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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054314 ID=TCONS_00054314|Name=TCONS_00054314|organism=Clytia hemisphaerica|type=transcript|length=3003bp
TTTagcaaacaaagaaaatacaaaatagaTAAACAAGATGGCAGCCCAAC
AGCAAGAACAGCTATCGAAAACTCTATGCTTACATTGTTTGAATGGTGAC
GTCCTCATCGTCGATGATGATTGGTTTGCAAATGGCGAAGATGACGTCAG
AGGATGGAAAAGATGCTTTTTCGATGATTTCCGTAATATAAANGAAGATG
ACGTCAGAGGATGGAAAAAATGCTTTTTCGATGATTTCCGTAatataaaa
tcgaaaaattggggCGCTATTGATGATGTATGTGAAGGTTTTTCAAGTAA
TGTCAAAGATATTCATAACAGTGGGGTACATCCGGATGCTCTTTTTAGTG
CGGAAGAGACAGTGGAACTATTAACTAGCTTGTTAACAGCTGGACTTCGT
AACGAGCGTTATGTATCATCGGTTGTTCAGTTGGCATACACATGCATCAC
ACGCTCCAAGAAATATCATTACCAAATTTACAACGCCAGGCGTTTTTGGT
TCATGCTTTTCGACCGGATACTCTTATTACCGGATCACGTATTTCTGGAA
AGCATCACAGTGTTTTTAACTGTTGTCAGCTCTGCTTTTACTGAGAAAAC
GAAACAACTTTGTTGTGGACCGTATATGATTGTCGTTGATGAGTTCTTGT
ATTTAGATGGTTCATTCCATCATAACAAAATGTATCCCATCTTTAAGAAA
CTTTATGAACTTCAAGGGAAAGCTAGACTTGAGGATTACGAATTTAGCTA
CGACCGTATCGTTTCACCGCTTTTTGCAACGGCCGTCGCACAAAAGGAAT
GGTATTCATTGAAAGATACGCAGCCGGTCGATCTCATTGCATTATTCACT
CGTTTGTCTCTTACAAGACCTGTTATGATTGATCTCTTCCTTCTCCTCGA
CCCTGGAATCCCAATCTTGATGGACTTGCTGAGCAACAAATCATGTCAAC
GAATGCATTCACCACTCCTTTTCTCCATTGATGCACTGATGTCTATCGAC
ACCACAGATTCCAGATTCGAGTTACTTCGTAAGCTATTAGATCAGTTAGA
TTATTCGCTCATCTTGAAATTTGCTGTCCACGACGAAGTGAATTATCGTC
GAGCGTTGGCTCAAAAGATTATCTTGCACACTCTACGTTTCCTTGATCTC
GCACTAAAATCCGGATTCTCTTTCCAACGACCGTGTAAAGAGGAATTAAT
TCAAGTTGAGTTTTCACGTTTGAAACATATGATCACGAAGGGTGGACTAG
ATGATAAAATCTTTTCATTCATCATCGTTACCGAAAGAGTTGAAAGTGAA
AAGGAATCCATCATTAAAGAGAAGTTTCAAGATTATGCAATATGTGTGTT
GAAAGCGTTCCCTACCACGATGTCCAAGTGTAATAAAGACACTAAAGATC
AATTGATCTCATGTGCTTTGAATCTGTTAGTCGCTATCGGTCCTTTGGAA
GAGAAAGAATGCCCTTCCATCTTCACCAATAACACCGTAGAAGTCCTCTC
CAAGTTTTATAGTTACGATGAAAAGGACATTAAGTTGTTATCTCGTGTCA
ATACTGTCAACGTTTGTCAAACAAGTTTCGATAAGAAGTTGGAACTTTTT
CGACTGGTCCCAATCAAGACTTGGGGTGAAGAGATTTATGATTTGTACCG
CAACCGTCGTAACATCAATAAGAATTTGTATTCGCAATTAATGCCCGTCA
CTGTCAAGCTGATTCACTACGATTTATGCATCTTGTATCACATGAAATCA
TCTGGTGTCCTTGAAGAGCTGAACGGCGAACGAATGCAACTCTTTCGCTC
CTTGAAACCCGACACCTTCCGTAACATGTGCGTTTACGTCAACGGCGAAA
ACTGGACGAAAATGTTGGATTACGTAAAAGCGGACGGTCTCAACAAAGAA
ACGTCGAAAATCCCTCAATCGGTAGCGGATAAGATGATGGAAGTTTTGAT
CGCTACAATCTCAGATAAATCTATGCCTGATCGATATAGCACCATCGCTG
TTGCTTGCATGGCACATATTATGCACCATGACGAGCTTGATGTCTCCAAG
CATATCACTCGTTCTTTAGTTTCCACCGTTAATGAGATGTACCAAGATGA
