TCONS_00054396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054396
Unique NameTCONS_00054396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054396 ID=TCONS_00054396|Name=TCONS_00054396|organism=Clytia hemisphaerica|type=transcript|length=2522bp
AAAGTATAAACTATACAGTTGTTTTACACCTTGCCTTACTTTGTATCAGC
TTGAATACCAAATGAACATTATTTTGGTCTTTCATGTCATATACAATGAA
ACTTAAATGTTTCAGTTTTACACAATAGTGttcatgtttcatatcaggta
CTTGGTTATAATGTGTTCACTTCCTGATGAGTAAAGAAAAAATGGTTTCC
CTTTCCCCTTTTCTGAACAATCTTGCTacacattcgtgtcaattcaatgt
ggaaaagcttgtgaattaaaattgatgagtaagcaaaacaaaacctttaa
cgcTAAATACCCATGTGActttatgttgttttttctttacagGAAAACGC
ACGTTTAGTATTATCGGTAGACCACGAAATAGTAAATAAATTAGAAGCCC
ATTATACAAAAGCAATAAAGACTTTATGGGAAGACGATGGTATTCAAGAA
GCATACGATAGACGAAGAGAATTTCAATTATCAGACTCTGCTAATTATTA
TTTAAACGATTTGGAAAGGATAGCAGAACCAAATTACGTGCCAACAGAAC
AGGATGTTTTACGTGCAAGATCACCTACTACAGGGATCATCGAATACCCT
TTCGACTTGGATACTATTATTTTTAGGATGGTAGACGTAGGAGGTCAGCG
TTCTGAACGAAGGAAGTGGAttcattgttttgaaaatgtcacaTCAATCA
TGTTCTTAGTCGCCCTTAGTGAATTCGATCAACTGTTATTTGAATCAGAA
AATGAGAACCGTATGGAAGAAAGTAAAGCACTGTTCAAGACCATCATCAC
TTATCCGTGGTTCCAACAATCGTCCATcatattgtttttaaataaaaccg
ATTTACTAgaagaaaaaatcatgaaatctAACTTAGCTGattattttcct
gaatttgACGGACCAAAATTGGACGCCAAAGCAGCTCGGGAATTTATACT
GAAGATGTTTGTGGACCTTAATCCAGATACAGAGAAGATAATTTATTCAC
ATTTCACTTGTGCAACAGACACTGAAAATATTCGTTTTGTATTCGCAGCA
GTAAAAGACACTATCTTGCAACTCAACCTAAAGGAATACAACTTAGTCTA
ATAACGGTTTTTTGTCTTTGCTAAAAATTGAATGTAATTGTATTCTTTGA
TTCACGTCTGTGGAAAGGATTTGGTTACAGTCAGGAGAAATTGGCTGCTT
TTGAGGGTTGCTGCCAAATGTGAGAAAGAGAGAGCGGGAAAAACGGTAGT
ATATTATGGATGGACCCAAAAATTAAACAACTTAATCAAAACGGTTAAAA
GCCTTTTAAATATGGCTTGAGGTTGAATTTTTTATATATGCCATATGCAC
TCAtcggtgatgacgtcattaatataaataagccaatgaaaatgatgatg
acACGATAAGAAGGGGCTGGATTAAGGACAACGCTACCCATGAAATCATT
CTAACGCTAATTTAAAAACTCCCACAAATTATATGGAGTTGTGAACGTCG
TCAACAGTCGCCGCTTTATCGTACGATACATTTTAAAAGAGTCAAACACA
ATATGGATATGGTTTCATAGAGGATGATGATATACTACTATTGGTGCTAC
GAGTACACGGAAACACAGAATAATATAATAATGATAATTATAATGATGTT
GAGATATAGTATTCTTTGTTCTCCAATTATCCTCCTCTTTTGCCTCTAAG
AAGCGGTGATTTCTATCAACTAGTAAAAATTTAGTGTGttttatgagaaa
aatgaataaactTTTGGCTGTTCTTAAAATTCCCATAAATTTCTATAAct
aactttatttttcaaatctgCAAAGAGTGTAATTCTCTTTAGAAATAGCC
TCGGAAAAAAATGTATTCAGtctgaaaacAGttagttatttttatttttt
tgtctttgtcgaatccccccccccctccctttttttgacaaattatttAA
CCTGATACAGAAAATTATTCGGCACTAATAGCACGCACATCGCTACTACC
AAAatgttattcttttttattGATATCTGAACTTATATAATTTATGCACA
GTTATTCTTCTAATAAATttgtgaattgtttttttttttaatcttttaga
AAATTCTGTTTTAATTCATATACTTTCTTCTATAGAACTTAGATTTTAAT
