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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054392 ID=TCONS_00054392|Name=TCONS_00054392|organism=Clytia hemisphaerica|type=transcript|length=2866bpRun BLAST on NCBI protein sequence of TCONS_00054392-protein >TCONS_00054392-protein ID=TCONS_00054392-protein|Name=TCONS_00054392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=871bp MSQKTQAASFGGNKRKNSGGGSYFVDRAFLPRIKEYLEVREGPHEADDVVRun BLAST on NCBI transcript from alignment at scaffold_242:1195538..1230308- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054392 ID=TCONS_00054392|Name=TCONS_00054392|organism=Clytia hemisphaerica|type=transcript|length=34771bp|location=Sequence derived from alignment at scaffold_242:1195538..1230308- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:1195538..1230308- >TCONS_00054392 ID=TCONS_00054392|Name=TCONS_00054392|organism=Clytia hemisphaerica|type=CDS|length=57552bp|location=Sequence derived from alignment at scaffold_242:1195538..1230308- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054392 vs. Swiss-Prot (Human)
Match: NVL (Nuclear valosin-containing protein-like OS=Homo sapiens GN=NVL PE=1 SV=1) HSP 1 Score: 762.296 bits (1967), Expect = 0.000e+0 Identity = 428/887 (48.25%), Postives = 572/887 (64.49%), Query Frame = 2
Query: 254 FVDRAFLPRIKEYLEVREGPHEADDVV--DYLQNRFH-EYNRKKRTVLRLSVERALVTLLTKPKPDGDTPKLDSLEENYLRKRQKRSNSQEQENDDVDSDDSLGSMDEELVLFKDTNAMNNSMQNMYKNVSKTPKGNNEVQVTKVVNSAESQKRQPPSTSEQNTTN------KVQQQQDQNANPVAITPYE---------NVNKSHSKRNLNVISEDDRMSS-------RPSTPITKSASRKKAE------------GTKERSRKFDQSVSTTTFKDIGGYENAIAEISKLILHLKHPEVFKHLGVKPPCGFLLHGAPGCGKTLLANAIAGELKVPFFKIAAPEVVSGISGESEQKIRGLFNEARMLAPCLIFIDEIDCITPKRETAGKEMERRVVTQILTCMDEL--ASTDAHVLVIGATNRVDALDPALRRAGRFDREISLGIPDSKARRSILKVLCRDLRLEESFNFDKVASQTPGFVGADIQALVREAAILAVDSAFNMIKEKEKVAVKLFTDEQNAPSPSA-DQPIKTQAESSDSQQQTSSIAWLRDQPPLTNEQLKGLFITSEHFEKALPFVQPSAKREGFATVPDVTWNDIGALEDIRDELKMAIMAPVENPEEFEALGLTVPPGILLAGPPGCGKTLLAKAIANEAGINFISVKGPELLNMYVGESEKAVRQVFLRARNSSPCVIFFDEIDALCPRRSQTGDSSVSSRVVNQLLTEMDGLETRKHVYIMGATNRPDILDNAILRPGRLDKLLYVGLPEPDDRYKILQTITKNGTKPLMDKTLSIQDLANDPRCNGFSGADLSALVREASTAALKEFMLNRDRQSSEQAVNGVNPPLMGVNIKTTCIQAKHVEIAFQKVKPSVSEKDRKFYEDLQKRTQR 2794
FVD R+ +YL + D V LQ + +Y R+KR R+ VE+ + + + + L LE+ +L KR ++ + + DDS SM E+ + N MN+S+ ++Y+ KGN + V N+ E ++R+ S++ + ++ K + + + TP + KS+ K+ + I +D + SS R K + RKK + K ++R + +S F+D+GG + + E+ K+++H++HPEV+ HLGV PP G LLHG PGCGKTLLA+AIAGEL +P K+AAPE+VSG+SGESEQK+R LF +A APC+IFIDEID ITPKRE A K+MERR+V Q+LTCMD+L + A VLVIGATNR D+LDPALRRAGRFDREI LGIPD +R IL+ LCR LRL ++F+F +A TPGFVGAD+ AL REAA+ AV+ ++E++K ++ ++ PS ++ + T+ S + + LRDQ PL+ EQ++GL I F AL VQPSAKREGF TVP+VTW DIGALEDIR+EL MAI+APV NP++F+ALGL P G+LLAGPPGCGKTLLAKA+ANE+G+NFISVKGPELLNMYVGESE+AVRQVF RA+NS+PCVIFFDE+DALCPRRS ++ S RVVNQLLTEMDGLE R+ V+IM ATNRPDI+D AILRPGRLDK L+VGLP P DR IL+TITKNGTKP +D ++++ +A D RC+ ++GADLSALVREAS AL++ M R + +E+ +K + KH E AF+KV+ S+S+KD+ YE LQ+ R
Sbjct: 8 FVDNKLKQRVIQYLTSNKCGKYVDIGVLASDLQRVYSIDYGRRKRNAFRIQVEKVFSIISS----EKELKNLTELEDEHLAKRARQGEEDNEYTESYSDDDS--SM-EDYPDPQSANHMNSSLLSLYR------KGNPD----SVSNTPEMEQRETTSSTPRISSKTGSIPLKTPAKDSEGGWFIDKTPSVKKDSFFLDLSCEKSNPKKPITEI-QDSKDSSLLESDMKRKGKLKNKGSKRKKEDLQEVDGEIEAVLQKKAKARGLEFQISNVKFEDVGGNDMTLKEVCKMLIHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMKLQEQQKKNPEM----EDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM-ARQKSGNEKG-----------ELK---VSHKHFEEAFKKVRSSISKKDQIMYERLQESLSR 856 The following BLAST results are available for this feature:
BLAST of TCONS_00054392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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