AgctaattgtttttatttgtcTGATGGAGGTGATTTCAAAGATGCTATCA
CCAAAAAGCAATACGCAAAGCTCGGTTTTGGCGATACTAAGAAGAAATCG
GATAAGCAAGCCGTTAAAGGTCCTCGTGATAAAAAGCTTGTAGAAGCTTT
ACAGTCCAGTTTGAAAATCGCTGAGACATTTAGTGCATGCAAAAATGAGG
TTGGAATAACTaagttgaaaaacaaaaacggAACAAAAACAAGAGCTATT
ATTTCAATTATACCGAATCCGAAAGCAAAGAATTCGGATTGCCAAAGAAG
TCATTCGAAAGAAAATCCGAAGTCGGAGAAACAACCGGCGCCGAAAATCG
TTGAGATCGACGATGACGACGGCGAAAAAcgagagaaagagaaaaaaaca
aagaaaatcaaaacctGTGCACTATCTAGCTGCCCGCGTAGCAAGTCAGG
CGGAGAGCAGACGATGTCGGAGAGTGCGCAGAAACGATTTAAGAAGTGTG
GACGTTGTCGTGCGGTGAGTTATTGTGGAAAAGAATGTCAAGCTAAACAT
TGGAGTGAGCATAAGAAGCACTGCAAAGCTTCATAAATATTGTCTTTTGA
TTGAACAATATTGTTAAAGTAGACATTCTGGACATATTGTACAGGTTGCA
GatttcagtttttgaatgatATTGATGAGATCTTTTCATTTTGGACATAT
AACTTTAGAAATAAACGTCCAAACTTTTTGTTGTGGGTCCTTTGCTGAAT
GAAATTGCGCTTAATTTCGTCTACTGTCATTTTATCGTTTAAATCTTGAC
GTAATATttgagaatgtttttttttccattccAAGTGAAGGTCTGTTAAG
ATAAATAAATATATAGTTTTACTAAGTTCTGTGTTACTCAGGCAATATTT
CCC Run BLAST on NCBI transcript from alignment at scaffold_242:157812..162353- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054314 ID=TCONS_00054314|Name=TCONS_00054314|organism=Clytia hemisphaerica|type=transcript|length=4542bp|location=Sequence derived from alignment at scaffold_242:157812..162353- (Clytia hemisphaerica)
TTTAGCAAACAAAGAAAATACAAAATAGATAAACAAGATGGCAGCCCAAC
AGCAAGAACAGCTATCGAAAACTCTATGCTTACATTGTTTGAATGGTGAC
GTCCTCATCGTCGATGATGATTGGTTTGCAAATGGCGAAGATGACGTCAG
AGGATGGAAAAGATGCTTTTTCGATGATTTCCGTAATATAAANGAAGATG
ACGTCAGAGGATGGAAAAAATGCTTTTTCGATGATTTCCGTAATATAAAA
TCGAAAAATTGGGGCGCTATTGATGATGTATGTGAAGGTTTTTCAAGTAA
TGTCAAAGATATTCATAACAGTGGGGTACATCCGGATGCTCTTTTTAGTG
CGGAAGAGACAGTGGAACTATTAACTAGCTTGTTAACAGCTGGACTTCGT
AACGAGCGTTATGTATCATCGGTTGTTCAGTTGGCATACACATGCATCAC
ACGCTCCAAGAAATATCATTACCAAATTTACAACGCCAGGCGTTTTTGGT
TCATGCTTTTCGACCGGATACTCTTATTACCGGATCACGTATTTCTGGAA
AGCATCACAGTGTTTTTAACTGTTGTCAGCTCTGCTTTTACTGAGAAAAC
GAAACAACTTTGTTGTGGACCGTATATGATTGTCGTTGATGAGTTCTTGT
ATTTAGATGGTTCATTCCATCATAACAAAATGTATCCCATCTTTAAGAAA
CTTTATGAACTTCAAGGGAAAGCTAGACTTGAGGATTACGAATTTAGCTA
CGACCGTATCGTTTCACCGCTTTTTGCAACGGCCGTCGCACAAAAGGAAT
GGTATTCATTGAAAGATACGCAGCCGGTCGATCTCATTGCATTATTCACT
CGTTTGTCTCTTACAAGACCTGTTATGATTGATCTCTTCCTTCTCCTCGA
CCCTGGAATCCCAATCTTGATGGACTTGCTGAGCAACAAATCATGTCAAC
GAATGCATTCACCACTCCTTTTCTCCATTGATGCACTGATGTCTATCGAC
ACCACAGATTCCAGATTCGAGTTACTTCGTAAGCTATTAGATCAGTTAGA