TCTTAAGTCTGAAACAAAATACAGAAATTAGCCACAAAAATAAAGGTACC
ATgtatgactttttttcaaggttttaacACGATAGTGACTTAAAATATTC
GATGCTtaaattttggagaaaataatCCTTTATGTTTTTTATGGATGACA
ACCTTAGAGTAACAGAAAATGTTGTATAAACTATCTAGCTAATCATGTAA
TTTCACCCTGAATAGAATTTTATtggtattttaatttttttgctttattt
tttatgttttaactACTCCGCTAAAAGAAAATGCTCGGGAGAAGAACAAA
TCAACCATTTGTGTCCAACTTTAACTATTCTATGTGTACTTGTTTTCAGT
CGAATCACAAAGTTTCATCAAG
Run BLAST on NCBI

protein sequence of TCONS_00054396-protein

>TCONS_00054396-protein ID=TCONS_00054396-protein|Name=TCONS_00054396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MVDVGGQRSERRKWIHCFENVTSIMFLVALSEFDQLLFESENENRMEESK
ALFKTIITYPWFQQSSIILFLNKTDLLEEKIMKSNLADYFPEFDGPKLDA
KAAREFILKMFVDLNPDTEKIIYSHFTCATDTENIRFVFAAVKDTILQLN
LKEYNLV
Run BLAST on NCBI

transcript from alignment at scaffold_242:1325398..1329965-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054396 ID=TCONS_00054396|Name=TCONS_00054396|organism=Clytia hemisphaerica|type=transcript|length=4568bp|location=Sequence derived from alignment at scaffold_242:1325398..1329965- (Clytia hemisphaerica)
AAAGTATAAACTATACAGTTGTTTTACACCTTGCCTTACTTTGTATCAGC
TTGAATACCAAATGAACATTATTTTGGTCTTTCATGTCATATACAATGAA
ACTTAAATGTTTCAGTTTTACACAATAGTGTTCATGTTTCATATCAGGTA
CTTGGTTATAATGTGTTCACTTCCTGATGAGTAAAGAAAAAATGGTTTCC
CTTTCCCCTTTTCTGAACAATCTTGCTACACATTCGTGTCAATTCAATGT
GGAAAAGCTTGTGAATTAAAATTGATGAGTAAGCAAAACAAAACCTTTAA
CGCTAAATACCCATGTGACTTTATGTTGTTTTTTCTTTACAGGAAAACGC
ACGTTTAGTATTATCGGTAGACCACGAAATAGTAAATAAATTAGAAGCCC
ATTATACAAAAGCAATAAAGACTTTATGGGAAGACGATGGTATTCAAGAA
GCATACGATAGACGAAGAGAATTTCAATTATCAGACTCTGCTAATTAGTA
AGCTTAATTTCGTTACTTTTTACTTAAATTGGACTGTACACTCTTCGAAA
AAAGCCAACTTTTGGCTGAACCTTACAACTTGAAACCCTAACTAAAATTC
AAGCAAGATTCTTGATAGTAATGACATCAAAATAATTGAAAGAGTCTGTG
ATTCCTGTATTCCTGTCTAAAAAAAAGATTTTAGAAAATGGTCGGATTTG
GCTGAATTTTGATACGCGTGAATAGAATTGAGTGAATATCTGAGTGGTCT
TGTTTCCATTCTTTCAAAAATTTTGCATCTCAAAAACTTGGCTTTAAACA
GGCAAAAAAAGAAGCCAATTTCTATTTTATTTGGAAATAATGTTTGCTTG
ATCAGCTTATGTTCTCCCTAATACAGTACAATCTTTTCGATTTAGTTATT
TAAACGATTTGGAAAGGATAGCAGAACCAAATTACGTGCCAACAGAACAG
GATGTTTTACGTGCAAGATCACCTACTACAGGGATCATCGAATACCCTTT
CGACTTGGATACTATTATTTTTAGGTATGCGAGCTTTTTAAATGAACCAA
CTTTAAGCTAAGGCAACACTGAACAATATTTGTATGCGCTTGCAGCGCAA
CTTGTTTAACAAAAACTCGAGATTTCAAAGAAGAGATTTAAGAAACCTGC
AACAAAACCAGTTCTTTGGTGCAGACGCCCGTAATTTTTTTCTTACTGTA
ATTTAAAAACAATAGAATTCAAATAAGCTGGGAAAGAGACATTTCAGTGC
ATGGCTACACTTTGTTAATCGAACTTTCTTGTCTTATTCGTATTTCAACA
TTGGGCTTTTCTAGAAGAAATTCGTTCATGGGGGTGGAGGATGAATTGTC
CAGAGGTCCCAAAAAAAGTCTTAAAAATTACACTGTCCAGGGGGTAAATC
