TCONS_00054314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054314
Unique NameTCONS_00054314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3003

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054314 ID=TCONS_00054314|Name=TCONS_00054314|organism=Clytia hemisphaerica|type=transcript|length=3003bp
TTTagcaaacaaagaaaatacaaaatagaTAAACAAGATGGCAGCCCAAC
AGCAAGAACAGCTATCGAAAACTCTATGCTTACATTGTTTGAATGGTGAC
GTCCTCATCGTCGATGATGATTGGTTTGCAAATGGCGAAGATGACGTCAG
AGGATGGAAAAGATGCTTTTTCGATGATTTCCGTAATATAAANGAAGATG
ACGTCAGAGGATGGAAAAAATGCTTTTTCGATGATTTCCGTAatataaaa
tcgaaaaattggggCGCTATTGATGATGTATGTGAAGGTTTTTCAAGTAA
TGTCAAAGATATTCATAACAGTGGGGTACATCCGGATGCTCTTTTTAGTG
CGGAAGAGACAGTGGAACTATTAACTAGCTTGTTAACAGCTGGACTTCGT
AACGAGCGTTATGTATCATCGGTTGTTCAGTTGGCATACACATGCATCAC
ACGCTCCAAGAAATATCATTACCAAATTTACAACGCCAGGCGTTTTTGGT
TCATGCTTTTCGACCGGATACTCTTATTACCGGATCACGTATTTCTGGAA
AGCATCACAGTGTTTTTAACTGTTGTCAGCTCTGCTTTTACTGAGAAAAC
GAAACAACTTTGTTGTGGACCGTATATGATTGTCGTTGATGAGTTCTTGT
ATTTAGATGGTTCATTCCATCATAACAAAATGTATCCCATCTTTAAGAAA
CTTTATGAACTTCAAGGGAAAGCTAGACTTGAGGATTACGAATTTAGCTA
CGACCGTATCGTTTCACCGCTTTTTGCAACGGCCGTCGCACAAAAGGAAT
GGTATTCATTGAAAGATACGCAGCCGGTCGATCTCATTGCATTATTCACT
CGTTTGTCTCTTACAAGACCTGTTATGATTGATCTCTTCCTTCTCCTCGA
CCCTGGAATCCCAATCTTGATGGACTTGCTGAGCAACAAATCATGTCAAC
GAATGCATTCACCACTCCTTTTCTCCATTGATGCACTGATGTCTATCGAC
ACCACAGATTCCAGATTCGAGTTACTTCGTAAGCTATTAGATCAGTTAGA
TTATTCGCTCATCTTGAAATTTGCTGTCCACGACGAAGTGAATTATCGTC
GAGCGTTGGCTCAAAAGATTATCTTGCACACTCTACGTTTCCTTGATCTC
GCACTAAAATCCGGATTCTCTTTCCAACGACCGTGTAAAGAGGAATTAAT
TCAAGTTGAGTTTTCACGTTTGAAACATATGATCACGAAGGGTGGACTAG
ATGATAAAATCTTTTCATTCATCATCGTTACCGAAAGAGTTGAAAGTGAA
AAGGAATCCATCATTAAAGAGAAGTTTCAAGATTATGCAATATGTGTGTT
GAAAGCGTTCCCTACCACGATGTCCAAGTGTAATAAAGACACTAAAGATC
AATTGATCTCATGTGCTTTGAATCTGTTAGTCGCTATCGGTCCTTTGGAA
GAGAAAGAATGCCCTTCCATCTTCACCAATAACACCGTAGAAGTCCTCTC
CAAGTTTTATAGTTACGATGAAAAGGACATTAAGTTGTTATCTCGTGTCA
ATACTGTCAACGTTTGTCAAACAAGTTTCGATAAGAAGTTGGAACTTTTT
CGACTGGTCCCAATCAAGACTTGGGGTGAAGAGATTTATGATTTGTACCG
CAACCGTCGTAACATCAATAAGAATTTGTATTCGCAATTAATGCCCGTCA
CTGTCAAGCTGATTCACTACGATTTATGCATCTTGTATCACATGAAATCA
TCTGGTGTCCTTGAAGAGCTGAACGGCGAACGAATGCAACTCTTTCGCTC
CTTGAAACCCGACACCTTCCGTAACATGTGCGTTTACGTCAACGGCGAAA
ACTGGACGAAAATGTTGGATTACGTAAAAGCGGACGGTCTCAACAAAGAA
ACGTCGAAAATCCCTCAATCGGTAGCGGATAAGATGATGGAAGTTTTGAT
CGCTACAATCTCAGATAAATCTATGCCTGATCGATATAGCACCATCGCTG
TTGCTTGCATGGCACATATTATGCACCATGACGAGCTTGATGTCTCCAAG