TTATTCGCTCATCTTGAAATTTGCTGTCCACGACGAAGTGAATTATCGTC
GAGCGTTGGCTCAAAAGATTATCTTGCACACTCTACGTTTCCTTGATCTC
GCACTAAAATCCGGATTCTCTTTCCAACGACCGTGTAAAGAGGAATTAAT
TCAAGTTGAGTTTTCACGTTTGAAACATATGATCACGAAGGGTGGACTAG
ATGATAAAATCTTTTCATTCATCATCGTTACCGAAAGAGTTGAAAGTGAA
AAGGAATCCATCATTAAAGAGAAGTTTCAAGATTATGCAATATGTGTGTT
GAAAGCGTTCCCTACCACGATGTCCAAGTGTAATAAAGACACTAAAGATC
AATTGATCTCATGTGCTTTGAATCTGTTAGTCGCTATCGGTCCTTTGGAA
GAGAAAGAATGCCCTTCCATCTTCACCAATAACACCGTAGAAGTCCTCTC
CAAGTTTTATAGTTACGATGAAAAGGACATTAAGTTGTTATCTCGCGTCA
ATACTGTCAACGTTTGTCAAACAAGTTTCGATAAGAAGTTGGAACTTTTT
CGACTGGTCCCAATCAAGACTTGGGGTGAAGAGATTTATGATTTGTACCG
CAACCGTCGTAACATCAATAAGAATTTGTATTCGCAATTAATGCCCGTCA
CTGTCAAGCTGATTCACTACGATTTATGCATCTTGTATCACATGAAATCA
TCTGGTGTCCTTGAAGAGCTGAACGGCGAACGAATGCAACTCTTTCGCTC
CTTGAAACCCGACACCTTCCGTAACATGTGCGTTTACGTCAACGGCGAAA
ACTGGACGAAAATGTTGGATTACGTAAAAGCGGACGGTCTCAACAAAGAA
ACGTCGAAAATCCCTCAATCGGTAGCGGATAAGATGATGGAAGTTTTGAT
CGCTACAATCTCAGATAAATCTATGCCTGATCGATATAGCACCATCGCTG
TTGCTTGCATGGCACATATTATGCACCATGACGAGCTTGATGTCTCCAAG
CATATCACTCGTTCTTTAGTTTCTGCCGTTAATGAGATGTACCAAGATGA
AGCTAATTGTTTTTATTTGTCTGATGGAGGTGATTTCAAAGATGCTCTCA
CCAAAAAGCAATACGCAAAGCTCGGTTTTGGCGATACTAAGAAGAAATCG
GATAAGCAAGCCGTTAAAGGTCCTCGTGATAACAAGCTTGTAGAAGCTTT
ACAGTCCAGTTTGAAAATCGCTGAGACATTTAGTGCATGCAAAAATGAGG
TTGGAATAACTAAGTTGAAAAACAAAAACGGAACAAAAACAAGAGCTATT
ATTTCAATTATACCGAATCCGAAAGCAAAGAATTCGGATTGCCAAAGAAG
TCATTCGAAAGAAAATCCGAAGTCGGAGAAACAACCGGCGCCGAAAATCG
TTGAGATCGACGATGACGACGGCGAAAAACGAGAGAAAGAGAAAAAAACA
AAGAAAATCAAAACCTGTGCACTATCTAGCTGCCCGCGTAGCAAGTCAGG
CGGAGAGCAGACGATGTCGGAGAGTGCGCAGAAACGATTTAAGAAGTGTG
GACGTTGTCGTGCGGTGAGTTATTGTGGAAAAGAATGTCAAGCTAAACAT
TGGAGTGAGCATAAGAAGCACTGCAAAGCTTCATAAATATTGTCTTTTGA
TTGAACAATATTGTTAAAGTAGACATTCTGGACATATTGTACAGGTTGCA
GATTTCAGTTTTTGAATGATATTGATGAGATCTTTTCATTTTGGACATAT
AACTTTAGAAATAAACGTCCAAACTTTTTGTTGTGGGTCCTTTGCTGAAT
GAAATTGCGCTTAATTTCGTCTACTGTCATTTTATCGTTTAAATCTTGAC
GTAATATTTGAGAATGTTTTTTTTTCCATTCCAAGTGAAGGTCTGTTAAG
ATAAATAAATATATAGTTTTACTAAGTTCTGTGTTACTCAGGCAATATTT
CCCAGTGCAGCCCTCTCTAATCCGTCATTATTNCCTCTCCAAGTTTTATA
GTTACGATGAACGAGACATTAAGTTGTTATCTCGTGTCAATACTGTCAAC
GTTTGTCAAACAAGTTTCGATAAGAAGTTGGAACTTTTTCGACTGGTCCC
AATCAAGACTTGGGGTGAAGAGATTTATGATTTGTACCGCAACCGTCGTA
ACATCAATAAGAATTTGTATTCGCAATTAATGCCCGTCACTGTCAAGCTG
ATTCACTACGATTTATGCATCTTGTATCACATGAAATCATCTGGTGTCCT
TGAAGAGCTGAACGGCGAACGAATGCAACTCTTTCGCTCCTTGAAACCCG