TTGGTGTCCAGGGGGTTAAGTTGATGATTATCCATGGGTGTAACCCATGT
TAATGTCCAGGGGTAATTTATTGAAAAAATAATCTATTCTATACCCCTAA
TGCGAATGGATGGATTCTTTCTGGAAGAGCCCATTTCAGCCTTCAATAAG
GGGAATTGACTTTTTTCCCTTGAAAACCCATTTTACCTTACGATCTTTCT
AGACTTGCCAGGTTTCTTTACAATATTACGTATAGATTGCAATTTTTATT
TATTTTTTGCTTTGTTTTGTAGGATGGTAGACGTAGGAGGTCAGCGTTCT
GAACGAAGGAAGTGGATTCATTGTTTTGAAAATGTCACATCAATCATGTT
CTTAGTCGCCCTTAGTGAATTCGATCAACTGTTATTTGAATCAGAAAATG
AGGTATTTTGAATTACTCTTCATTCTGCCCATTATTGTCTTAAGCATAGC
TCACCGTATTACTTCGAATAAACACCCCCTCTAAAGTTAAATCCACAAAC
ATTTCGATCTTGTCTGAATAAACTCCCTCTGAAATGCATGTAGTTAATCA
GGGTTTAAATAGCTAGTTAAATCTCATACTCCCGTCGGTCGACAGCTTTT
GAAGTTTGTACAATATTCGCAAAAGGCTCGGAAAACACGAGTTACAAAAA
ACACGAGCTACGTCAAATGTGACGTCTTCAGCGTGGAATAATGACGTCAC
AAGTAGATGAATTAACTCGTCAAATTATGGTCCATCTTAAACTGACGAGT
TAATTAACTCGTAAAATTATTGTGCGCCTTAATCTTACGCTGTTGTTGTT
CTCTTTTCTTTTAGAACCGTATGGAAGAAAGTAAAGCACTGTTCAAGACC
ATCATCACTTATCCGTGGTTCCAACAATCGTCCATCATATTGTTTTTAAA
TAAAACCGATTTACTAGAAGAAAAAATCATGAAATCTAACTTAGCTGATT
ATTTTCCTGAATTTGACGGTAAGGGTTTCTTCTAATTATTCTTTCGAGTC
GGATCCTTGTAATACACTCTTCTCGATATGCATAAATTTATTGTTGTCCT
CGTTTTCAAACAGATTTCATTGCTATGAAATTATACATTTAAACCAATTT
AAATTCCCAAAAGGCAAACATCAACTCTAAAGCAAAAGTACTTGAAATTC
AAAATGTCTCATGAAGTGTAACAACACAATTATCATTGTGAATATGTAAT
TTTATAGTAATGAAATCTGTTTGAAAACGAGGACAACAATAAATTTATGC
ATCTCGAGAAGAGTGTATTTTGGTATTTGATTTATCAAGTAGACACGTGG
CCTTTTTAACAAAATTGGTTTGAATACACGGGTTGCAAAATTGGTAGTAT
AGTCAAAATTAAATTGCAGAATTTATAAAATGCATTTGATTACTCGAAAA
TGCTCACATGATTTTATTCCCCTATTCCTTTTCTTTGCAATTTACAGGTA
ATAACTTTATTATTGATTCTGAAAAAAATTGATTCTCTCATTCTTTCATT
CTCGTCTTTTCTCTACAGGACCAAAATTGGACGCCAAAGCAGCTCGGGAA
TTTATACTGAAGATGTTTGTGGACCTTAATCCAGATACAGAGAAGATAAT
TTATTCACATTTCACTTGTGCAACAGACACTGAAAATATTCGTTTTGTAT
TCGCAGCAGTAAAAGACACTATCTTGCAACTCAACCTAAAGGAATACAAC
TTAGTCTAATAACGGTTTTTTGTCTTTGCTAAAAATTGAATGTAATTGTA
TTCTTTGATTCACGTCTGTGGAAAGGATTTGGTTACAGTCAGGAGAAATT
GGCTGCTTTTGAGGGTTGCTGCCAAATGTGAGAAAGAGAGAGCGGGAAAA
ACGGTAGTATATTATGGATGGACCCAAAAATTAAACAACTTAATCAAAAC
GGTTAAAAGCCTTTTAAATATGGCTTGAGGTTGAATTTTTTATATATGCC
ATATGCACTCATCGGTGATGACGTCATTAATATAAATAAGCCAATGAAAA
TGATGATGACACGATAAGAAGGGGCTGGATTAAGGACAACGCTACCCATG
AAATCATTCTAACGCTAATTTAAAAACTCCCACAAATTATATGGAGTTGT
GAACGTCGTCAACAGTCGCCGCTTTATCGTACGATACATTTTAAAAGAGT
CAAACACAATATGGATATGGTTTCATAGAGGATGATGATATACTACTATT
GGTGCTACGAGTACACGGAAACACAGAATAATATAATAATGATAATTATA
ATGATGTTGAGATATAGTATTCTTTGTTCTCCAATTATCCTCCTCTTTTG
CCTCTAAGAAGCGGTGATTTCTATCAACTAGTAAAAATTTAGTGTGTTTT
ATGAGAAAAATGAATAAACTTTTGGCTGTTCTTAAAATTCCCATAAATTT