CATATCACTCGTTCTTTAGTTTCCACCGTTAATGAGATGTACCAAGATGA
AgctaattgtttttatttgtcTGATGGAGGTGATTTCAAAGATGCTATCA
CCAAAAAGCAATACGCAAAGCTCGGTTTTGGCGATACTAAGAAGAAATCG
GATAAGCAAGCCGTTAAAGGTCCTCGTGATAAAAAGCTTGTAGAAGCTTT
ACAGTCCAGTTTGAAAATCGCTGAGACATTTAGTGCATGCAAAAATGAGG
TTGGAATAACTaagttgaaaaacaaaaacggAACAAAAACAAGAGCTATT
ATTTCAATTATACCGAATCCGAAAGCAAAGAATTCGGATTGCCAAAGAAG
TCATTCGAAAGAAAATCCGAAGTCGGAGAAACAACCGGCGCCGAAAATCG
TTGAGATCGACGATGACGACGGCGAAAAAcgagagaaagagaaaaaaaca
aagaaaatcaaaacctGTGCACTATCTAGCTGCCCGCGTAGCAAGTCAGG
CGGAGAGCAGACGATGTCGGAGAGTGCGCAGAAACGATTTAAGAAGTGTG
GACGTTGTCGTGCGGTGAGTTATTGTGGAAAAGAATGTCAAGCTAAACAT
TGGAGTGAGCATAAGAAGCACTGCAAAGCTTCATAAATATTGTCTTTTGA
TTGAACAATATTGTTAAAGTAGACATTCTGGACATATTGTACAGGTTGCA
GatttcagtttttgaatgatATTGATGAGATCTTTTCATTTTGGACATAT
AACTTTAGAAATAAACGTCCAAACTTTTTGTTGTGGGTCCTTTGCTGAAT
GAAATTGCGCTTAATTTCGTCTACTGTCATTTTATCGTTTAAATCTTGAC
GTAATATttgagaatgtttttttttccattccAAGTGAAGGTCTGTTAAG
ATAAATAAATATATAGTTTTACTAAGTTCTGTGTTACTCAGGCAATATTT
CCC
Run BLAST on NCBI

transcript from alignment at scaffold_242:157812..162353-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054314 ID=TCONS_00054314|Name=TCONS_00054314|organism=Clytia hemisphaerica|type=transcript|length=4542bp|location=Sequence derived from alignment at scaffold_242:157812..162353- (Clytia hemisphaerica)
TTTAGCAAACAAAGAAAATACAAAATAGATAAACAAGATGGCAGCCCAAC AGCAAGAACAGCTATCGAAAACTCTATGCTTACATTGTTTGAATGGTGAC GTCCTCATCGTCGATGATGATTGGTTTGCAAATGGCGAAGATGACGTCAG AGGATGGAAAAGATGCTTTTTCGATGATTTCCGTAATATAAANGAAGATG ACGTCAGAGGATGGAAAAAATGCTTTTTCGATGATTTCCGTAATATAAAA TCGAAAAATTGGGGCGCTATTGATGATGTATGTGAAGGTTTTTCAAGTAA TGTCAAAGATATTCATAACAGTGGGGTACATCCGGATGCTCTTTTTAGTG CGGAAGAGACAGTGGAACTATTAACTAGCTTGTTAACAGCTGGACTTCGT AACGAGCGTTATGTATCATCGGTTGTTCAGTTGGCATACACATGCATCAC ACGCTCCAAGAAATATCATTACCAAATTTACAACGCCAGGCGTTTTTGGT TCATGCTTTTCGACCGGATACTCTTATTACCGGATCACGTATTTCTGGAA AGCATCACAGTGTTTTTAACTGTTGTCAGCTCTGCTTTTACTGAGAAAAC GAAACAACTTTGTTGTGGACCGTATATGATTGTCGTTGATGAGTTCTTGT ATTTAGATGGTTCATTCCATCATAACAAAATGTATCCCATCTTTAAGAAA CTTTATGAACTTCAAGGGAAAGCTAGACTTGAGGATTACGAATTTAGCTA CGACCGTATCGTTTCACCGCTTTTTGCAACGGCCGTCGCACAAAAGGAAT GGTATTCATTGAAAGATACGCAGCCGGTCGATCTCATTGCATTATTCACT CGTTTGTCTCTTACAAGACCTGTTATGATTGATCTCTTCCTTCTCCTCGA CCCTGGAATCCCAATCTTGATGGACTTGCTGAGCAACAAATCATGTCAAC GAATGCATTCACCACTCCTTTTCTCCATTGATGCACTGATGTCTATCGAC ACCACAGATTCCAGATTCGAGTTACTTCGTAAGCTATTAGATCAGTTAGA TTATTCGCTCATCTTGAAATTTGCTGTCCACGACGAAGTGAATTATCGTC