AATTAAAATGGAGCATTCATCTTAAAGGTATATCGTACTTTTTAGTTTTT
TCTTCTTACTGTCTTTAATTCGTTGTCGTTGTCATGCCTGTGTACGCGAA
TTGAATGATACACGATGGCAATATTCTTATGATATTCTCAATTTTTTTTG
GCCATTTTCATCATGGAAAATCTTATAAATTGTATATATCTTATATAAAA
AAGCAATGTCATTTGGCTTTTTAGTTTGTGGTGTTCGCTTATTTTATAGT
TTTCCTTAAGTTATCCTACTCTCTTACTTATTTTCTCAAGAATAATAACA
GTTTTTTTATCCATGTTTGTGTTTTCCTTTATGTAGCAATTAATACACCA
ATATGATCCGTTGAATGCGAAAGGAGCTCGTCATCAAATCAAAAAAAGTG
GTATCCATGGAGATGAAACATTTCTTCCTGGTGAGTGCAATTACGGATCA
TTAAAAGATGATTTCATTTCTCATATTTTCTTTTATTGATTTATTGATCT
AAATTGGAAGACTTTTTGTTCAATATTTCTGCTGTACTTCCTAGCTGTTT
AGTTTTCCTTTTCAGTTTATATTTCCTCACATCTGATGTCAAAGAAGTTC
CCCCTTCCTACCCTAGTCCTGCTGAAATAAGGCATACACGTTATTTTTAA
GAAACACACTTTTAAGAAACATGAGGCTCAGAATGCCTAAAACCTAAGAA
ACATCTAAGAAACATGCTGAGGCTGAGAATGAGAAAATAATACTTTTTAA
TTCGGTTTTTTAAGAACCAGCCAATCAAAACTGATTATGTCAAAAAGTTT
AGAAATATGTAAGAAACATTTAAGGCTCAAAAGGCCGATTCCTAGATAAA
CATTGATGCTGCTTGGTAAAACTAGTTTCTTAAAAAAAAGTGTAACCTTG
TCAGCAGCCAGGTAATGATACATGTCTTTCGTTATGACCTGGTAGAATCT
CAACACGTTTACATAAATGTCTAGGATGGACAATTATGACCTGAAAGGAT
GTGTTGGTTTTTAATGCATTCTTTCTTGTACGTGTCTACGAGATTAATGT
CTCATATCATCTTTATATCGTTGTGGTAAAATTTCAAAGAATCATGAGCT
TTCTTAAAATTCAAACTATTCATTGCAGTACAGCTTATACATCTTTATGA
TGCTATTTTCAGGCTAGAGACAAATCCTTTAGTGCATAGGCTGGTGTTGG
TTAGAGATTATTACATAAAATGTAAAAGTTCCAGTATTTTTACATTCTAT
ATTTTCATCTATCTTTCAAAAAAAAAATCTATATTTAGAGAATGTAAGTA
AAGATAAAACTAAAACAAAAAATGGAAAAACAAAGCCCGACTTTCGATCT
CACTTCATTTCTAACCACTGTTACATCAACCTTTCTCTATTGTTTATTTT
CTCAACCAATCAAAACATTTTGTTCATACTGCTTTTAACCAATCAAACAA
CATCAAAAACCGACCAACCAATCAAATTACAGTATAGCCTTCCACCTGCC
AATCATCTCCCATATGAAGGAAGTCTGTTGATCATGAAAGCTTTACTAGT
TATTACATCAGGCGAACTAGTAAAACACAGTATATAAGAAAGCTCAAATC
CCATCAATTTCATTCCAAAAGCTGACAAAAAACGGAATGTGTAAAAAATC
AAATTTGAAACAGTTTCAACAAGTTCATTTCAACCATGATTATCACAAAA
GAGAGTTTATTATCACATGATACCATTTACATTTTCGGCTACGGCTCGTT
GATATGGAAACCAGATATCGAATATACCAAGAGGTTCATTGCTTATCTTT
CAGGTCACGAGCGACGGTTTTGGCAAGGCAGTCCGCATCATCGTGGAAAT
GTACAGAAACCTGGACGTGTGTTGACTTTGAAACAAAGCCCAGGAGTAAG
TTTTGATGAGGTTGAATCTATTATCACGAGCTAATACACTGCAAAATAAT
AGATAAATCGTCTAGTTAATTACAAAATAGCGGGCTTGCTGCGAAGATAT
GGTCTTTTTTAGCCTACTCATATATAGAGTATGCAACTGACGTTCAAAGC
TAATCTTGTTTTTTCTCTATTATAACTTTCTCTTGAAATTTTAGGGGCGT
GTATGGGGCGTTGTATACGAAGTCAAAGGAAAGGACAAAATCAAAACAGC
ATGTGATCGTTTATACGTTCGAGAACAATCCATCGGATGTTATGATATGA
AAATGTTACCGGTTTACTCTAAAGATAGCGCTGCGTTCCATGGTAAACCT
ATACCAGCCATCATTTATTATGCAACGCCACACAATCCGAACTACACAGG
GGATGAAGGAGAAGAAAAAATTGCCAAAATTATCGCAACTTCACATGGGG
TATCTGGGCATAATATCGAGTATCTGTTCCGGCTTGTTGATTTTATGCGA