CTATAACTAACTTTATTTTTCAAATCTGCAAAGAGTGTAATTCTCTTTAG
AAATAGCCTCGGAAAAAAATGTATTCAGTCTGAAAACATTTTTTATTTTG
TGAAAATTGCTTGGAAAATTCAAACAGTTAGTTATTTTTATTTTTTTGTC
TTTGTCGAATCCCCCCCCCCCTCCCTTTTTTTGACAAATTATTTAACCTG
ATACAGAAAATTATTCGGCACTAATAGCACGCACATCGCTACTACCAAAA
TGTTATTCTTTTTTATTGATATCTGAACTTATATAATTTATGCACAGTTA
TTCTTCTAATAAATTTGTGAATTGTTTTTTTTTTTAATCTTTTAGAAAAT
TCTGTTTTAATTCATATACTTTCTTCTATAGAACTTAGATTTTAATTCTT
AAGTCTGAAACAAAATACAGAAATTAGCCACAAAAATAAAGGTACCATGT
ATGACTTTTTTTCAAGGTTTTAACACGATAGTGACTTAAAATATTCGATG
CTTAAATTTTGGAGAAAATAATCCTTTATGTTTTTTATGGATGACAACCT
TAGAGTAACAGAAAATGTTGTATAAACTATCTAGCTAATCATGTAATTTC
ACCCTGAATAGAATTTTATTGGTATTTTAATTTTTTTGCTTTATTTTTTA
TGTTTTAACTACTCCGCTAAAAGAAAATGCTCGGGAGAAGAACAAATCAA
CCATTTGTGTCCAACTTTAACTATTCTATGTGTACTTGTTTTCAGTCGAA
TCACAAAGTTTCATCAAG

Coding sequence (CDS) from alignment at scaffold_242:1325398..1329965-

>TCONS_00054396 ID=TCONS_00054396|Name=TCONS_00054396|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_242:1325398..1329965- (Clytia hemisphaerica)
GACCAAAATTGGACGCCAAAGCAGCTCGGGAATTTATACTGAAGATGTTT
GTGGACCTTAATCCAGATACAGAGAAGATAATTTATTCACATTTCACTTG
TGCAACAGACACTGAAAATATTCGTTTTGTATTCGCAGCAGTAAAAGACA
CTATCTTGCAACTCAACCTAAAGGAATACAACTTAGTCTAAAACCGTATG
GAAGAAAGTAAAGCACTGTTCAAGACCATCATCACTTATCCGTGGTTCCA
ACAATCGTCCATCATATTGTTTTTAAATAAAACCGATTTACTAGAAGAAA
AAATCATGAAATCTAACTTAGCTGATTATTTTCCTGAATTTGACGATGGT
AGACGTAGGAGGTCAGCGTTCTGAACGAAGGAAGTGGATTCATTGTTTTG
AAAATGTCACATCAATCATGTTCTTAGTCGCCCTTAGTGAATTCGATCAA
CTGTTATTTGAATCAGAAAATGAGGACCAAAATTGGACGCCAAAGCAGCT
CGGGAATTTATACTGAAGATGTTTGTGGACCTTAATCCAGATACAGAGAA
GATAATTTATTCACATTTCACTTGTGCAACAGACACTGAAAATATTCGTT
TTGTATTCGCAGCAGTAAAAGACACTATCTTGCAACTCAACCTAAAGGAA
TACAACTTAGTCTAAAACCGTATGGAAGAAAGTAAAGCACTGTTCAAGAC
CATCATCACTTATCCGTGGTTCCAACAATCGTCCATCATATTGTTTTTAA
ATAAAACCGATTTACTAGAAGAAAAAATCATGAAATCTAACTTAGCTGAT
TATTTTCCTGAATTTGACGATGGTAGACGTAGGAGGTCAGCGTTCTGAAC
GAAGGAAGTGGATTCATTGTTTTGAAAATGTCACATCAATCATGTTCTTA
GTCGCCCTTAGTGAATTCGATCAACTGTTATTTGAATCAGAAAATGAGGA
CCAAAATTGGACGCCAAAGCAGCTCGGGAATTTATACTGAAGATGTTTGT
GGACCTTAATCCAGATACAGAGAAGATAATTTATTCACATTTCACTTGTG
CAACAGACACTGAAAATATTCGTTTTGTATTCGCAGCAGTAAAAGACACT
ATCTTGCAACTCAACCTAAAGGAATACAACTTAGTCTAAAACCGTATGGA
AGAAAGTAAAGCACTGTTCAAGACCATCATCACTTATCCGTGGTTCCAAC
AATCGTCCATCATATTGTTTTTAAATAAAACCGATTTACTAGAAGAAAAA
ATCATGAAATCTAACTTAGCTGATTATTTTCCTGAATTTGACGATGGTAG
ACGTAGGAGGTCAGCGTTCTGAACGAAGGAAGTGGATTCATTGTTTTGAA
AATGTCACATCAATCATGTTCTTAGTCGCCCTTAGTGAATTCGATCAACT
GTTATTTGAATCAGAAAATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034293XLOC_034293Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054396-proteinTCONS_00054396-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054396-exon-scaffold_242-1575043694:1329469..1329965TCONS_00054396-exon-scaffold_242-1575043694:1329469..1329965Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1575043694:1328942..1329070TCONS_00054396-exon-scaffold_242-1575043694:1328942..1329070Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1575043694:1328164..1328293TCONS_00054396-exon-scaffold_242-1575043694:1328164..1328293Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1575043694:1327598..1327751TCONS_00054396-exon-scaffold_242-1575043694:1327598..1327751Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1575043694:1326079..1327047TCONS_00054396-exon-scaffold_242-1575043694:1326079..1327047Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1575043694:1325398..1326040TCONS_00054396-exon-scaffold_242-1575043694:1325398..1326040Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1510915933:1329469..1329965TCONS_00054396-exon-scaffold_242-1510915933:1329469..1329965Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1510915933:1328942..1329070TCONS_00054396-exon-scaffold_242-1510915933:1328942..1329070Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1510915933:1328164..1328293TCONS_00054396-exon-scaffold_242-1510915933:1328164..1328293Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1510915933:1327598..1327751TCONS_00054396-exon-scaffold_242-1510915933:1327598..1327751Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1510915933:1326079..1327047TCONS_00054396-exon-scaffold_242-1510915933:1326079..1327047Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1510915933:1325398..1326040TCONS_00054396-exon-scaffold_242-1510915933:1325398..1326040Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1491911889:1329469..1329965TCONS_00054396-exon-scaffold_242-1491911889:1329469..1329965Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1491911889:1328942..1329070TCONS_00054396-exon-scaffold_242-1491911889:1328942..1329070Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1491911889:1328164..1328293TCONS_00054396-exon-scaffold_242-1491911889:1328164..1328293Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1491911889:1327598..1327751TCONS_00054396-exon-scaffold_242-1491911889:1327598..1327751Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1491911889:1326079..1327047TCONS_00054396-exon-scaffold_242-1491911889:1326079..1327047Clytia hemisphaericaexon
