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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054317 ID=TCONS_00054317|Name=TCONS_00054317|organism=Clytia hemisphaerica|type=transcript|length=1402bp
ATCCTTGTTTTGATGTCGGTCGAGGAGGATTAATCCAAATTGAGTGGCTA
TACAAACATTGTTGAACATACTCGTGAAAAGAATTAACTTAAGTCAATAT
TACTGAGAGACCTCCAAAGAGTGACTTTGTAAAAAAGGAATATCGTAATA
ATTTTTGACAATCTATAGTTGGACGCTGATGGTTTCGGTGGTCAGTGGTT
TCTATAGTGTGTTGAAACAATaaacaactttttgttttgatgtgcTTTTT
GTAGATGTGTTGTTGTTCTTGATTTTATTTGCCGTGCAATAAATGGCAAC
GAAAACTGATCGGAAGTCGAGGTCCAGTCTGAGCAACACTAACTTAACAA
GCAGTCAGAACAGCAATATCAACAACGGCAACAACAAACAGAACATCGCT
TCTTATGGCAGTCAAACGCAGTTCAAAGCTTCATTCACCATATCACGTGA
TAAAGATGACACTCCAGCTTGCTTCAAACAGGACGGAGAACGCTTCACAA
ATGAACAGACCCTGAAATTATATTCAGCTGCAGACTACACTGTTAAAATG
GAAATTGCACCGAATATGGAATTATTGTATATCAAATTTGGTGGCGTTGA
AACTCCCTTCAAATCAACCAATGATCCTGAAAAAGATCAAAAGTCCATCT
ACCAATTTTTATGGTCCACTAAAGGGATTGACCCTACAGAAAATCGACAT
CGAACAGACGTTTTATGTTCTATGAAgttcaaaaacttcaaagaaataGA
GTTCAGGCTACAAGTCAAATTTTATACTTTACAGAAAATGAAACATGCAA
CTTGGGGCGAAAAATTGAACAGTATTTCTATGGATTGTACTGCTGGGCGT
GGCACTTATcaatcttttgttgaaaaaatgaaatatatttaatGCTAATG
GGTCCAAGTCGTTCCTTCATTGGATGCCTgagaaaatttattattttctg
CGGTTGGGTTAGAGATGTGGCACAGCCAATCCAGATATTGAAATTCTGTG
GATTACCTTATTCCAATATTTGTTCTGCGCAGTTATTTGGTTCAGTTCTA
AGCTTGTGATTTACGAAGGCTCTGCTGTTTGAATATTCTCACAGAGTAAG
ATCAAGATACAAATACAGATTGACGTCATGAGTTACTATGGAAACCGTTG
TAAACCACTCCTTTCTCTGGTAGAAAATAGAGTTTGTGTTGTAAACTCAT
TGTAACCATGTCAACCAGCAAAAGAGCCTTGAAGCTGGTTTTATCCaagg
ataaactttttaaaaatctatgaTAATATGAACTATAAgtatcttttata
aaatgttaatttttagtTCCAGTTATTTATTTACGATTATATTATCTGac
gaaagaaaatatttttaccccTTATCTACCTACCCGATTTTCTTCTAATG
CC Run BLAST on NCBI transcript from alignment at scaffold_242:168714..171455- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054317 ID=TCONS_00054317|Name=TCONS_00054317|organism=Clytia hemisphaerica|type=transcript|length=2742bp|location=Sequence derived from alignment at scaffold_242:168714..171455- (Clytia hemisphaerica)
ATCCTTGTTTTGATGTCGGTCGAGGAGGATTAATCCAAATTGAGTGGCTA
TACAAACATTGTTGAACATACTCGTGAAAAGAATTAACTTAAGTCAATAT
TACTGAGAGACCTCCAAAGAGTGACTTTGTAAAAAAGGAATATCGTAATA
ATTTTTGACAATCTATAGTTGGACGCTGATGGTTTCGGTGGTCAGTGGTT
TCTATAGTGTGTTGAAACAATAAACAACTTTTTGTTTTGATGTGCTTTTT
GTAGATGTGTTGTTGTTCTTGATTTTATTTGCCGTGCAATAAATGGCAAC
GAAAACTGGTAAAACGACTTTTTGCTACTGTATTCGTAATGCAGGGCTTT