ACACCTTCCGTAACATGTGCGTTTACGTCAACGGCGAAAACTGGACGAAA
ATGTTGGATTACGTAAAAGCGGACGGTCTCAACAAAGAAACGTCGAAAAT
CCCTCAATCGGTAGCGGATAAGATGATGGAAGTTTTGATCGCTACAATCT
CAGATAAATCTATGCCTGATCGATATAGCACCATCGCTGTTGCTTGCATG
GCACATATTATGCACCATGACGAGCTTGATGTCTCCAAGCATATCACTCG
TTCTTTAGTTTCCACCGTTAATGAGATGTACCAAGATGAAGCTAATTGTT
TTTATTTGTCTGATGGAGGTGATTTCAAAGATGCTATCACCAAAAAGCAA
TACGCAAAGCTCGGTTTTGGCGATACTAAGAAGAAATCGGATAAGCAAGC
CGTTAAAGGTCCTCGTGATAAAAAGCTTGTAGAAGCTTTACAGTCCAGTT
TGAAAATCGCTGAGACATTTAGTGCATGCAAAAATGAGGTTGGAATAACT
AAGTTGAAAAACAAAAACGGAACAAAAACAAGAGCTATTATTTCAATTAT
ACCGAATCCGAAAGCAAAGAATTCGGATTGCCAAAGAAGTCATTCGAAAG
AAAATCCGAAGTCGGAGAAACAACCGGCGCCGAAAATCGTTGAGATCGAC
GATGACGACGGCGAAAAACGAGAGAAAGAGAAAAAAACAAAGAAAATCAA
AACCTGTGCACTATCTAGCTGCCCGCGTAGCAAGTCAGGCGGAGAGCAGA
CGATGTCGGAGAGTGCGCAGAAACGATTTAAGAAGTGTGGACGTTGTCGT
GCGGTGAGTTATTGTGGAAAAGAATGTCAAGCTAAACATTGGAGTGAGCA
TAAGAAGCACTGCAAAGCTTCATAAATATTGTCTTTTGATTGAACAATAT
TGTTAAAGTAGACATTCTGGACATATTGTACAGGTTGCAGATTTCAGTTT
TTGAATGATATTGATGAGATCTTTTCATTTTGGACATATAACTTTAGAAA
TAAACGTCCAAACTTTTTGTTGTGGGTCCTTTGCTGAATGAAATTGCGCT
TAATTTCGTCTACTGTCATTTTATCGTTTAAATCTTGACGTAATATTTGA
GAATGTTTTTTTTTCCATTCCAAGTGAAGGTCTGTTAAGATAAATAAATA
TATAGTTTTACTAAGTTCTGTGTTACTCAGGCAATATTTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054314-exon-scaffold_242-1575043694:160826..162353 | TCONS_00054314-exon-scaffold_242-1575043694:160826..162353 | Clytia hemisphaerica | exon |
| TCONS_00054314-exon-scaffold_242-1575043694:157812..159286 | TCONS_00054314-exon-scaffold_242-1575043694:157812..159286 | Clytia hemisphaerica | exon |
| TCONS_00054314-exon-scaffold_242-1510915933:160826..162353 | TCONS_00054314-exon-scaffold_242-1510915933:160826..162353 | Clytia hemisphaerica | exon |
| TCONS_00054314-exon-scaffold_242-1510915933:157812..159286 | TCONS_00054314-exon-scaffold_242-1510915933:157812..159286 | Clytia hemisphaerica | exon |
| TCONS_00054314-exon-scaffold_242-1491911889:160826..162353 | TCONS_00054314-exon-scaffold_242-1491911889:160826..162353 | Clytia hemisphaerica | exon |
| TCONS_00054314-exon-scaffold_242-1491911889:157812..159286 | TCONS_00054314-exon-scaffold_242-1491911889:157812..159286 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:157812..162353 - |
Blast
The following BLAST results are available for this feature:
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