TCONS_00054396-exon-scaffold_242-1491911889:1325398..1326040TCONS_00054396-exon-scaffold_242-1491911889:1325398..1326040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1325398..1329965 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.517	18.769	22.9776	27.8129	176.316	123.814	181.739	191.243	104.592	108.922	80.683	70.414	82.7538	69.3691	51.3451	57.6061	111.023	104.683	72.7206	98.5325	139.305	140.793	90.2189	94.3344	78.3391	97.0179	76.3263	67.6563	75.608	81.4343
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001019Gprotein_alpha_su
IPR000654Gprotein_alpha_Q
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0004871signal transducer activity
GO:0031683G-protein beta/gamma-subunit complex binding
GO:0019001guanyl nucleotide binding
GO:0005525GTP binding
GO:0001664G-protein coupled receptor binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
molecular_function GO:0031683 G-protein beta/gamma-subunit complex binding
molecular_function GO:0001664 G-protein coupled receptor binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0019001 guanyl nucleotide binding
molecular_function GO:0004871 signal transducer activity
Blast
[Close]
BLAST of TCONS_00054396 vs. Swiss-Prot (Human)
Match: GNAQ (Guanine nucleotide-binding protein G(q) subunit alpha OS=Homo sapiens GN=GNAQ PE=1 SV=4)

HSP 1 Score: 431.409 bits (1108), Expect = 3.168e-143
Identity = 203/253 (80.24%), Postives = 227/253 (89.72%), Query Frame = 1 
Query:  340 QENARLVLSVDHEIVNKLEAHYTKAIKTLWEDDGIQEAYDRRREFQLSDSANYYLNDLERIAEPNYVPTEQDVLRARSPTTGIIEYPFDLDTIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEFDQLLFESENENRMEESKALFKTIITYPWFQQSSIILFLNKTDLLEEKIMKSNLADYFPEFDGPKLDAKAAREFILKMFVDLNPDTEKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 1098
            + +A+LV  VD E V+  E  Y  AIK+LW D GIQE YDRRRE+QLSDS  YYLNDL+R+A+P Y+PT+QDVLR R PTTGIIEYPFDL ++IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSE+DQ+L ES+NENRMEESKALF+TIITYPWFQ SS+ILFLNK DLLEEKIM S+L DYFPE+DGP+ DA+AAREFILKMFVDLNPD++KIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV
Sbjct:  107 KAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 359
The following BLAST results are available for this feature:
BLAST of TCONS_00054396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GNAQ3.168e-14380.24Guanine nucleotide-binding protein G(q) subunit al... [more]
back to top