AAGAACAATAATTTTAGCGATTCATTGAAATAGTTGCATTTTTACCAGTT
TTCCTTTTTTTCAAAGGTTTGTTTTTTTCGAGCTTCAAATTTTCACCGGT
AAAATATTTAGGATCTAAAGAGATCTTGTGTGAAACACATTTGGTGTAAC
AAAACCTTGTTACTACCTACGGTCATAACGTTTATATAACATTAAAGTAA
TGTCGAAACACTCTGTGTCGAATGTGTACTGACCAGATAATTTAAGAATT
TCTGTTCTTTTTTACCAGATCGGAAGTCGAGGTCCAGTCTGAGCAACACT
AACTTAACAAGCAGTCAGAACAGCAATATCAACAACGGCAACAACAAACA
GAACATCGCTTCTTATGGCAGTCAAACGCAGTTCAAAGCTTCATTCACCA
TATCACGTGATAAAGATGACACTCCAGCTTGCTTCAAACAGGACGGAGAA
CGCTTCACAAATGAACAGACCCTGAAATTATATTCAGCTGCAGACTACAC
TGTTAAAATGGAAATTGCACCGAATATGGAATTATTGTAAGTCCTGTTAC
TTCGGCTTATATCTAGTGCTGTTCAGATTATTCAGACATACCATCATCAA
TCAGGTTGACAGAAGTAAGATTTAGACGGGGCTTCATTATCAATGTATGA
GATTTGTTTTTCTCACATAATCTAGATTTGAGTGGTTAATTCTTCCCACA
GGCTCGAGTTTTCGTCAGTTATCGATTGCGTCAAGCGCTTAAACCTGATC
AAAGGATAAATGCCATGTTCAGATGAATGAGCTGTTATGAAATTCAACAA
GAACATTAAAAATCTATTATTTTTACTCTCAATAACACCATTGAGGGCTT
AGAATTTGTGATTTTTTGTCAGTATTAAGGAGCCACCATACAAACAGTCC
TTAACTTTTTGTTTCGTCTCAGTATCTTGTTTCAAAAGAGATATCCTACG
TTATGAAAACATTAAATTATGTTTTGGCCTAGACGAGGACTGGATATAGC
GCACTTGTTTATCAACTTTATGTTAATCATGTTTATATTACAAAAACTAG
AGAGTTTTAAAATCTCCCAAGCTCAATTGAGACGAGATGGAGTTTTTACA
AGCTCTTATTTGATTTGGTTGGTCGTTAACCAGTAATAAAACAATTTTGT
TACTTTTCCTAAAGAACGCGTCATTTTTATTATTTTAAATGACCAATTAT
TAAAGTATCTTATAAAAACTCCATCTCATCTGGCTCAAATAGGAAATCCC
CACTCATCCTTTTGACCTACAACTTCAAGAAATATAAAATAAAAACTTTC
GCTCTTAGGTATTGCTATTTTCCGGTAGATTTGATACCTTAACCTTTGAT
TTAAGGTCGGCGTATACTTGAGTTAAATGAGTAAACTTCCTCTTTCACAT
ATTCTTTAGAATACTTCATCCACTTCCAAAAAGGTCATTTCCATTTTGAG
AATACATCAGAGCATTTTCCCATGGCCATGACTTTAGGATCTAAAATAAT
TTCTCGATTTCCCACTTAAATTTTCTTGAGCACTCAATGATTTTTATTTA
TCACATATTTTTTCAGGTATATCAAATTTGGTGGCGTTGAAACTCCCTTC
AAATCAACCAATGATCCTGAAAAAGATCAAAAGTCCATCTACCAATTTTT
ATGGTCCACTAAAGGGATTGACCCTACAGAAAATCGACATCGAACAGACG
TTTTATGTTCTATGAAGTTCAAAAACTTCAAAGAAATAGAGTTCAGGCTA
CAAGTCAAATTTTATACTTTACAGAAAATGAAACATGCAACTTGGGGCGA
AAAATTGAACAGTATTTCTATGGATTGTACTGCTGGGCGTGGCACTTATC
AATCTTTTGTTGAAAAAATGAAATATATTTAATGCTAATGGGTCCAAGTC
GTTCCTTCATTGGATGCCTGAGAAAATTTATTATTTTCTGCGGTTGGGTT
AGAGATGTGGCACAGCCAATCCAGATATTGAAATTCTGTGGATTACCTTA
TTCCAATATTTGTTCTGCGCAGTTATTTGGTTCAGTTCTAAGCTTGTGAT
TTACGAAGGCTCTGCTGTTTGAATATTCTCACAGAGTAAGATCAAGATAC
AAATACAGATTGACGTCATGAGTTACTATGGAAACCGTTGTAAACCACTC
CTTTCTCTGGTAGAAAATAGAGTTTGTGTTGTAAACTCATTGTAACCATG
TCAACCAGCAAAAGAGCCTTGAAGCTGGTTTTATCCAAGGATAAACTTTT
TAAAAATCTATGATAATATGAACTATAAGTATCTTTTATAAAATGTTAAT
