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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054316 ID=TCONS_00054316|Name=TCONS_00054316|organism=Clytia hemisphaerica|type=transcript|length=1153bp
ATAATTTTAGCGATTCATTGAAATAGTTGCATTTTTACcagttttccttt
ttttcaaagATCGGAAGTCGAGGTCCAGTCTGAGCAACACTAACTTAACA
AGCAGTCAGAACAGCAATATCAACAACGGCAACAACAAACAGAACATCGC
TTCTTATGGCAGTCAAACGCAGTTCAAAGCTTCATTCACCATATCACGTG
ATAAAGATGACACTCCAGCTTGCTTCAAACAGGACGGAGAACGCTTCACA
AATGAACAGACCCTGAAATTATATTCAGCTGCAGACTACACTGTTAAAAT
GGAAATTGCACCGAATATGGAATTATTGTATATCAAATTTGGTGGCGTTG
AAACTCCCTTCAAATCAACCAATGATCCTGAAAAAGATCAAAAGTCCATC
TACCAATTTTTATGGTCCACTAAAGGGATTGACCCTACAGAAAATCGACA
TCGAACAGACGTTTTATGTTCTATGAAgttcaaaaacttcaaagaaataG
AGTTCAGGCTACAAGTCAAATTTTATACTTTACAGAAAATGAAACATGCA
ACTTGGGGCGAAAAATTGAACAGTATTTCTATGGATTGTACTGCTGGGCG
TGGCACTTATcaatcttttgttgaaaaaatgaaatatatttaatGCTAAT
GGGTCCAAGTCGTTCCTTCATTGGATGCCTgagaaaatttattattttct
gCGGTTGGGTTAGAGATGTGGCACAGCCAATCCAGATATTGAAATTCTGT
GGATTACCTTATTCCAATATTTGTTCTGCGCAGTTATTTGGTTCAGTTCT
AAGCTTGTGATTTACGAAGGCTCTGCTGTTTGAATATTCTCACAGAGTAA
GATCAAGATACAAATACAGATTGACGTCATGAGTTACTATGGAAACCGTT
GTAAACCACTCCTTTCTCTGGTAGAAAATAGAGTTTGTGTTGTAAACTCA
TTGTAACCATGTCAACCAGCAAAAGAGCCTTGAAGCTGGTTTTATCCaag
gataaactttttaaaaatctatgaTAATATGAACTATAAgtatcttttat
aaaatgttaatttttagtTCCAGTTATTTATTTACGATTATATTATCTGa
cgaaagaaaatatttttaccccTTATCTACCTACCCGATTTTCTTCTAAT
GCC Run BLAST on NCBI transcript from alignment at scaffold_242:168714..171098- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054316 ID=TCONS_00054316|Name=TCONS_00054316|organism=Clytia hemisphaerica|type=transcript|length=2385bp|location=Sequence derived from alignment at scaffold_242:168714..171098- (Clytia hemisphaerica)
ATAATTTTAGCGATTCATTGAAATAGTTGCATTTTTACCAGTTTTCCTTT
TTTTCAAAGGTTTGTTTTTTTCGAGCTTCAAATTTTCACCGGTAAAATAT
TTAGGATCTAAAGAGATCTTGTGTGAAACACATTTGGTGTAACAAAACCT
TGTTACTACCTACGGTCATAACGTTTATATAACATTAAAGTAATGTCGAA
ACACTCTGTGTCGAATGTGTACTGACCAGATAATTTAAGAATTTCTGTTC
TTTTTTACCAGATCGGAAGTCGAGGTCCAGTCTGAGCAACACTAACTTAA
CAAGCAGTCAGAACAGCAATATCAACAACGGCAACAACAAACAGAACATC
GCTTCTTATGGCAGTCAAACGCAGTTCAAAGCTTCATTCACCATATCACG
TGATAAAGATGACACTCCAGCTTGCTTCAAACAGGACGGAGAACGCTTCA
CAAATGAACAGACCCTGAAATTATATTCAGCTGCAGACTACACTGTTAAA
ATGGAAATTGCACCGAATATGGAATTATTGTAAGTCCTGTTACTTCGGCT
TATATCTAGTGCTGTTCAGATTATTCAGACATACCATCATCAATCAGGTT
GACAGAAGTAAGATTTAGACGGGGCTTCATTATCAATGTATGAGATTTGT
TTTTCTCACATAATCTAGATTTGAGTGGTTAATTCTTCCCACAGGCTCGA
GTTTTCGTCAGTTATCGATTGCGTCAAGCGCTTAAACCTGATCAAAGGAT
AAATGCCATGTTCAGATGAATGAGCTGTTATGAAATTCAACAAGAACATT
AAAAATCTATTATTTTTACTCTCAATAACACCATTGAGGGCTTAGAATTT
GTGATTTTTTGTCAGTATTAAGGAGCCACCATACAAACAGTCCTTAACTT
TTTGTTTCGTCTCAGTATCTTGTTTCAAAAGAGATATCCTACGTTATGAA
AACATTAAATTATGTTTTGGCCTAGACGAGGACTGGATATAGCGCACTTG
TTTATCAACTTTATGTTAATCATGTTTATATTACAAAAACTAGAGAGTTT
TAAAATCTCCCAAGCTCAATTGAGACGAGATGGAGTTTTTACAAGCTCTT
ATTTGATTTGGTTGGTCGTTAACCAGTAATAAAACAATTTTGTTACTTTT
CCTAAAGAACGCGTCATTTTTATTATTTTAAATGACCAATTATTAAAGTA
TCTTATAAAAACTCCATCTCATCTGGCTCAAATAGGAAATCCCCACTCAT
CCTTTTGACCTACAACTTCAAGAAATATAAAATAAAAACTTTCGCTCTTA
GGTATTGCTATTTTCCGGTAGATTTGATACCTTAACCTTTGATTTAAGGT
CGGCGTATACTTGAGTTAAATGAGTAAACTTCCTCTTTCACATATTCTTT
AGAATACTTCATCCACTTCCAAAAAGGTCATTTCCATTTTGAGAATACAT