GAGCGTTGGCTCAAAAGATTATCTTGCACACTCTACGTTTCCTTGATCTC GCACTAAAATCCGGATTCTCTTTCCAACGACCGTGTAAAGAGGAATTAAT TCAAGTTGAGTTTTCACGTTTGAAACATATGATCACGAAGGGTGGACTAG ATGATAAAATCTTTTCATTCATCATCGTTACCGAAAGAGTTGAAAGTGAA AAGGAATCCATCATTAAAGAGAAGTTTCAAGATTATGCAATATGTGTGTT GAAAGCGTTCCCTACCACGATGTCCAAGTGTAATAAAGACACTAAAGATC AATTGATCTCATGTGCTTTGAATCTGTTAGTCGCTATCGGTCCTTTGGAA GAGAAAGAATGCCCTTCCATCTTCACCAATAACACCGTAGAAGTCCTCTC CAAGTTTTATAGTTACGATGAAAAGGACATTAAGTTGTTATCTCGCGTCA ATACTGTCAACGTTTGTCAAACAAGTTTCGATAAGAAGTTGGAACTTTTT CGACTGGTCCCAATCAAGACTTGGGGTGAAGAGATTTATGATTTGTACCG CAACCGTCGTAACATCAATAAGAATTTGTATTCGCAATTAATGCCCGTCA CTGTCAAGCTGATTCACTACGATTTATGCATCTTGTATCACATGAAATCA TCTGGTGTCCTTGAAGAGCTGAACGGCGAACGAATGCAACTCTTTCGCTC CTTGAAACCCGACACCTTCCGTAACATGTGCGTTTACGTCAACGGCGAAA ACTGGACGAAAATGTTGGATTACGTAAAAGCGGACGGTCTCAACAAAGAA ACGTCGAAAATCCCTCAATCGGTAGCGGATAAGATGATGGAAGTTTTGAT CGCTACAATCTCAGATAAATCTATGCCTGATCGATATAGCACCATCGCTG TTGCTTGCATGGCACATATTATGCACCATGACGAGCTTGATGTCTCCAAG CATATCACTCGTTCTTTAGTTTCTGCCGTTAATGAGATGTACCAAGATGA AGCTAATTGTTTTTATTTGTCTGATGGAGGTGATTTCAAAGATGCTCTCA CCAAAAAGCAATACGCAAAGCTCGGTTTTGGCGATACTAAGAAGAAATCG GATAAGCAAGCCGTTAAAGGTCCTCGTGATAACAAGCTTGTAGAAGCTTT ACAGTCCAGTTTGAAAATCGCTGAGACATTTAGTGCATGCAAAAATGAGG TTGGAATAACTAAGTTGAAAAACAAAAACGGAACAAAAACAAGAGCTATT ATTTCAATTATACCGAATCCGAAAGCAAAGAATTCGGATTGCCAAAGAAG TCATTCGAAAGAAAATCCGAAGTCGGAGAAACAACCGGCGCCGAAAATCG TTGAGATCGACGATGACGACGGCGAAAAACGAGAGAAAGAGAAAAAAACA AAGAAAATCAAAACCTGTGCACTATCTAGCTGCCCGCGTAGCAAGTCAGG CGGAGAGCAGACGATGTCGGAGAGTGCGCAGAAACGATTTAAGAAGTGTG GACGTTGTCGTGCGGTGAGTTATTGTGGAAAAGAATGTCAAGCTAAACAT TGGAGTGAGCATAAGAAGCACTGCAAAGCTTCATAAATATTGTCTTTTGA TTGAACAATATTGTTAAAGTAGACATTCTGGACATATTGTACAGGTTGCA GATTTCAGTTTTTGAATGATATTGATGAGATCTTTTCATTTTGGACATAT AACTTTAGAAATAAACGTCCAAACTTTTTGTTGTGGGTCCTTTGCTGAAT GAAATTGCGCTTAATTTCGTCTACTGTCATTTTATCGTTTAAATCTTGAC GTAATATTTGAGAATGTTTTTTTTTCCATTCCAAGTGAAGGTCTGTTAAG ATAAATAAATATATAGTTTTACTAAGTTCTGTGTTACTCAGGCAATATTT CCCAGTGCAGCCCTCTCTAATCCGTCATTATTNCCTCTCCAAGTTTTATA GTTACGATGAACGAGACATTAAGTTGTTATCTCGTGTCAATACTGTCAAC GTTTGTCAAACAAGTTTCGATAAGAAGTTGGAACTTTTTCGACTGGTCCC AATCAAGACTTGGGGTGAAGAGATTTATGATTTGTACCGCAACCGTCGTA ACATCAATAAGAATTTGTATTCGCAATTAATGCCCGTCACTGTCAAGCTG ATTCACTACGATTTATGCATCTTGTATCACATGAAATCATCTGGTGTCCT TGAAGAGCTGAACGGCGAACGAATGCAACTCTTTCGCTCCTTGAAACCCG ACACCTTCCGTAACATGTGCGTTTACGTCAACGGCGAAAACTGGACGAAA ATGTTGGATTACGTAAAAGCGGACGGTCTCAACAAAGAAACGTCGAAAAT CCCTCAATCGGTAGCGGATAAGATGATGGAAGTTTTGATCGCTACAATCT