TTTTAGTTCCAGTTATTTATTTACGATTATATTATCTGACGAAAGAAAAT
ATTTTTACCCCTTATCTACCTACCCGATTTTCTTCTAATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054317-exon-scaffold_242-1575043694:171148..171455 | TCONS_00054317-exon-scaffold_242-1575043694:171148..171455 | Clytia hemisphaerica | exon |
| TCONS_00054317-exon-scaffold_242-1575043694:170570..170837 | TCONS_00054317-exon-scaffold_242-1575043694:170570..170837 | Clytia hemisphaerica | exon |
| TCONS_00054317-exon-scaffold_242-1575043694:168714..169539 | TCONS_00054317-exon-scaffold_242-1575043694:168714..169539 | Clytia hemisphaerica | exon |
| TCONS_00054317-exon-scaffold_242-1510915933:171148..171455 | TCONS_00054317-exon-scaffold_242-1510915933:171148..171455 | Clytia hemisphaerica | exon |
| TCONS_00054317-exon-scaffold_242-1510915933:170570..170837 | TCONS_00054317-exon-scaffold_242-1510915933:170570..170837 | Clytia hemisphaerica | exon |
| TCONS_00054317-exon-scaffold_242-1510915933:168714..169539 | TCONS_00054317-exon-scaffold_242-1510915933:168714..169539 | Clytia hemisphaerica | exon |
| TCONS_00054317-exon-scaffold_242-1491911889:171148..171455 | TCONS_00054317-exon-scaffold_242-1491911889:171148..171455 | Clytia hemisphaerica | exon |
| TCONS_00054317-exon-scaffold_242-1491911889:170570..170837 | TCONS_00054317-exon-scaffold_242-1491911889:170570..170837 | Clytia hemisphaerica | exon |
| TCONS_00054317-exon-scaffold_242-1491911889:168714..169539 | TCONS_00054317-exon-scaffold_242-1491911889:168714..169539 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:168714..171455 - |
Blast
BLAST of TCONS_00054317 vs. Swiss-Prot (Human)
Match: CNRP1 (CB1 cannabinoid receptor-interacting protein 1 OS=Homo sapiens GN=CNRIP1 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 4.795e-18 Identity = 42/140 (30.00%), Postives = 74/140 (52.86%), Query Frame = 2
Query: 425 KASFTISRDKDDTPACFKQDGERFTNEQTLKLYSAADYTVKMEIAPN-MELLYIKFGGVETPFK-STNDPEKDQKSIYQFLWSTKGIDPTENRHRTDVLCSMKFKNFKEIEFRLQVKFYTLQKMKHATWGEKLNSISMDC 838
+ S + +D P +K DG+RF +T+KL + + Y V+++I P+ +++ I GGV P + + +P+ D + +Y + T+G+ PT++ R + +M F + E QVKFY K H WG + I +C
Sbjct: 9 RLSIALRIQPNDGPVFYKVDGQRFGQNRTIKLLTGSSYKVEVKIKPSTLQVENISIGGVLVPLELKSKEPDGD-RVVYTGTYDTEGVTPTKSGERQPIQITMPFTDIGTFETVWQVKFYNYHKRDHCQWGSPFSVIEYEC 147
The following BLAST results are available for this feature:
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