GAATCTCTACCGAATGAATCGGAACCACATTTATACACGTTGGATAGTTT
AGTAAGGACCAAAGTTGGACTTTGTTGTAAAACACCTCTGTCATGGCGTT
TATTGTTGCAATGTGATGATCGGTTCCGTAGAATTGTTGGCTCTGGGAAA
GAGAATGTCCGGCGTACTTTGAGTAGCGAGGACGAACAAAACAAGTCTTC
AATGGCCGTCTGTACTTAGAGACGTCTTTTGTTATATTTTTTATTGTACC
AAAAATATTTGGGGAGGGAGCTATTTTGACATTTGAGCAAGTTTAAAGCA
TGACCGTTTTGGCGGTTTTAAATCTAGCTAATTTTACTATGATGATTTCT
GAAAATGTCTTTACGAACCTTCACTCTACCATAAATTCTTAATCTTCAAC
TGTAGTAAATTTAATAATATTATTTAATATTTATTGAGTATTAATTTTCT
ATTTATCTTTTCTATATGCGCAGATTTCATAAATAAAAGTCGG

Coding sequence (CDS) from alignment at scaffold_242:53723..56665-

>TCONS_00054310 ID=TCONS_00054310|Name=TCONS_00054310|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_242:53723..56665- (Clytia hemisphaerica)
ATGAAAATGTTACCGGTTTACTCTAAAGATAGCGCTGCGTTCCATGGTAA
ACCTATACCAGCCATCATTTATTATGCAACGCCACACAATCCGAACTACA
CAGGGGATGAAGGAGAAGAAAAAATTGCCAAAATTATCGCAACTTCACAT
GGGGTATCTGGGCATAATATCGAGTATCTGTTCCGGCTTGTTGATTTTAT
GCGAGAATCTCTACCGAATGAATCGGAACCACATTTATACACGTTGGATA
GTTTAGTAAGGACCAAAGTTGGACTTTGTTGTAAAACACCTCTGTCATGG
CGTTTATTGTTGCAATGTGATGATCGGTTCCGTAGAATTGTTGGCTCTGG
GAAAGAGAATGTCCGGCGTACTTTGAGTAGCGAGGACGAACAAAACAAGT
CTTCAATGGCCGTCTGTACTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034248XLOC_034248Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054310-exon-scaffold_242-1575043694:56589..56665TCONS_00054310-exon-scaffold_242-1575043694:56589..56665Clytia hemisphaericaexon
TCONS_00054310-exon-scaffold_242-1575043694:56186..56279TCONS_00054310-exon-scaffold_242-1575043694:56186..56279Clytia hemisphaericaexon
TCONS_00054310-exon-scaffold_242-1575043694:54721..54812TCONS_00054310-exon-scaffold_242-1575043694:54721..54812Clytia hemisphaericaexon
TCONS_00054310-exon-scaffold_242-1575043694:53723..54521TCONS_00054310-exon-scaffold_242-1575043694:53723..54521Clytia hemisphaericaexon
TCONS_00054310-exon-scaffold_242-1510915933:56589..56665TCONS_00054310-exon-scaffold_242-1510915933:56589..56665Clytia hemisphaericaexon
TCONS_00054310-exon-scaffold_242-1510915933:56186..56279TCONS_00054310-exon-scaffold_242-1510915933:56186..56279Clytia hemisphaericaexon
TCONS_00054310-exon-scaffold_242-1510915933:54721..54812TCONS_00054310-exon-scaffold_242-1510915933:54721..54812Clytia hemisphaericaexon
TCONS_00054310-exon-scaffold_242-1510915933:53723..54521TCONS_00054310-exon-scaffold_242-1510915933:53723..54521Clytia hemisphaericaexon
TCONS_00054310-exon-scaffold_242-1491911889:56589..56665TCONS_00054310-exon-scaffold_242-1491911889:56589..56665Clytia hemisphaericaexon