CAGATAAATCTATGCCTGATCGATATAGCACCATCGCTGTTGCTTGCATG GCACATATTATGCACCATGACGAGCTTGATGTCTCCAAGCATATCACTCG TTCTTTAGTTTCCACCGTTAATGAGATGTACCAAGATGAAGCTAATTGTT TTTATTTGTCTGATGGAGGTGATTTCAAAGATGCTATCACCAAAAAGCAA TACGCAAAGCTCGGTTTTGGCGATACTAAGAAGAAATCGGATAAGCAAGC CGTTAAAGGTCCTCGTGATAAAAAGCTTGTAGAAGCTTTACAGTCCAGTT TGAAAATCGCTGAGACATTTAGTGCATGCAAAAATGAGGTTGGAATAACT AAGTTGAAAAACAAAAACGGAACAAAAACAAGAGCTATTATTTCAATTAT ACCGAATCCGAAAGCAAAGAATTCGGATTGCCAAAGAAGTCATTCGAAAG AAAATCCGAAGTCGGAGAAACAACCGGCGCCGAAAATCGTTGAGATCGAC GATGACGACGGCGAAAAACGAGAGAAAGAGAAAAAAACAAAGAAAATCAA AACCTGTGCACTATCTAGCTGCCCGCGTAGCAAGTCAGGCGGAGAGCAGA CGATGTCGGAGAGTGCGCAGAAACGATTTAAGAAGTGTGGACGTTGTCGT GCGGTGAGTTATTGTGGAAAAGAATGTCAAGCTAAACATTGGAGTGAGCA TAAGAAGCACTGCAAAGCTTCATAAATATTGTCTTTTGATTGAACAATAT TGTTAAAGTAGACATTCTGGACATATTGTACAGGTTGCAGATTTCAGTTT TTGAATGATATTGATGAGATCTTTTCATTTTGGACATATAACTTTAGAAA TAAACGTCCAAACTTTTTGTTGTGGGTCCTTTGCTGAATGAAATTGCGCT TAATTTCGTCTACTGTCATTTTATCGTTTAAATCTTGACGTAATATTTGA GAATGTTTTTTTTTCCATTCCAAGTGAAGGTCTGTTAAGATAAATAAATA TATAGTTTTACTAAGTTCTGTGTTACTCAGGCAATATTTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034251XLOC_034251Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054314-exon-scaffold_242-1575043694:160826..162353TCONS_00054314-exon-scaffold_242-1575043694:160826..162353Clytia hemisphaericaexon
TCONS_00054314-exon-scaffold_242-1575043694:157812..159286TCONS_00054314-exon-scaffold_242-1575043694:157812..159286Clytia hemisphaericaexon
TCONS_00054314-exon-scaffold_242-1510915933:160826..162353TCONS_00054314-exon-scaffold_242-1510915933:160826..162353Clytia hemisphaericaexon
TCONS_00054314-exon-scaffold_242-1510915933:157812..159286TCONS_00054314-exon-scaffold_242-1510915933:157812..159286Clytia hemisphaericaexon
TCONS_00054314-exon-scaffold_242-1491911889:160826..162353TCONS_00054314-exon-scaffold_242-1491911889:160826..162353Clytia hemisphaericaexon
TCONS_00054314-exon-scaffold_242-1491911889:157812..159286TCONS_00054314-exon-scaffold_242-1491911889:157812..159286Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:157812..162353 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61989 0.831709 0.319277 0.197758 3.84191 4.05625 3.80115 4.45751 2.24844 2.85209 4.07273 1.30321 2.06913 2.48731 1.91491 2.48204 3.63671 2.84488 1.19589 1.86669 2.58038 1.28953 2.39746 2.76906 7.89268 5.5135 1.91682 1.93374 4.02187 2.35864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top