CAGAGCATTTTCCCATGGCCATGACTTTAGGATCTAAAATAATTTCTCGA
TTTCCCACTTAAATTTTCTTGAGCACTCAATGATTTTTATTTATCACATA
TTTTTTCAGGTATATCAAATTTGGTGGCGTTGAAACTCCCTTCAAATCAA
CCAATGATCCTGAAAAAGATCAAAAGTCCATCTACCAATTTTTATGGTCC
ACTAAAGGGATTGACCCTACAGAAAATCGACATCGAACAGACGTTTTATG
TTCTATGAAGTTCAAAAACTTCAAAGAAATAGAGTTCAGGCTACAAGTCA
AATTTTATACTTTACAGAAAATGAAACATGCAACTTGGGGCGAAAAATTG
AACAGTATTTCTATGGATTGTACTGCTGGGCGTGGCACTTATCAATCTTT
TGTTGAAAAAATGAAATATATTTAATGCTAATGGGTCCAAGTCGTTCCTT
CATTGGATGCCTGAGAAAATTTATTATTTTCTGCGGTTGGGTTAGAGATG
TGGCACAGCCAATCCAGATATTGAAATTCTGTGGATTACCTTATTCCAAT
ATTTGTTCTGCGCAGTTATTTGGTTCAGTTCTAAGCTTGTGATTTACGAA
GGCTCTGCTGTTTGAATATTCTCACAGAGTAAGATCAAGATACAAATACA
GATTGACGTCATGAGTTACTATGGAAACCGTTGTAAACCACTCCTTTCTC
TGGTAGAAAATAGAGTTTGTGTTGTAAACTCATTGTAACCATGTCAACCA
GCAAAAGAGCCTTGAAGCTGGTTTTATCCAAGGATAAACTTTTTAAAAAT
CTATGATAATATGAACTATAAGTATCTTTTATAAAATGTTAATTTTTAGT
TCCAGTTATTTATTTACGATTATATTATCTGACGAAAGAAAATATTTTTA
CCCCTTATCTACCTACCCGATTTTCTTCTAATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054316-exon-scaffold_242-1575043694:171040..171098 | TCONS_00054316-exon-scaffold_242-1575043694:171040..171098 | Clytia hemisphaerica | exon |
| TCONS_00054316-exon-scaffold_242-1575043694:170570..170837 | TCONS_00054316-exon-scaffold_242-1575043694:170570..170837 | Clytia hemisphaerica | exon |
| TCONS_00054316-exon-scaffold_242-1575043694:168714..169539 | TCONS_00054316-exon-scaffold_242-1575043694:168714..169539 | Clytia hemisphaerica | exon |
| TCONS_00054316-exon-scaffold_242-1510915933:171040..171098 | TCONS_00054316-exon-scaffold_242-1510915933:171040..171098 | Clytia hemisphaerica | exon |
| TCONS_00054316-exon-scaffold_242-1510915933:170570..170837 | TCONS_00054316-exon-scaffold_242-1510915933:170570..170837 | Clytia hemisphaerica | exon |
| TCONS_00054316-exon-scaffold_242-1510915933:168714..169539 | TCONS_00054316-exon-scaffold_242-1510915933:168714..169539 | Clytia hemisphaerica | exon |
| TCONS_00054316-exon-scaffold_242-1491911889:171040..171098 | TCONS_00054316-exon-scaffold_242-1491911889:171040..171098 | Clytia hemisphaerica | exon |
| TCONS_00054316-exon-scaffold_242-1491911889:170570..170837 | TCONS_00054316-exon-scaffold_242-1491911889:170570..170837 | Clytia hemisphaerica | exon |
| TCONS_00054316-exon-scaffold_242-1491911889:168714..169539 | TCONS_00054316-exon-scaffold_242-1491911889:168714..169539 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:168714..171098 - |
Blast
BLAST of TCONS_00054316 vs. Swiss-Prot (Human)
Match: CNRP1 (CB1 cannabinoid receptor-interacting protein 1 OS=Homo sapiens GN=CNRIP1 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.274e-18 Identity = 42/140 (30.00%), Postives = 74/140 (52.86%), Query Frame = 2
Query: 176 KASFTISRDKDDTPACFKQDGERFTNEQTLKLYSAADYTVKMEIAPN-MELLYIKFGGVETPFK-STNDPEKDQKSIYQFLWSTKGIDPTENRHRTDVLCSMKFKNFKEIEFRLQVKFYTLQKMKHATWGEKLNSISMDC 589
+ S + +D P +K DG+RF +T+KL + + Y V+++I P+ +++ I GGV P + + +P+ D + +Y + T+G+ PT++ R + +M F + E QVKFY K H WG + I +C
Sbjct: 9 RLSIALRIQPNDGPVFYKVDGQRFGQNRTIKLLTGSSYKVEVKIKPSTLQVENISIGGVLVPLELKSKEPDGD-RVVYTGTYDTEGVTPTKSGERQPIQITMPFTDIGTFETVWQVKFYNYHKRDHCQWGSPFSVIEYEC 147
The following BLAST results are available for this feature:
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