TCONS_00054310-exon-scaffold_242-1491911889:56186..56279TCONS_00054310-exon-scaffold_242-1491911889:56186..56279Clytia hemisphaericaexon
TCONS_00054310-exon-scaffold_242-1491911889:54721..54812TCONS_00054310-exon-scaffold_242-1491911889:54721..54812Clytia hemisphaericaexon
TCONS_00054310-exon-scaffold_242-1491911889:53723..54521TCONS_00054310-exon-scaffold_242-1491911889:53723..54521Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Botch-2 proteinTCONS_00054310-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:53723..56665 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.70683	6.52992	2.36902	1.11422	1.2175	0.703728	7.28893	2.92991	1.05527	1.56809	0.565502	0.984813	1.08252	0.395102	1.33057	0.894975	4.9777	2.15579	0.427513	0	2.22741	2.88682	4.21375	5.16177	5.45274	4.30558	1.82626	2.80901	3.47533	4.57414
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006840ChaC
Vocabulary: Molecular Function
TermDefinition
GO:0003839gamma-glutamylcyclotransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006751glutathione catabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006751 glutathione catabolic process
molecular_function GO:0003839 gamma-glutamylcyclotransferase activity
Blast
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BLAST of TCONS_00054310 vs. Swiss-Prot (Human)
Match: CHAC1 (Glutathione-specific gamma-glutamylcyclotransferase 1 OS=Homo sapiens GN=CHAC1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 4.486e-35
Identity = 70/164 (42.68%), Postives = 93/164 (56.71%), Query Frame = 3 
Query:  162 FLPGHERRFWQGSPHHRGNVQKPGRVLTLKQSPGGRVWGVVYEVKGKDKIKTACDRLYVREQSIGCYDMKMLPVYSKDSAAFHGKPIPAIIYYATPHNPNYTGDEGEEKIAKIIATSHGVSGHNIEYLFRLVDFMRESLPNESEPHLYTLDSLVRTKVGLCCKT 653
            F+ G+ RRFWQG   HRG+ + PGRV+TL +   G  WGV Y+V+G +++  A   L VRE  +G YD K +  Y +D+     +P+ A+ Y ATP NP Y G   EE IA  I    G SGHN+EYL RL DFM+   P   + HL  +   V T +   C T
Sbjct:   98 FVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCTWGVAYQVQG-EQVSKALKYLNVREAVLGGYDTKEVTFYPQDAP---DQPLKALAYVATPQNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHLAAIVDAVGTMLPCFCPT 257
The following BLAST results are available for this feature:
BLAST of TCONS_00054310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHAC14.486e-3542.68Glutathione-specific gamma-glutamylcyclotransferas... [more]
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